Wall clock time and date at job start Tue Mar 31 2020 19:00:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46505 * 109.46962 * 2 1 4 4 C 1.36935 * 120.00275 * 264.29231 * 3 2 1 5 5 H 1.07994 * 120.00095 * 188.64388 * 4 3 2 6 6 C 1.38815 * 119.99668 * 8.63671 * 4 3 2 7 7 N 1.31618 * 120.00361 * 24.60464 * 6 4 3 8 8 Si 1.86805 * 119.99749 * 204.60602 * 6 4 3 9 9 H 1.48499 * 109.47154 * 85.02624 * 8 6 4 10 10 H 1.48498 * 109.47072 * 205.02923 * 8 6 4 11 11 H 1.48500 * 109.47110 * 325.02291 * 8 6 4 12 12 C 1.46494 * 119.99737 * 84.28899 * 3 2 1 13 13 C 1.53002 * 109.47530 * 269.99956 * 12 3 2 14 14 N 1.46494 * 109.47338 * 180.02562 * 13 12 3 15 15 C 1.34781 * 119.99965 * 180.02562 * 14 13 12 16 16 O 1.21273 * 119.99802 * 359.97438 * 15 14 13 17 17 C 1.50702 * 119.99820 * 179.97438 * 15 14 13 18 18 H 1.09005 * 109.47201 * 304.99650 * 17 15 14 19 19 C 1.52997 * 109.47250 * 64.99827 * 17 15 14 20 20 O 1.42906 * 109.46768 * 184.99885 * 17 15 14 21 21 C 1.42901 * 113.99522 * 149.99714 * 20 17 15 22 22 C 1.50702 * 109.46665 * 179.97438 * 21 20 17 23 23 C 1.38264 * 120.00316 * 269.98022 * 22 21 20 24 24 C 1.38206 * 120.00090 * 180.02562 * 23 22 21 25 25 C 1.38266 * 120.00054 * 359.74649 * 24 23 22 26 26 C 1.38216 * 119.99513 * 0.52745 * 25 24 23 27 27 C 1.50697 * 119.99524 * 179.74126 * 26 25 24 28 28 C 1.38217 * 120.00062 * 90.00268 * 22 21 20 29 29 H 1.09004 * 109.46922 * 59.99955 * 1 2 3 30 30 H 1.09004 * 109.46797 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47245 * 299.99933 * 1 2 3 32 32 H 1.09006 * 109.47232 * 240.00731 * 2 1 3 33 33 H 1.08992 * 109.47281 * 120.00063 * 2 1 3 34 34 H 0.96997 * 120.00347 * 179.97438 * 7 6 4 35 35 H 1.09003 * 109.47344 * 150.00040 * 12 3 2 36 36 H 1.09003 * 109.47626 * 30.00292 * 12 3 2 37 37 H 1.09001 * 109.46588 * 60.00230 * 13 12 3 38 38 H 1.08995 * 109.46897 * 300.00435 * 13 12 3 39 39 H 0.96998 * 120.00152 * 359.97438 * 14 13 12 40 40 H 1.09001 * 109.47296 * 299.99526 * 19 17 15 41 41 H 1.08996 * 109.47420 * 59.99932 * 19 17 15 42 42 H 1.08996 * 109.46850 * 179.97438 * 19 17 15 43 43 H 1.09004 * 109.47050 * 60.00185 * 21 20 17 44 44 H 1.08993 * 109.47811 * 299.99744 * 21 20 17 45 45 H 1.08004 * 119.99740 * 359.97438 * 23 22 21 46 46 H 1.07997 * 120.00213 * 179.97438 * 24 23 22 47 47 H 1.07993 * 120.00144 * 180.27062 * 25 24 23 48 48 H 1.09004 * 109.47454 * 269.72698 * 27 26 25 49 49 H 1.08997 * 109.47413 * 29.73179 * 27 26 25 50 50 H 1.09000 * 109.47244 * 149.73031 * 27 26 25 51 51 H 1.07997 * 119.99341 * 359.97438 * 28 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.3578 1.9875 -1.1800 5 1 2.8470 2.9503 -1.1713 6 6 2.0731 1.3645 -2.3874 7 7 1.0959 0.4858 -2.4602 8 14 3.0770 1.7733 -3.9088 9 1 4.3046 0.9380 -3.9309 10 1 2.2688 1.4979 -5.1238 11 1 3.4555 3.2090 -3.8811 12 6 2.1434 2.1139 1.2624 13 6 0.8337 2.8474 1.5585 14 7 0.9591 3.5805 2.8206 15 6 -0.0785 4.3043 3.2854 16 8 -1.1157 4.3491 2.6585 17 6 0.0503 5.0580 4.5840 18 1 0.3521 4.3708 5.3746 19 6 1.1041 6.1569 4.4336 20 8 -1.2078 5.6470 4.9196 21 6 -1.4297 5.7824 6.3248 22 6 -2.7783 6.4117 6.5619 23 6 -2.8944 7.7869 6.6458 24 6 -4.1312 8.3640 6.8638 25 6 -5.2532 7.5664 6.9928 26 6 -5.1362 6.1914 6.9145 27 6 -6.3582 5.3218 7.0609 28 6 -3.8992 5.6142 6.6960 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8934 -0.5137 -0.8901 33 1 1.8934 -0.5138 0.8899 34 1 0.8967 0.0508 -3.3040 35 1 2.9551 2.8372 1.1839 36 1 2.3579 1.4133 2.0695 37 1 0.0221 2.1241 1.6370 38 1 0.6193 3.5480 0.7515 39 1 1.7885 3.5444 3.3221 40 1 2.0636 5.7076 4.1777 41 1 0.8023 6.8441 3.6432 42 1 1.1968 6.7023 5.3728 43 1 -0.6533 6.4144 6.7560 44 1 -1.3998 4.7990 6.7938 45 1 -2.0185 8.4101 6.5418 46 1 -4.2218 9.4381 6.9298 47 1 -6.2202 8.0175 7.1588 48 1 -6.4967 5.0634 8.1108 49 1 -7.2339 5.8620 6.7011 50 1 -6.2280 4.4108 6.4767 51 1 -3.8084 4.5400 6.6304 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001480992272.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:00:36 Heat of formation + Delta-G solvation = -54.843381 kcal Electronic energy + Delta-G solvation = -28185.929897 eV Core-core repulsion = 24278.356981 eV Total energy + Delta-G solvation = -3907.572916 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -41.06709 -40.35948 -38.69553 -38.07566 -35.83966 -34.17976 -33.43521 -32.88539 -31.94726 -31.27080 -29.19051 -27.95559 -27.13227 -26.13997 -24.94251 -23.29808 -23.03927 -22.21124 -21.66307 -21.30541 -18.78212 -18.37747 -18.08248 -17.38740 -17.00178 -16.86226 -16.54129 -16.30768 -15.97698 -15.71546 -15.36199 -15.29728 -15.00931 -14.62335 -14.37996 -14.25685 -13.99102 -13.92088 -13.75039 -13.66583 -13.41299 -13.27058 -13.16702 -12.89703 -12.87300 -12.81012 -12.67745 -12.42532 -12.28019 -12.20087 -11.93949 -11.82159 -11.78100 -11.56242 -11.34224 -11.04024 -10.53651 -10.36356 -10.06219 -9.80486 -9.56009 -8.88809 -7.80859 -5.14504 0.29737 0.45547 1.49602 1.51655 1.58558 1.59046 1.89805 2.54523 2.68643 3.16747 3.28168 3.60353 3.79158 3.82606 3.88462 3.96572 4.04230 4.09159 4.20822 4.24370 4.33233 4.33871 4.36445 4.50097 4.59233 4.66526 4.71272 4.72625 4.79001 4.79962 4.82557 4.94857 4.95440 5.09605 5.12269 5.13548 5.20467 5.22045 5.27496 5.31564 5.47687 5.52261 5.62080 5.63008 5.66375 5.80120 6.05675 6.10856 6.13475 6.35785 6.62360 7.20646 7.29171 7.91401 8.30260 9.20874 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.018476 B = 0.001953 C = 0.001885 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1515.141886 B =14331.927906 C =14850.732293 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.168 3.832 3 N -0.607 5.607 4 C -0.260 4.260 5 H 0.076 0.924 6 C -0.053 4.053 7 N -0.917 5.917 8 Si 0.959 3.041 9 H -0.285 1.285 10 H -0.302 1.302 11 H -0.276 1.276 12 C 0.146 3.854 13 C 0.111 3.889 14 N -0.704 5.704 15 C 0.500 3.500 16 O -0.585 6.585 17 C 0.077 3.923 18 H 0.123 0.877 19 C -0.164 4.164 20 O -0.385 6.385 21 C 0.098 3.902 22 C -0.105 4.105 23 C -0.116 4.116 24 C -0.126 4.126 25 C -0.124 4.124 26 C -0.104 4.104 27 C -0.114 4.114 28 C -0.119 4.119 29 H 0.053 0.947 30 H 0.034 0.966 31 H 0.020 0.980 32 H 0.060 0.940 33 H 0.033 0.967 34 H 0.246 0.754 35 H 0.066 0.934 36 H 0.075 0.925 37 H 0.040 0.960 38 H 0.025 0.975 39 H 0.418 0.582 40 H 0.095 0.905 41 H 0.047 0.953 42 H 0.095 0.905 43 H 0.087 0.913 44 H 0.070 0.930 45 H 0.137 0.863 46 H 0.146 0.854 47 H 0.142 0.858 48 H 0.083 0.917 49 H 0.076 0.924 50 H 0.062 0.938 51 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.137 12.297 26.217 29.252 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.043 3.957 3 N -0.328 5.328 4 C -0.390 4.390 5 H 0.093 0.907 6 C -0.248 4.248 7 N -0.564 5.564 8 Si 0.789 3.211 9 H -0.212 1.212 10 H -0.229 1.229 11 H -0.201 1.201 12 C 0.019 3.981 13 C -0.016 4.016 14 N -0.359 5.359 15 C 0.286 3.714 16 O -0.465 6.465 17 C 0.016 3.984 18 H 0.141 0.859 19 C -0.222 4.222 20 O -0.305 6.305 21 C 0.022 3.978 22 C -0.105 4.105 23 C -0.134 4.134 24 C -0.144 4.144 25 C -0.142 4.142 26 C -0.104 4.104 27 C -0.170 4.170 28 C -0.137 4.137 29 H 0.072 0.928 30 H 0.053 0.947 31 H 0.039 0.961 32 H 0.079 0.921 33 H 0.051 0.949 34 H 0.055 0.945 35 H 0.084 0.916 36 H 0.093 0.907 37 H 0.058 0.942 38 H 0.044 0.956 39 H 0.256 0.744 40 H 0.114 0.886 41 H 0.066 0.934 42 H 0.114 0.886 43 H 0.105 0.895 44 H 0.088 0.912 45 H 0.155 0.845 46 H 0.164 0.836 47 H 0.160 0.840 48 H 0.101 0.899 49 H 0.095 0.905 50 H 0.081 0.919 51 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -5.025 12.281 25.482 28.730 hybrid contribution 0.364 -0.087 -1.143 1.203 sum -4.661 12.195 24.339 27.619 Atomic orbital electron populations 1.22247 0.99317 0.98698 0.99622 1.20751 0.92344 0.84404 0.98201 1.44437 1.75572 1.10543 1.02271 1.19543 1.31051 1.03803 0.84595 0.90658 1.25440 0.98755 1.00707 0.99938 1.70333 1.28125 1.32936 1.24998 0.85397 0.78586 0.77795 0.79357 1.21227 1.22916 1.20088 1.21106 0.93512 0.95090 0.88393 1.22164 1.01353 0.94120 0.83953 1.45825 1.16565 1.49205 1.24310 1.21325 0.83142 0.79045 0.87859 1.90711 1.30995 1.63963 1.60792 1.22035 0.86104 0.96298 0.93978 0.85923 1.22239 0.97688 0.98047 1.04188 1.88127 1.36266 1.81867 1.24212 1.21611 0.94294 1.00598 0.81277 1.19804 0.94851 0.94436 1.01376 1.21310 0.98920 0.93939 0.99219 1.21466 0.92311 1.01113 0.99506 1.21408 0.99806 0.92979 0.99996 1.20252 0.95529 0.95133 0.99463 1.20830 0.94474 0.98695 1.03031 1.21158 0.92430 1.00045 1.00077 0.92845 0.94693 0.96120 0.92150 0.94930 0.94465 0.91559 0.90710 0.94163 0.95607 0.74417 0.88647 0.93392 0.88583 0.89531 0.91204 0.84517 0.83649 0.83995 0.89854 0.90473 0.91903 0.86203 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.63 9.58 71.98 0.69 -5.94 16 2 C 0.17 7.96 5.64 86.38 0.49 8.44 16 3 N -0.61 -28.92 2.54 -702.00 -1.78 -30.70 16 4 C -0.26 -13.84 9.70 84.03 0.82 -13.03 16 5 H 0.08 3.91 7.93 -2.91 -0.02 3.89 16 6 C -0.05 -2.93 4.91 84.86 0.42 -2.51 16 7 N -0.92 -52.54 8.54 21.65 0.18 -52.35 16 8 Si 0.96 44.77 29.62 68.60 2.03 46.80 16 9 H -0.29 -13.06 7.11 99.48 0.71 -12.35 16 10 H -0.30 -14.43 7.11 99.48 0.71 -13.73 16 11 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 12 C 0.15 5.34 5.82 86.38 0.50 5.85 16 13 C 0.11 4.27 5.88 86.38 0.51 4.78 16 14 N -0.70 -19.91 5.52 -463.07 -2.55 -22.46 16 15 C 0.50 16.12 7.18 87.66 0.63 16.75 16 16 O -0.59 -26.61 16.51 15.98 0.26 -26.35 16 17 C 0.08 1.64 3.13 29.85 0.09 1.73 16 18 H 0.12 1.65 7.79 -2.38 -0.02 1.64 16 19 C -0.16 -2.53 9.48 71.98 0.68 -1.85 16 20 O -0.39 -10.29 9.51 -129.99 -1.24 -11.53 16 21 C 0.10 1.79 5.87 71.24 0.42 2.21 16 22 C -0.10 -2.21 5.51 -19.86 -0.11 -2.32 16 23 C -0.12 -2.14 9.70 22.27 0.22 -1.93 16 24 C -0.13 -2.08 10.05 22.27 0.22 -1.86 16 25 C -0.12 -2.09 9.70 22.27 0.22 -1.87 16 26 C -0.10 -1.98 5.88 -19.87 -0.12 -2.09 16 27 C -0.11 -1.62 10.01 71.23 0.71 -0.90 16 28 C -0.12 -2.58 9.36 22.27 0.21 -2.38 16 29 H 0.05 2.96 6.28 -2.38 -0.01 2.95 16 30 H 0.03 1.50 8.14 -2.38 -0.02 1.48 16 31 H 0.02 0.92 5.98 -2.39 -0.01 0.90 16 32 H 0.06 3.22 5.87 -2.38 -0.01 3.21 16 33 H 0.03 1.34 7.97 -2.39 -0.02 1.32 16 34 H 0.25 13.86 8.31 -92.71 -0.77 13.09 16 35 H 0.07 2.22 8.03 -2.39 -0.02 2.20 16 36 H 0.07 2.29 7.95 -2.39 -0.02 2.27 16 37 H 0.04 1.76 5.93 -2.39 -0.01 1.75 16 38 H 0.03 1.20 8.14 -2.39 -0.02 1.18 16 39 H 0.42 7.72 8.26 -92.71 -0.77 6.95 16 40 H 0.09 1.05 7.93 -2.39 -0.02 1.04 16 41 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 42 H 0.10 0.96 7.87 -2.39 -0.02 0.94 16 43 H 0.09 1.06 7.81 -2.38 -0.02 1.04 16 44 H 0.07 1.07 8.03 -2.39 -0.02 1.05 16 45 H 0.14 1.98 8.06 -2.91 -0.02 1.96 16 46 H 0.15 1.61 8.06 -2.91 -0.02 1.59 16 47 H 0.14 1.67 8.06 -2.91 -0.02 1.65 16 48 H 0.08 0.94 8.14 -2.38 -0.02 0.92 16 49 H 0.08 0.91 8.08 -2.39 -0.02 0.89 16 50 H 0.06 0.95 8.09 -2.39 -0.02 0.93 16 51 H 0.12 2.50 8.06 -2.91 -0.02 2.48 16 Total: -1.00 -76.69 413.86 3.65 -73.04 By element: Atomic # 1 Polarization: 20.31 SS G_CDS: 0.14 Total: 20.45 kcal Atomic # 6 Polarization: -3.51 SS G_CDS: 6.59 Total: 3.08 kcal Atomic # 7 Polarization: -101.36 SS G_CDS: -4.15 Total: -105.51 kcal Atomic # 8 Polarization: -36.90 SS G_CDS: -0.97 Total: -37.87 kcal Atomic # 14 Polarization: 44.77 SS G_CDS: 2.03 Total: 46.80 kcal Total: -76.69 3.65 -73.04 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001480992272.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.199 kcal (2) G-P(sol) polarization free energy of solvation -76.688 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.489 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.646 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.043 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds