Wall clock time and date at job start Tue Mar 31 2020 18:52:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46502 * 109.47333 * 2 1 4 4 C 1.36940 * 119.99905 * 264.28845 * 3 2 1 5 5 H 1.07997 * 119.99635 * 188.63420 * 4 3 2 6 6 C 1.38806 * 120.00082 * 8.63656 * 4 3 2 7 7 N 1.31621 * 119.99855 * 24.60249 * 6 4 3 8 8 Si 1.86794 * 120.00058 * 204.60240 * 6 4 3 9 9 H 1.48505 * 109.47193 * 85.02777 * 8 6 4 10 10 H 1.48501 * 109.47189 * 205.02623 * 8 6 4 11 11 H 1.48497 * 109.47287 * 325.02621 * 8 6 4 12 12 C 1.46501 * 119.99809 * 84.28721 * 3 2 1 13 13 C 1.53004 * 109.47121 * 270.00053 * 12 3 2 14 14 N 1.46501 * 109.47178 * 180.02562 * 13 12 3 15 15 C 1.34771 * 119.99581 * 180.02562 * 14 13 12 16 16 O 1.21586 * 120.00542 * 359.97438 * 15 14 13 17 17 C 1.47539 * 119.99434 * 179.97438 * 15 14 13 18 18 C 1.39700 * 120.19623 * 359.97438 * 17 15 14 19 19 C 1.37781 * 119.91279 * 180.02562 * 18 17 15 20 20 C 1.38545 * 120.30122 * 359.97282 * 19 18 17 21 21 C 1.38058 * 120.38751 * 0.03004 * 20 19 18 22 22 C 1.38710 * 120.08704 * 359.97438 * 21 20 19 23 23 O 1.35653 * 120.15056 * 180.02562 * 22 21 20 24 24 C 1.42900 * 117.00256 * 359.97438 * 23 22 21 25 25 C 1.52995 * 109.47181 * 179.97438 * 24 23 22 26 26 C 1.53000 * 109.47160 * 174.99633 * 25 24 23 27 27 C 1.53000 * 109.47407 * 295.00266 * 25 24 23 28 28 H 1.09001 * 109.47226 * 300.00507 * 1 2 3 29 29 H 1.09007 * 109.46946 * 60.00205 * 1 2 3 30 30 H 1.09001 * 109.47201 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47814 * 239.99968 * 2 1 3 32 32 H 1.08999 * 109.47195 * 119.99547 * 2 1 3 33 33 H 0.97004 * 120.00106 * 179.97438 * 7 6 4 34 34 H 1.09002 * 109.46664 * 150.00681 * 12 3 2 35 35 H 1.08995 * 109.47618 * 30.00190 * 12 3 2 36 36 H 1.09000 * 109.46742 * 59.99778 * 13 12 3 37 37 H 1.09004 * 109.46892 * 300.00288 * 13 12 3 38 38 H 0.97000 * 120.00053 * 359.97438 * 14 13 12 39 39 H 1.08006 * 120.04559 * 0.02562 * 18 17 15 40 40 H 1.08004 * 119.85443 * 180.02562 * 19 18 17 41 41 H 1.08002 * 119.80653 * 179.74608 * 20 19 18 42 42 H 1.08004 * 119.95476 * 179.97438 * 21 20 19 43 43 H 1.08999 * 109.46655 * 300.00111 * 24 23 22 44 44 H 1.09000 * 109.46637 * 59.99530 * 24 23 22 45 45 H 1.09012 * 109.46882 * 54.99878 * 25 24 23 46 46 H 1.09000 * 109.46707 * 60.00127 * 26 25 24 47 47 H 1.09000 * 109.47017 * 180.02562 * 26 25 24 48 48 H 1.08997 * 109.47152 * 299.99987 * 26 25 24 49 49 H 1.09004 * 109.46439 * 299.99727 * 27 25 24 50 50 H 1.09000 * 109.47398 * 59.99597 * 27 25 24 51 51 H 1.09000 * 109.47031 * 180.02562 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3579 1.9874 -1.1801 5 1 2.8470 2.9502 -1.1713 6 6 2.0732 1.3644 -2.3874 7 7 1.0960 0.4857 -2.4602 8 14 3.0771 1.7730 -3.9087 9 1 4.3047 0.9377 -3.9308 10 1 2.2690 1.4975 -5.1237 11 1 3.4557 3.2087 -3.8811 12 6 2.1434 2.1139 1.2625 13 6 0.8337 2.8474 1.5584 14 7 0.9590 3.5806 2.8205 15 6 -0.0786 4.3044 3.2852 16 8 -1.1184 4.3493 2.6567 17 6 0.0475 5.0423 4.5565 18 6 1.2402 4.9931 5.2822 19 6 1.3513 5.6840 6.4691 20 6 0.2852 6.4287 6.9469 21 6 -0.8992 6.4859 6.2399 22 6 -1.0287 5.7965 5.0432 23 8 -2.1918 5.8523 4.3472 24 6 -3.2448 6.6407 4.9054 25 6 -4.4667 6.5836 3.9865 26 6 -5.6337 7.3238 4.6432 27 6 -4.1305 7.2460 2.6490 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3634 -1.0277 -0.0005 31 1 1.8934 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 0.8968 0.0506 -3.3040 34 1 2.9552 2.8371 1.1838 35 1 2.3578 1.4134 2.0695 36 1 0.0220 2.1242 1.6368 37 1 0.6194 3.5481 0.7513 38 1 1.7885 3.5445 3.3221 39 1 2.0741 4.4143 4.9134 40 1 2.2740 5.6457 7.0292 41 1 0.3796 6.9639 7.8802 42 1 -1.7260 7.0683 6.6191 43 1 -3.5098 6.2497 5.8877 44 1 -2.9121 7.6741 5.0033 45 1 -4.7455 5.5435 3.8169 46 1 -5.3549 8.3638 4.8128 47 1 -6.5044 7.2827 3.9887 48 1 -5.8733 6.8518 5.5960 49 1 -3.8517 8.2861 2.8186 50 1 -3.2991 6.7187 2.1811 51 1 -5.0012 7.2057 1.9945 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001481006258.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:52:44 Heat of formation + Delta-G solvation = -47.383108 kcal Electronic energy + Delta-G solvation = -28996.006118 eV Core-core repulsion = 25088.756704 eV Total energy + Delta-G solvation = -3907.249414 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.58815 -40.13353 -38.56613 -38.14238 -36.24372 -35.71920 -33.42032 -32.41569 -31.34521 -30.91830 -29.23935 -28.10839 -27.52103 -26.08949 -24.81857 -23.55457 -22.85798 -22.21105 -21.66448 -20.93706 -19.49007 -18.74329 -18.18789 -17.41456 -17.09741 -16.86020 -16.43580 -16.29582 -15.95539 -15.64090 -15.58767 -15.28344 -15.21552 -14.85985 -14.52301 -14.36720 -14.02164 -13.85167 -13.75178 -13.54787 -13.31759 -13.26871 -13.04066 -12.88326 -12.73920 -12.67531 -12.30863 -12.27822 -12.22088 -12.16828 -12.06903 -11.82245 -11.64703 -11.58573 -11.56002 -11.34655 -10.85404 -10.38416 -10.17132 -9.91623 -9.19951 -8.89524 -7.81108 -5.15058 -0.10558 0.43677 1.49356 1.51254 1.58442 1.94669 2.16804 2.24227 2.57143 2.88860 3.27627 3.64121 3.70340 3.80607 3.81650 3.90418 4.06730 4.08002 4.20626 4.22810 4.33914 4.38782 4.45658 4.48817 4.57439 4.60536 4.65060 4.71085 4.74343 4.86919 4.91836 4.94173 4.96836 5.08423 5.12266 5.16131 5.19283 5.21648 5.30944 5.31999 5.34968 5.37967 5.48444 5.49766 5.62550 5.79280 5.81108 6.12403 6.35186 6.44746 6.66655 7.20205 7.34011 7.90445 8.29848 9.20706 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.012408 B = 0.002642 C = 0.002361 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2256.053502 B =10594.307795 C =11858.634734 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.168 3.832 3 N -0.606 5.606 4 C -0.262 4.262 5 H 0.074 0.926 6 C -0.052 4.052 7 N -0.917 5.917 8 Si 0.960 3.040 9 H -0.285 1.285 10 H -0.301 1.301 11 H -0.276 1.276 12 C 0.147 3.853 13 C 0.115 3.885 14 N -0.710 5.710 15 C 0.544 3.456 16 O -0.575 6.575 17 C -0.202 4.202 18 C -0.047 4.047 19 C -0.164 4.164 20 C -0.045 4.045 21 C -0.224 4.224 22 C 0.160 3.840 23 O -0.311 6.311 24 C 0.052 3.948 25 C -0.096 4.096 26 C -0.136 4.136 27 C -0.145 4.145 28 H 0.018 0.982 29 H 0.053 0.947 30 H 0.035 0.965 31 H 0.062 0.938 32 H 0.032 0.968 33 H 0.246 0.754 34 H 0.064 0.936 35 H 0.073 0.927 36 H 0.040 0.960 37 H 0.025 0.975 38 H 0.412 0.588 39 H 0.153 0.847 40 H 0.164 0.836 41 H 0.166 0.834 42 H 0.154 0.846 43 H 0.079 0.921 44 H 0.078 0.922 45 H 0.059 0.941 46 H 0.070 0.930 47 H 0.067 0.933 48 H 0.068 0.932 49 H 0.065 0.935 50 H 0.028 0.972 51 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.666 14.293 24.729 28.796 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.043 3.957 3 N -0.328 5.328 4 C -0.392 4.392 5 H 0.092 0.908 6 C -0.247 4.247 7 N -0.564 5.564 8 Si 0.790 3.210 9 H -0.211 1.211 10 H -0.228 1.228 11 H -0.201 1.201 12 C 0.019 3.981 13 C -0.012 4.012 14 N -0.364 5.364 15 C 0.333 3.667 16 O -0.456 6.456 17 C -0.206 4.206 18 C -0.066 4.066 19 C -0.182 4.182 20 C -0.063 4.063 21 C -0.243 4.243 22 C 0.112 3.888 23 O -0.224 6.224 24 C -0.022 4.022 25 C -0.114 4.114 26 C -0.193 4.193 27 C -0.202 4.202 28 H 0.037 0.963 29 H 0.072 0.928 30 H 0.054 0.946 31 H 0.080 0.920 32 H 0.050 0.950 33 H 0.056 0.944 34 H 0.082 0.918 35 H 0.091 0.909 36 H 0.058 0.942 37 H 0.043 0.957 38 H 0.250 0.750 39 H 0.170 0.830 40 H 0.182 0.818 41 H 0.184 0.816 42 H 0.172 0.828 43 H 0.097 0.903 44 H 0.096 0.904 45 H 0.078 0.922 46 H 0.089 0.911 47 H 0.086 0.914 48 H 0.087 0.913 49 H 0.084 0.916 50 H 0.047 0.953 51 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -4.490 14.122 23.914 28.133 hybrid contribution 0.208 -0.038 -1.284 1.302 sum -4.282 14.084 22.629 26.996 Atomic orbital electron populations 1.22240 0.99299 0.98694 0.99578 1.20753 0.92370 0.84360 0.98193 1.44432 1.75617 1.10552 1.02194 1.19543 1.31175 1.03829 0.84630 0.90796 1.25438 0.98718 1.00646 0.99914 1.70342 1.28100 1.32911 1.25024 0.85380 0.78589 0.77785 0.79279 1.21148 1.22776 1.20135 1.21085 0.93499 0.95017 0.88455 1.22118 1.01272 0.94030 0.83802 1.45809 1.16501 1.49726 1.24384 1.18700 0.83294 0.79060 0.85605 1.90790 1.30134 1.64267 1.60360 1.19458 0.96452 1.06809 0.97903 1.21481 0.94444 0.96544 0.94115 1.21416 1.01091 0.99179 0.96470 1.21617 0.90898 0.94630 0.99146 1.21525 1.02082 1.05333 0.95323 1.19432 0.85427 0.92939 0.91011 1.86366 1.20875 1.66933 1.48191 1.23223 0.86152 0.95249 0.97594 1.21133 0.94213 1.00711 0.95365 1.21729 0.96078 1.00548 1.00953 1.21775 1.01062 1.00477 0.96898 0.96282 0.92787 0.94635 0.92020 0.95031 0.94426 0.91750 0.90873 0.94196 0.95655 0.75027 0.82992 0.81838 0.81632 0.82847 0.90307 0.90434 0.92200 0.91061 0.91381 0.91252 0.91567 0.95287 0.91923 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.78 9.58 71.98 0.69 -6.09 16 2 C 0.17 8.20 5.64 86.38 0.49 8.68 16 3 N -0.61 -29.92 2.54 -702.01 -1.78 -31.70 16 4 C -0.26 -14.31 9.70 84.03 0.82 -13.49 16 5 H 0.07 3.95 7.93 -2.91 -0.02 3.93 16 6 C -0.05 -2.90 4.91 84.86 0.42 -2.49 16 7 N -0.92 -53.24 8.54 21.65 0.18 -53.05 16 8 Si 0.96 45.41 29.62 68.60 2.03 47.44 16 9 H -0.28 -13.16 7.11 99.48 0.71 -12.46 16 10 H -0.30 -14.48 7.11 99.48 0.71 -13.77 16 11 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 12 C 0.15 5.72 5.82 86.38 0.50 6.23 16 13 C 0.11 4.74 5.88 86.38 0.51 5.25 16 14 N -0.71 -23.36 5.51 -466.26 -2.57 -25.93 16 15 C 0.54 20.22 7.76 86.70 0.67 20.89 16 16 O -0.58 -27.27 15.16 16.93 0.26 -27.01 16 17 C -0.20 -5.73 5.89 -20.01 -0.12 -5.85 16 18 C -0.05 -0.89 9.53 22.51 0.21 -0.67 16 19 C -0.16 -2.13 10.02 22.23 0.22 -1.91 16 20 C -0.04 -0.56 10.03 22.30 0.22 -0.33 16 21 C -0.22 -3.91 9.03 22.34 0.20 -3.71 16 22 C 0.16 4.31 6.70 22.85 0.15 4.46 16 23 O -0.31 -9.61 7.74 -68.76 -0.53 -10.14 16 24 C 0.05 1.06 4.12 71.98 0.30 1.36 16 25 C -0.10 -1.97 3.16 -10.80 -0.03 -2.00 16 26 C -0.14 -1.74 9.19 71.98 0.66 -1.08 16 27 C -0.14 -3.42 9.09 71.98 0.65 -2.77 16 28 H 0.02 0.87 5.98 -2.39 -0.01 0.86 16 29 H 0.05 3.05 6.28 -2.38 -0.01 3.04 16 30 H 0.03 1.56 8.14 -2.39 -0.02 1.54 16 31 H 0.06 3.36 5.87 -2.39 -0.01 3.34 16 32 H 0.03 1.35 7.97 -2.39 -0.02 1.33 16 33 H 0.25 14.02 8.31 -92.71 -0.77 13.25 16 34 H 0.06 2.33 8.03 -2.39 -0.02 2.31 16 35 H 0.07 2.43 7.95 -2.39 -0.02 2.41 16 36 H 0.04 1.86 5.93 -2.39 -0.01 1.84 16 37 H 0.02 1.24 8.14 -2.38 -0.02 1.22 16 38 H 0.41 9.80 6.50 -92.71 -0.60 9.20 16 39 H 0.15 2.08 6.40 -2.91 -0.02 2.06 16 40 H 0.16 1.02 8.06 -2.91 -0.02 1.00 16 41 H 0.17 0.79 8.06 -2.91 -0.02 0.77 16 42 H 0.15 1.87 6.30 -2.91 -0.02 1.85 16 43 H 0.08 1.25 7.66 -2.39 -0.02 1.23 16 44 H 0.08 1.26 7.66 -2.39 -0.02 1.24 16 45 H 0.06 1.49 8.14 -2.38 -0.02 1.47 16 46 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 47 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 48 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 49 H 0.07 1.31 8.14 -2.38 -0.02 1.29 16 50 H 0.03 0.92 7.82 -2.39 -0.02 0.90 16 51 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 Total: -1.00 -76.96 404.35 4.48 -72.48 By element: Atomic # 1 Polarization: 21.12 SS G_CDS: 0.31 Total: 21.43 kcal Atomic # 6 Polarization: -0.09 SS G_CDS: 6.57 Total: 6.48 kcal Atomic # 7 Polarization: -106.52 SS G_CDS: -4.16 Total: -110.68 kcal Atomic # 8 Polarization: -36.87 SS G_CDS: -0.28 Total: -37.15 kcal Atomic # 14 Polarization: 45.41 SS G_CDS: 2.03 Total: 47.44 kcal Total: -76.96 4.48 -72.48 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481006258.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.096 kcal (2) G-P(sol) polarization free energy of solvation -76.956 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.860 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.477 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.479 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.383 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds