Wall clock time and date at job start Tue Mar 31 2020 18:51:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46500 * 109.47191 * 2 1 4 4 C 1.46498 * 119.99876 * 269.99975 * 3 2 1 5 5 C 1.52996 * 109.47115 * 270.00358 * 4 3 2 6 6 N 1.46507 * 109.47111 * 180.02562 * 5 4 3 7 7 C 1.36942 * 119.99519 * 179.97438 * 6 5 4 8 8 H 1.07996 * 120.00383 * 0.02562 * 7 6 5 9 9 C 1.38813 * 119.99344 * 179.97438 * 7 6 5 10 10 N 1.31621 * 120.00100 * 0.02562 * 9 7 6 11 11 Si 1.86801 * 119.99800 * 180.02562 * 9 7 6 12 12 H 1.48496 * 109.46917 * 90.00115 * 11 9 7 13 13 H 1.48500 * 109.47185 * 210.00006 * 11 9 7 14 14 H 1.48495 * 109.47069 * 330.00231 * 11 9 7 15 15 C 1.34773 * 119.99942 * 89.99901 * 3 2 1 16 16 O 1.21283 * 119.99693 * 179.97438 * 15 3 2 17 17 C 1.50703 * 120.00193 * 0.02562 * 15 3 2 18 18 C 1.52998 * 109.47225 * 179.97438 * 17 15 3 19 19 O 1.42901 * 109.47046 * 179.97438 * 18 17 15 20 20 C 1.35905 * 116.99604 * 179.97438 * 19 18 17 21 21 C 1.38722 * 120.05728 * 359.72917 * 20 19 18 22 22 C 1.38150 * 119.94161 * 179.74227 * 21 20 19 23 23 C 1.50704 * 119.97223 * 180.27212 * 22 21 20 24 24 C 1.38261 * 120.05672 * 0.50783 * 22 21 20 25 25 C 1.38268 * 120.10988 * 359.76619 * 24 22 21 26 26 C 1.50704 * 119.97155 * 180.02562 * 25 24 22 27 27 C 1.38139 * 120.05525 * 359.97438 * 25 24 22 28 28 H 1.09001 * 109.47307 * 59.99674 * 1 2 3 29 29 H 1.09000 * 109.47694 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.46992 * 299.99900 * 1 2 3 31 31 H 1.08999 * 109.46868 * 239.99565 * 2 1 3 32 32 H 1.08996 * 109.46866 * 120.00170 * 2 1 3 33 33 H 1.09001 * 109.47170 * 29.99884 * 4 3 2 34 34 H 1.09002 * 109.47096 * 149.99862 * 4 3 2 35 35 H 1.09006 * 109.47153 * 299.99960 * 5 4 3 36 36 H 1.09002 * 109.47543 * 59.99778 * 5 4 3 37 37 H 0.96998 * 119.99931 * 359.97438 * 6 5 4 38 38 H 0.97002 * 119.99688 * 179.97438 * 10 9 7 39 39 H 1.08998 * 109.47163 * 59.99285 * 17 15 3 40 40 H 1.09007 * 109.46696 * 299.99522 * 17 15 3 41 41 H 1.08996 * 109.47090 * 59.99528 * 18 17 15 42 42 H 1.08999 * 109.47084 * 299.99701 * 18 17 15 43 43 H 1.08006 * 120.03385 * 359.97438 * 21 20 19 44 44 H 1.08993 * 109.47290 * 270.23243 * 23 22 21 45 45 H 1.09000 * 109.46914 * 30.23522 * 23 22 21 46 46 H 1.09002 * 109.47052 * 150.23293 * 23 22 21 47 47 H 1.08001 * 119.94795 * 179.74501 * 24 22 21 48 48 H 1.08998 * 109.46840 * 269.97937 * 26 25 24 49 49 H 1.09003 * 109.47240 * 29.97753 * 26 25 24 50 50 H 1.08994 * 109.46878 * 149.97626 * 26 25 24 51 51 H 1.08005 * 120.02930 * 179.97438 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2625 2.0718 -1.2687 5 6 3.7075 1.8313 -1.7104 6 7 3.9518 2.5224 -2.9789 7 6 5.1843 2.4502 -3.5715 8 1 5.9759 1.8836 -3.1041 9 6 5.4156 3.1046 -4.7737 10 7 4.4506 3.7948 -5.3436 11 14 7.0965 3.0057 -5.5825 12 1 7.1377 1.8363 -6.4969 13 1 7.3475 4.2481 -6.3562 14 1 8.1405 2.8539 -4.5375 15 6 2.2430 2.0165 1.1672 16 8 2.6477 3.1598 1.1671 17 6 1.9923 1.3060 2.4723 18 6 2.3242 2.2432 3.6352 19 8 2.0860 1.5695 4.8728 20 6 2.3336 2.2671 6.0125 21 6 2.8017 3.5711 5.9412 22 6 3.0476 4.2798 7.1013 23 6 3.5503 5.6985 7.0246 24 6 2.8376 3.6871 8.3326 25 6 2.3765 2.3856 8.4063 26 6 2.1480 1.7428 9.7501 27 6 2.1240 1.6745 7.2493 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 1.5817 1.6876 -2.0284 34 1 2.0956 3.1410 -1.1384 35 1 4.3884 2.2154 -0.9508 36 1 3.8745 0.7620 -1.8407 37 1 3.2407 3.0310 -3.3989 38 1 4.6124 4.2524 -6.1835 39 1 2.6228 0.4187 2.5298 40 1 0.9444 1.0115 2.5302 41 1 1.6941 3.1307 3.5778 42 1 3.3722 2.5373 3.5771 43 1 2.9702 4.0331 4.9796 44 1 4.6401 5.6973 7.0062 45 1 3.1720 6.1694 6.1173 46 1 3.2022 6.2548 7.8949 47 1 3.0343 4.2414 9.2384 48 1 3.0615 1.2444 10.0744 49 1 1.8738 2.5075 10.4768 50 1 1.3436 1.0117 9.6710 51 1 1.7642 0.6578 7.3073 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001482927077.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:51:37 Heat of formation + Delta-G solvation = -72.411879 kcal Electronic energy + Delta-G solvation = -27888.587455 eV Core-core repulsion = 23980.252711 eV Total energy + Delta-G solvation = -3908.334743 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -41.46242 -40.94945 -38.86751 -37.60369 -36.40617 -34.49148 -33.95767 -33.13202 -31.62118 -31.36133 -29.30719 -28.11524 -27.86793 -26.18064 -24.99172 -24.18116 -23.10831 -22.69745 -21.46096 -20.09022 -19.24494 -18.78116 -17.87803 -17.64496 -17.26724 -16.98694 -16.90687 -16.55532 -16.19572 -15.35947 -15.32390 -15.16367 -14.92134 -14.81852 -14.70831 -14.50224 -14.40797 -14.04776 -13.97858 -13.90814 -13.47459 -13.36259 -13.12307 -12.93531 -12.91317 -12.80488 -12.68523 -12.54415 -12.46621 -12.37355 -12.26800 -12.15545 -11.95193 -11.89136 -11.75858 -11.56776 -11.01632 -10.96829 -9.78736 -9.60489 -9.15406 -9.09051 -8.00086 -5.31019 0.32034 0.45004 1.44295 1.47320 1.50441 1.55777 1.62892 2.30107 2.54585 2.72542 3.33007 3.45820 3.70194 3.80089 3.83701 3.88845 3.99359 4.07816 4.09128 4.16313 4.19525 4.27179 4.35825 4.39776 4.42450 4.49110 4.52921 4.56021 4.60737 4.67045 4.69036 4.75048 4.81774 4.87294 4.87649 4.97045 4.98466 5.05294 5.08262 5.11921 5.28351 5.35697 5.38952 5.41279 5.52583 5.55562 5.65825 5.85030 6.21262 6.33064 6.37924 7.06395 7.27468 7.99058 8.24413 9.23135 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.014201 B = 0.001971 C = 0.001800 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1971.195266 B =14199.880810 C =15548.908235 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.093 3.907 3 N -0.601 5.601 4 C 0.123 3.877 5 C 0.149 3.851 6 N -0.743 5.743 7 C -0.252 4.252 8 H 0.073 0.927 9 C -0.073 4.073 10 N -0.967 5.967 11 Si 0.979 3.021 12 H -0.281 1.281 13 H -0.293 1.293 14 H -0.272 1.272 15 C 0.511 3.489 16 O -0.586 6.586 17 C -0.124 4.124 18 C 0.080 3.920 19 O -0.319 6.319 20 C 0.120 3.880 21 C -0.234 4.234 22 C -0.053 4.053 23 C -0.117 4.117 24 C -0.166 4.166 25 C -0.048 4.048 26 C -0.112 4.112 27 C -0.172 4.172 28 H 0.047 0.953 29 H 0.092 0.908 30 H 0.060 0.940 31 H 0.086 0.914 32 H 0.108 0.892 33 H 0.094 0.906 34 H 0.059 0.941 35 H -0.001 1.001 36 H 0.031 0.969 37 H 0.375 0.625 38 H 0.253 0.747 39 H 0.128 0.872 40 H 0.131 0.869 41 H 0.061 0.939 42 H 0.056 0.944 43 H 0.120 0.880 44 H 0.078 0.922 45 H 0.063 0.937 46 H 0.086 0.914 47 H 0.144 0.856 48 H 0.082 0.918 49 H 0.081 0.919 50 H 0.076 0.924 51 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.004 -8.556 30.505 33.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.028 4.028 3 N -0.333 5.333 4 C -0.001 4.001 5 C 0.021 3.979 6 N -0.386 5.386 7 C -0.384 4.384 8 H 0.091 0.909 9 C -0.266 4.266 10 N -0.617 5.617 11 Si 0.807 3.193 12 H -0.207 1.207 13 H -0.219 1.219 14 H -0.197 1.197 15 C 0.301 3.699 16 O -0.467 6.467 17 C -0.163 4.163 18 C 0.004 3.996 19 O -0.233 6.233 20 C 0.075 3.925 21 C -0.253 4.253 22 C -0.054 4.054 23 C -0.174 4.174 24 C -0.184 4.184 25 C -0.048 4.048 26 C -0.168 4.168 27 C -0.190 4.190 28 H 0.066 0.934 29 H 0.111 0.889 30 H 0.079 0.921 31 H 0.104 0.896 32 H 0.126 0.874 33 H 0.112 0.888 34 H 0.078 0.922 35 H 0.017 0.983 36 H 0.049 0.951 37 H 0.207 0.793 38 H 0.062 0.938 39 H 0.146 0.854 40 H 0.149 0.851 41 H 0.079 0.921 42 H 0.075 0.925 43 H 0.138 0.862 44 H 0.097 0.903 45 H 0.082 0.918 46 H 0.104 0.896 47 H 0.162 0.838 48 H 0.101 0.899 49 H 0.100 0.900 50 H 0.095 0.905 51 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -9.703 -8.236 30.463 33.015 hybrid contribution 0.786 0.800 -1.437 1.823 sum -8.917 -7.437 29.026 31.262 Atomic orbital electron populations 1.22187 0.94360 1.03773 1.02189 1.21988 0.95597 0.79988 1.05241 1.47994 1.64890 1.15781 1.04651 1.21313 0.95841 0.97628 0.85292 1.20956 0.94873 0.95244 0.86800 1.42393 1.12042 1.61147 1.23059 1.19591 0.90333 1.25792 1.02658 0.90898 1.25638 1.01790 1.00335 0.98827 1.69820 1.33645 1.38367 1.19870 0.85074 0.79187 0.76862 0.78208 1.20734 1.21912 1.19739 1.20920 0.76493 0.86145 0.86370 1.90738 1.47545 1.20323 1.88073 1.21466 1.07203 0.99710 0.87957 1.22317 1.01093 0.95135 0.81042 1.85921 1.82881 1.41750 1.12701 1.19191 0.95802 0.90853 0.86674 1.21304 1.08997 0.95185 0.99812 1.20022 0.95890 0.96945 0.92506 1.20877 1.01739 0.91196 1.03550 1.21136 1.04162 0.95605 0.97507 1.20067 0.95258 0.93761 0.95756 1.20862 1.03107 1.01236 0.91613 1.20507 1.07765 1.01776 0.88955 0.93379 0.88928 0.92102 0.89559 0.87415 0.88787 0.92228 0.98258 0.95102 0.79256 0.93776 0.85365 0.85059 0.92096 0.92530 0.86209 0.90313 0.91833 0.89554 0.83806 0.89912 0.90007 0.90476 0.84144 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.27 10.24 71.98 0.74 -1.53 16 2 C 0.09 1.56 5.93 86.38 0.51 2.07 16 3 N -0.60 -15.93 2.47 -821.82 -2.03 -17.96 16 4 C 0.12 4.25 5.52 86.38 0.48 4.73 16 5 C 0.15 6.41 6.58 86.38 0.57 6.98 16 6 N -0.74 -39.86 5.60 -343.43 -1.92 -41.79 16 7 C -0.25 -14.72 9.99 84.03 0.84 -13.88 16 8 H 0.07 4.11 7.83 -2.91 -0.02 4.09 16 9 C -0.07 -4.34 5.50 84.86 0.47 -3.87 16 10 N -0.97 -60.35 13.06 21.65 0.28 -60.07 16 11 Si 0.98 47.15 29.55 68.60 2.03 49.17 16 12 H -0.28 -13.05 7.11 99.48 0.71 -12.34 16 13 H -0.29 -14.10 7.11 99.48 0.71 -13.39 16 14 H -0.27 -12.56 7.11 99.48 0.71 -11.86 16 15 C 0.51 14.58 7.67 87.66 0.67 15.26 16 16 O -0.59 -22.79 15.56 -3.04 -0.05 -22.84 16 17 C -0.12 -2.36 4.62 29.85 0.14 -2.22 16 18 C 0.08 1.84 4.03 71.98 0.29 2.13 16 19 O -0.32 -7.25 10.14 -92.48 -0.94 -8.19 16 20 C 0.12 2.76 6.69 22.50 0.15 2.91 16 21 C -0.23 -5.44 8.69 22.36 0.19 -5.25 16 22 C -0.05 -1.05 5.88 -19.88 -0.12 -1.16 16 23 C -0.12 -1.77 10.01 71.24 0.71 -1.05 16 24 C -0.17 -2.73 9.35 22.28 0.21 -2.52 16 25 C -0.05 -0.77 5.88 -19.88 -0.12 -0.89 16 26 C -0.11 -1.01 10.01 71.24 0.71 -0.29 16 27 C -0.17 -3.28 9.64 22.36 0.22 -3.06 16 28 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 29 H 0.09 0.84 8.14 -2.39 -0.02 0.82 16 30 H 0.06 0.78 7.22 -2.39 -0.02 0.76 16 31 H 0.09 1.48 8.07 -2.39 -0.02 1.46 16 32 H 0.11 1.21 6.44 -2.39 -0.02 1.20 16 33 H 0.09 2.93 8.07 -2.39 -0.02 2.91 16 34 H 0.06 2.38 7.42 -2.39 -0.02 2.36 16 35 H 0.00 -0.03 8.14 -2.38 -0.02 -0.05 16 36 H 0.03 1.26 8.14 -2.39 -0.02 1.24 16 37 H 0.38 21.08 7.67 -92.71 -0.71 20.37 16 38 H 0.25 15.22 8.31 -92.71 -0.77 14.45 16 39 H 0.13 1.88 7.40 -2.39 -0.02 1.86 16 40 H 0.13 1.81 7.19 -2.38 -0.02 1.79 16 41 H 0.06 1.51 7.63 -2.39 -0.02 1.49 16 42 H 0.06 1.47 7.61 -2.39 -0.02 1.45 16 43 H 0.12 2.93 6.30 -2.91 -0.02 2.91 16 44 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 45 H 0.06 1.02 8.09 -2.39 -0.02 1.00 16 46 H 0.09 0.96 8.09 -2.39 -0.02 0.94 16 47 H 0.14 1.63 8.06 -2.91 -0.02 1.61 16 48 H 0.08 0.62 8.14 -2.39 -0.02 0.60 16 49 H 0.08 0.53 8.09 -2.39 -0.02 0.51 16 50 H 0.08 0.58 8.08 -2.39 -0.02 0.56 16 51 H 0.14 2.22 8.06 -2.91 -0.02 2.20 16 Total: -1.00 -76.75 418.41 4.23 -72.52 By element: Atomic # 1 Polarization: 30.62 SS G_CDS: 0.20 Total: 30.82 kcal Atomic # 6 Polarization: -8.33 SS G_CDS: 6.66 Total: -1.66 kcal Atomic # 7 Polarization: -116.14 SS G_CDS: -3.67 Total: -119.82 kcal Atomic # 8 Polarization: -30.04 SS G_CDS: -0.98 Total: -31.02 kcal Atomic # 14 Polarization: 47.15 SS G_CDS: 2.03 Total: 49.17 kcal Total: -76.75 4.23 -72.52 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001482927077.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.104 kcal (2) G-P(sol) polarization free energy of solvation -76.746 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.642 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.230 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.516 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.412 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds