Wall clock time and date at job start Tue Mar 31 2020 18:51:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46500 * 109.47191 * 2 1 4 4 C 1.46498 * 119.99876 * 269.99975 * 3 2 1 5 5 C 1.52996 * 109.47115 * 270.00358 * 4 3 2 6 6 N 1.46507 * 109.47111 * 180.02562 * 5 4 3 7 7 C 1.36942 * 119.99519 * 179.97438 * 6 5 4 8 8 H 1.07996 * 120.00383 * 0.02562 * 7 6 5 9 9 C 1.38813 * 119.99344 * 179.97438 * 7 6 5 10 10 N 1.31621 * 120.00100 * 0.02562 * 9 7 6 11 11 Si 1.86801 * 119.99800 * 180.02562 * 9 7 6 12 12 H 1.48496 * 109.46917 * 90.00115 * 11 9 7 13 13 H 1.48500 * 109.47185 * 210.00006 * 11 9 7 14 14 H 1.48495 * 109.47069 * 330.00231 * 11 9 7 15 15 C 1.34773 * 119.99942 * 89.99901 * 3 2 1 16 16 O 1.21283 * 119.99693 * 179.97438 * 15 3 2 17 17 C 1.50703 * 120.00193 * 0.02562 * 15 3 2 18 18 C 1.52998 * 109.47225 * 179.97438 * 17 15 3 19 19 O 1.42901 * 109.47046 * 179.97438 * 18 17 15 20 20 C 1.35905 * 116.99604 * 179.97438 * 19 18 17 21 21 C 1.38722 * 120.05728 * 359.72917 * 20 19 18 22 22 C 1.38150 * 119.94161 * 179.74227 * 21 20 19 23 23 C 1.50704 * 119.97223 * 180.27212 * 22 21 20 24 24 C 1.38261 * 120.05672 * 0.50783 * 22 21 20 25 25 C 1.38268 * 120.10988 * 359.76619 * 24 22 21 26 26 C 1.50704 * 119.97155 * 180.02562 * 25 24 22 27 27 C 1.38139 * 120.05525 * 359.97438 * 25 24 22 28 28 H 1.09001 * 109.47307 * 59.99674 * 1 2 3 29 29 H 1.09000 * 109.47694 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.46992 * 299.99900 * 1 2 3 31 31 H 1.08999 * 109.46868 * 239.99565 * 2 1 3 32 32 H 1.08996 * 109.46866 * 120.00170 * 2 1 3 33 33 H 1.09001 * 109.47170 * 29.99884 * 4 3 2 34 34 H 1.09002 * 109.47096 * 149.99862 * 4 3 2 35 35 H 1.09006 * 109.47153 * 299.99960 * 5 4 3 36 36 H 1.09002 * 109.47543 * 59.99778 * 5 4 3 37 37 H 0.96998 * 119.99931 * 359.97438 * 6 5 4 38 38 H 0.97002 * 119.99688 * 179.97438 * 10 9 7 39 39 H 1.08998 * 109.47163 * 59.99285 * 17 15 3 40 40 H 1.09007 * 109.46696 * 299.99522 * 17 15 3 41 41 H 1.08996 * 109.47090 * 59.99528 * 18 17 15 42 42 H 1.08999 * 109.47084 * 299.99701 * 18 17 15 43 43 H 1.08006 * 120.03385 * 359.97438 * 21 20 19 44 44 H 1.08993 * 109.47290 * 270.23243 * 23 22 21 45 45 H 1.09000 * 109.46914 * 30.23522 * 23 22 21 46 46 H 1.09002 * 109.47052 * 150.23293 * 23 22 21 47 47 H 1.08001 * 119.94795 * 179.74501 * 24 22 21 48 48 H 1.08998 * 109.46840 * 269.97937 * 26 25 24 49 49 H 1.09003 * 109.47240 * 29.97753 * 26 25 24 50 50 H 1.08994 * 109.46878 * 149.97626 * 26 25 24 51 51 H 1.08005 * 120.02930 * 179.97438 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2625 2.0718 -1.2687 5 6 3.7075 1.8313 -1.7104 6 7 3.9518 2.5224 -2.9789 7 6 5.1843 2.4502 -3.5715 8 1 5.9759 1.8836 -3.1041 9 6 5.4156 3.1046 -4.7737 10 7 4.4506 3.7948 -5.3436 11 14 7.0965 3.0057 -5.5825 12 1 7.1377 1.8363 -6.4969 13 1 7.3475 4.2481 -6.3562 14 1 8.1405 2.8539 -4.5375 15 6 2.2430 2.0165 1.1672 16 8 2.6477 3.1598 1.1671 17 6 1.9923 1.3060 2.4723 18 6 2.3242 2.2432 3.6352 19 8 2.0860 1.5695 4.8728 20 6 2.3336 2.2671 6.0125 21 6 2.8017 3.5711 5.9412 22 6 3.0476 4.2798 7.1013 23 6 3.5503 5.6985 7.0246 24 6 2.8376 3.6871 8.3326 25 6 2.3765 2.3856 8.4063 26 6 2.1480 1.7428 9.7501 27 6 2.1240 1.6745 7.2493 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 1.5817 1.6876 -2.0284 34 1 2.0956 3.1410 -1.1384 35 1 4.3884 2.2154 -0.9508 36 1 3.8745 0.7620 -1.8407 37 1 3.2407 3.0310 -3.3989 38 1 4.6124 4.2524 -6.1835 39 1 2.6228 0.4187 2.5298 40 1 0.9444 1.0115 2.5302 41 1 1.6941 3.1307 3.5778 42 1 3.3722 2.5373 3.5771 43 1 2.9702 4.0331 4.9796 44 1 4.6401 5.6973 7.0062 45 1 3.1720 6.1694 6.1173 46 1 3.2022 6.2548 7.8949 47 1 3.0343 4.2414 9.2384 48 1 3.0615 1.2444 10.0744 49 1 1.8738 2.5075 10.4768 50 1 1.3436 1.0117 9.6710 51 1 1.7642 0.6578 7.3073 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001482927077.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:51:38 Heat of formation + Delta-G solvation = -52.199798 kcal Electronic energy + Delta-G solvation = -27887.710993 eV Core-core repulsion = 23980.252711 eV Total energy + Delta-G solvation = -3907.458282 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.56547 -39.91681 -38.07101 -36.28825 -34.64116 -33.83641 -32.69374 -31.66174 -30.59773 -30.33461 -27.82587 -27.50721 -27.09062 -24.76662 -23.69386 -23.04569 -21.96257 -21.47560 -20.70537 -18.94840 -17.95923 -17.21671 -16.84208 -16.64612 -16.35094 -16.13822 -15.85864 -15.16405 -14.59090 -14.22541 -14.19062 -13.98991 -13.86231 -13.69140 -13.58813 -13.51426 -13.38695 -13.27359 -12.96611 -12.86876 -12.83378 -12.49754 -12.24255 -12.06683 -11.81347 -11.68881 -11.67528 -11.29385 -11.23270 -11.02782 -10.97240 -10.88393 -10.77020 -10.67444 -10.11227 -9.84379 -9.68855 -8.88335 -8.87048 -8.58403 -8.37616 -6.93044 -5.75851 -3.05118 1.05839 1.20974 2.60818 2.64106 3.27690 3.44529 3.46631 3.49674 3.51844 4.39187 4.46500 4.49045 4.61239 4.66888 4.69438 4.78960 4.83743 4.94216 5.05166 5.05765 5.07190 5.16874 5.25115 5.25867 5.29451 5.35763 5.38343 5.47878 5.50450 5.51010 5.58981 5.60311 5.63471 5.64514 5.65983 5.81005 5.90385 6.01501 6.05036 6.09233 6.13370 6.25118 6.36862 6.53396 6.55590 6.72828 6.89451 7.19391 7.43980 7.70665 8.18950 8.42616 9.53550 10.09593 10.44670 11.47001 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.014201 B = 0.001971 C = 0.001800 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1971.195266 B =14199.880810 C =15548.908235 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.100 3.900 3 N -0.604 5.604 4 C 0.108 3.892 5 C 0.143 3.857 6 N -0.730 5.730 7 C -0.238 4.238 8 H 0.070 0.930 9 C -0.014 4.014 10 N -0.933 5.933 11 Si 0.909 3.091 12 H -0.290 1.290 13 H -0.291 1.291 14 H -0.282 1.282 15 C 0.517 3.483 16 O -0.534 6.534 17 C -0.139 4.139 18 C 0.075 3.925 19 O -0.318 6.318 20 C 0.142 3.858 21 C -0.213 4.213 22 C -0.042 4.042 23 C -0.118 4.118 24 C -0.162 4.162 25 C -0.047 4.047 26 C -0.114 4.114 27 C -0.162 4.162 28 H 0.062 0.938 29 H 0.067 0.933 30 H 0.055 0.945 31 H 0.086 0.914 32 H 0.078 0.922 33 H 0.077 0.923 34 H 0.085 0.915 35 H 0.022 0.978 36 H 0.018 0.982 37 H 0.384 0.616 38 H 0.255 0.745 39 H 0.104 0.896 40 H 0.103 0.897 41 H 0.072 0.928 42 H 0.073 0.927 43 H 0.131 0.869 44 H 0.073 0.927 45 H 0.069 0.931 46 H 0.067 0.933 47 H 0.121 0.879 48 H 0.072 0.928 49 H 0.067 0.933 50 H 0.068 0.932 51 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.793 -6.558 28.487 30.829 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.023 4.023 3 N -0.337 5.337 4 C -0.014 4.014 5 C 0.014 3.986 6 N -0.375 5.375 7 C -0.370 4.370 8 H 0.088 0.912 9 C -0.210 4.210 10 N -0.582 5.582 11 Si 0.740 3.260 12 H -0.217 1.217 13 H -0.217 1.217 14 H -0.208 1.208 15 C 0.304 3.696 16 O -0.411 6.411 17 C -0.178 4.178 18 C -0.001 4.001 19 O -0.231 6.231 20 C 0.097 3.903 21 C -0.232 4.232 22 C -0.042 4.042 23 C -0.175 4.175 24 C -0.181 4.181 25 C -0.048 4.048 26 C -0.170 4.170 27 C -0.180 4.180 28 H 0.081 0.919 29 H 0.086 0.914 30 H 0.074 0.926 31 H 0.104 0.896 32 H 0.097 0.903 33 H 0.096 0.904 34 H 0.103 0.897 35 H 0.040 0.960 36 H 0.036 0.964 37 H 0.217 0.783 38 H 0.065 0.935 39 H 0.122 0.878 40 H 0.121 0.879 41 H 0.090 0.910 42 H 0.091 0.909 43 H 0.149 0.851 44 H 0.092 0.908 45 H 0.088 0.912 46 H 0.086 0.914 47 H 0.139 0.861 48 H 0.091 0.909 49 H 0.086 0.914 50 H 0.086 0.914 51 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -9.474 -6.176 28.406 30.575 hybrid contribution 0.738 0.194 -0.912 1.189 sum -8.737 -5.983 27.494 29.463 Atomic orbital electron populations 1.22222 0.95809 1.02328 1.02650 1.21640 0.94431 0.82470 1.03741 1.47907 1.65338 1.14315 1.06167 1.21717 0.98198 0.98414 0.83121 1.20905 0.92708 0.95510 0.89431 1.42208 1.12890 1.60763 1.21636 1.19207 0.89296 1.26092 1.02363 0.91200 1.24754 0.97879 1.00324 0.98053 1.69663 1.31599 1.37355 1.19557 0.86157 0.83642 0.76971 0.79233 1.21703 1.21706 1.20756 1.20190 0.77728 0.86636 0.85054 1.90757 1.45199 1.17842 1.87304 1.21525 1.05052 1.00085 0.91186 1.22461 1.02264 0.94999 0.80354 1.85957 1.82648 1.41778 1.12750 1.18909 0.94722 0.90481 0.86232 1.21238 1.07674 0.94703 0.99600 1.19714 0.96029 0.96044 0.92452 1.20842 1.01483 0.92139 1.02987 1.20799 1.04879 0.95257 0.97117 1.19654 0.96578 0.93801 0.94730 1.20795 1.02278 1.00725 0.93214 1.20237 1.07617 1.01029 0.89141 0.91927 0.91384 0.92573 0.89591 0.90329 0.90414 0.89672 0.95973 0.96440 0.78264 0.93489 0.87755 0.87858 0.91009 0.90872 0.85080 0.90802 0.91226 0.91363 0.86084 0.90920 0.91363 0.91351 0.85357 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.40 10.24 37.16 0.38 -1.02 16 2 C 0.10 0.97 5.93 -4.04 -0.02 0.94 16 3 N -0.60 -8.21 2.47 -173.69 -0.43 -8.64 16 4 C 0.11 1.83 5.52 -4.04 -0.02 1.81 16 5 C 0.14 3.03 6.58 -4.04 -0.03 3.00 16 6 N -0.73 -19.16 5.60 -59.90 -0.34 -19.49 16 7 C -0.24 -6.89 9.99 -15.06 -0.15 -7.04 16 8 H 0.07 1.97 7.83 -52.49 -0.41 1.56 16 9 C -0.01 -0.42 5.50 -17.43 -0.10 -0.51 16 10 N -0.93 -28.67 13.06 55.49 0.72 -27.94 16 11 Si 0.91 22.83 29.55 -169.99 -5.02 17.81 16 12 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 13 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 14 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 15 C 0.52 7.37 7.67 -10.99 -0.08 7.29 16 16 O -0.53 -9.89 15.56 5.56 0.09 -9.80 16 17 C -0.14 -1.42 4.62 -27.88 -0.13 -1.55 16 18 C 0.07 0.84 4.03 37.16 0.15 0.99 16 19 O -0.32 -3.65 10.14 -19.44 -0.20 -3.85 16 20 C 0.14 1.62 6.69 -39.22 -0.26 1.36 16 21 C -0.21 -2.37 8.69 -39.43 -0.34 -2.71 16 22 C -0.04 -0.42 5.88 -104.64 -0.62 -1.03 16 23 C -0.12 -0.91 10.01 36.01 0.36 -0.55 16 24 C -0.16 -1.45 9.35 -39.56 -0.37 -1.82 16 25 C -0.05 -0.42 5.88 -104.65 -0.62 -1.03 16 26 C -0.11 -0.66 10.01 36.01 0.36 -0.30 16 27 C -0.16 -1.62 9.64 -39.43 -0.38 -2.00 16 28 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.06 0.44 7.22 -51.93 -0.38 0.07 16 31 H 0.09 0.84 8.07 -51.93 -0.42 0.43 16 32 H 0.08 0.59 6.44 -51.93 -0.33 0.26 16 33 H 0.08 1.22 8.07 -51.93 -0.42 0.80 16 34 H 0.08 1.62 7.42 -51.93 -0.39 1.23 16 35 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 37 H 0.38 10.44 7.67 -40.82 -0.31 10.13 16 38 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 39 H 0.10 0.91 7.40 -51.93 -0.38 0.52 16 40 H 0.10 0.86 7.19 -51.92 -0.37 0.49 16 41 H 0.07 0.83 7.63 -51.93 -0.40 0.44 16 42 H 0.07 0.89 7.61 -51.93 -0.39 0.49 16 43 H 0.13 1.44 6.30 -52.48 -0.33 1.11 16 44 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 45 H 0.07 0.53 8.09 -51.93 -0.42 0.11 16 46 H 0.07 0.43 8.09 -51.93 -0.42 0.01 16 47 H 0.12 0.84 8.06 -52.49 -0.42 0.42 16 48 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 49 H 0.07 0.33 8.09 -51.93 -0.42 -0.09 16 50 H 0.07 0.35 8.08 -51.93 -0.42 -0.07 16 51 H 0.13 1.11 8.06 -52.48 -0.42 0.68 16 LS Contribution 418.41 15.07 6.31 6.31 Total: -1.00 -34.51 418.41 -9.47 -43.97 By element: Atomic # 1 Polarization: 14.54 SS G_CDS: -8.73 Total: 5.81 kcal Atomic # 6 Polarization: -2.30 SS G_CDS: -1.87 Total: -4.17 kcal Atomic # 7 Polarization: -56.04 SS G_CDS: -0.04 Total: -56.08 kcal Atomic # 8 Polarization: -13.54 SS G_CDS: -0.11 Total: -13.65 kcal Atomic # 14 Polarization: 22.83 SS G_CDS: -5.02 Total: 17.81 kcal Total LS contribution 6.31 Total: 6.31 kcal Total: -34.51 -9.47 -43.97 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001482927077.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.225 kcal (2) G-P(sol) polarization free energy of solvation -34.505 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.731 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.469 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.975 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.200 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds