Wall clock time and date at job start Tue Mar 31 2020 18:52:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46496 * 109.47275 * 2 1 4 4 C 1.46506 * 119.99967 * 275.91462 * 3 2 1 5 5 C 1.52997 * 109.46730 * 269.99626 * 4 3 2 6 6 N 1.46496 * 109.47282 * 180.02562 * 5 4 3 7 7 C 1.36932 * 120.00616 * 179.97438 * 6 5 4 8 8 H 1.08009 * 119.99686 * 0.02562 * 7 6 5 9 9 C 1.38808 * 120.00488 * 179.97438 * 7 6 5 10 10 N 1.31622 * 120.00045 * 0.02562 * 9 7 6 11 11 Si 1.86802 * 120.00134 * 180.02562 * 9 7 6 12 12 H 1.48503 * 109.47337 * 90.00423 * 11 9 7 13 13 H 1.48506 * 109.47042 * 210.00345 * 11 9 7 14 14 H 1.48494 * 109.47195 * 330.00185 * 11 9 7 15 15 C 1.34771 * 120.00006 * 95.91024 * 3 2 1 16 16 O 1.21288 * 120.00039 * 185.94772 * 15 3 2 17 17 C 1.50700 * 120.00247 * 5.94343 * 15 3 2 18 18 H 1.09005 * 109.46866 * 50.65173 * 17 15 3 19 19 C 1.53005 * 109.47209 * 290.65568 * 17 15 3 20 20 O 1.42893 * 109.47413 * 170.64916 * 17 15 3 21 21 C 1.42902 * 114.00480 * 210.00115 * 20 17 15 22 22 C 1.50700 * 109.47347 * 180.02562 * 21 20 17 23 23 C 1.38255 * 119.99979 * 359.97438 * 22 21 20 24 24 C 1.38208 * 119.99887 * 179.72346 * 23 22 21 25 25 C 1.38253 * 120.00258 * 0.27788 * 24 23 22 26 26 C 1.38222 * 119.99997 * 359.97438 * 25 24 23 27 27 C 1.38213 * 119.99951 * 180.19065 * 22 21 20 28 28 C 1.50706 * 119.99928 * 0.04136 * 27 22 21 29 29 H 1.08997 * 109.47033 * 187.73187 * 1 2 3 30 30 H 1.09000 * 109.47354 * 307.72658 * 1 2 3 31 31 H 1.09002 * 109.47134 * 67.73107 * 1 2 3 32 32 H 1.09008 * 109.46906 * 239.99840 * 2 1 3 33 33 H 1.08998 * 109.46941 * 120.00424 * 2 1 3 34 34 H 1.08991 * 109.47115 * 29.99770 * 4 3 2 35 35 H 1.08997 * 109.47040 * 150.00023 * 4 3 2 36 36 H 1.09005 * 109.47620 * 300.00110 * 5 4 3 37 37 H 1.08998 * 109.47551 * 60.00304 * 5 4 3 38 38 H 0.97006 * 119.99765 * 359.97438 * 6 5 4 39 39 H 0.97001 * 119.99908 * 179.97438 * 10 9 7 40 40 H 1.08995 * 109.46952 * 185.91764 * 19 17 15 41 41 H 1.08996 * 109.46719 * 305.91302 * 19 17 15 42 42 H 1.08993 * 109.47056 * 65.91702 * 19 17 15 43 43 H 1.09002 * 109.47101 * 59.99986 * 21 20 17 44 44 H 1.09000 * 109.46910 * 300.00397 * 21 20 17 45 45 H 1.07996 * 120.00058 * 359.97438 * 23 22 21 46 46 H 1.08004 * 120.00227 * 180.25728 * 24 23 22 47 47 H 1.08001 * 120.00527 * 179.97438 * 25 24 23 48 48 H 1.07996 * 120.00210 * 179.97438 * 26 25 24 49 49 H 1.09000 * 109.47224 * 270.16644 * 28 27 22 50 50 H 1.08994 * 109.47071 * 30.17308 * 28 27 22 51 51 H 1.09000 * 109.46714 * 150.16618 * 28 27 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1393 2.1154 -1.2620 5 6 3.5341 1.8927 -1.8499 6 7 3.6554 2.6273 -3.1115 7 6 4.8242 2.5778 -3.8231 8 1 5.6567 1.9967 -3.4544 9 6 4.9389 3.2734 -5.0188 10 7 3.9243 3.9811 -5.4684 11 14 6.5332 3.2052 -5.9899 12 1 6.4837 2.0680 -6.9437 13 1 6.7099 4.4740 -6.7411 14 1 7.6735 3.0194 -5.0570 15 6 2.3563 1.9764 1.1609 16 8 2.6572 3.1513 1.1750 17 6 2.3602 1.1823 2.4417 18 1 2.9346 0.2668 2.2998 19 6 0.9224 0.8278 2.8265 20 8 2.9540 1.9604 3.4828 21 6 3.6188 1.1842 4.4817 22 6 4.2039 2.1019 5.5241 23 6 4.0463 3.4704 5.4072 24 6 4.5779 4.3117 6.3662 25 6 5.2723 3.7851 7.4395 26 6 5.4344 2.4171 7.5536 27 6 4.9019 1.5756 6.5947 28 6 5.0786 0.0841 6.7190 29 1 -0.3633 -1.0183 0.1383 30 1 -0.3634 0.6288 0.8128 31 1 -0.3633 0.3894 -0.9510 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8899 34 1 1.3873 1.7565 -1.9646 35 1 1.9876 3.1792 -1.0794 36 1 4.2862 2.2516 -1.1472 37 1 3.6859 0.8289 -2.0325 38 1 2.9076 3.1488 -3.4428 39 1 4.0046 4.4675 -6.3038 40 1 0.9162 0.3459 3.8041 41 1 0.3223 1.7369 2.8658 42 1 0.5046 0.1483 2.0838 43 1 4.4169 0.6036 4.0191 44 1 2.9042 0.5090 4.9524 45 1 3.5042 3.8819 4.5686 46 1 4.4513 5.3806 6.2771 47 1 5.6882 4.4424 8.1887 48 1 5.9772 2.0058 8.3918 49 1 4.2474 -0.3342 7.2865 50 1 5.1018 -0.3631 5.7253 51 1 6.0147 -0.1290 7.2352 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001482941812.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:52:14 Heat of formation + Delta-G solvation = -38.987139 kcal Electronic energy + Delta-G solvation = -28777.147940 eV Core-core repulsion = 24870.262602 eV Total energy + Delta-G solvation = -3906.885338 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.37287 -39.69256 -37.74359 -36.17024 -34.71440 -33.36459 -32.59361 -31.70251 -30.66565 -30.35406 -27.71644 -27.45231 -26.22585 -24.56698 -23.59254 -23.12932 -22.05126 -21.36626 -21.04150 -19.02086 -17.67611 -17.18409 -16.97020 -16.49287 -16.05407 -15.93214 -15.18222 -15.07855 -14.69494 -14.57536 -14.45342 -14.23698 -13.88058 -13.57856 -13.55900 -13.27939 -13.22401 -12.93823 -12.78792 -12.69604 -12.63861 -12.57385 -12.39155 -12.11006 -11.68442 -11.61639 -11.25303 -11.19830 -11.13927 -10.97225 -10.95530 -10.86670 -10.65396 -10.19827 -10.08792 -9.74028 -9.41104 -8.92009 -8.85193 -8.75156 -8.52046 -6.91070 -5.73881 -3.03096 1.13154 1.25403 2.67406 2.73881 3.45850 3.50677 3.53010 3.57289 3.58422 4.32881 4.52272 4.59763 4.62354 4.64144 4.74805 4.75415 4.86019 4.92043 5.00432 5.02416 5.04450 5.12296 5.19434 5.26663 5.30390 5.37533 5.43270 5.48365 5.51761 5.54893 5.62289 5.63203 5.68054 5.79821 5.84001 5.84930 5.95742 6.04907 6.10399 6.17066 6.27326 6.37576 6.42626 6.56380 6.74041 6.84570 6.89437 6.96259 7.50066 7.72310 8.30924 8.44677 9.55489 10.11684 10.46806 11.49045 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.011323 B = 0.002438 C = 0.002153 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2472.356278 B =11483.234651 C =13001.933927 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.098 3.902 3 N -0.606 5.606 4 C 0.109 3.891 5 C 0.143 3.857 6 N -0.730 5.730 7 C -0.237 4.237 8 H 0.070 0.930 9 C -0.014 4.014 10 N -0.933 5.933 11 Si 0.909 3.091 12 H -0.290 1.290 13 H -0.291 1.291 14 H -0.282 1.282 15 C 0.513 3.487 16 O -0.511 6.511 17 C 0.074 3.926 18 H 0.085 0.915 19 C -0.187 4.187 20 O -0.352 6.352 21 C 0.102 3.898 22 C -0.090 4.090 23 C -0.088 4.088 24 C -0.127 4.127 25 C -0.118 4.118 26 C -0.124 4.124 27 C -0.084 4.084 28 C -0.118 4.118 29 H 0.067 0.933 30 H 0.066 0.934 31 H 0.064 0.936 32 H 0.084 0.916 33 H 0.077 0.923 34 H 0.078 0.922 35 H 0.086 0.914 36 H 0.021 0.979 37 H 0.018 0.982 38 H 0.384 0.616 39 H 0.255 0.745 40 H 0.067 0.933 41 H 0.070 0.930 42 H 0.089 0.911 43 H 0.064 0.936 44 H 0.064 0.936 45 H 0.138 0.862 46 H 0.122 0.878 47 H 0.120 0.880 48 H 0.121 0.879 49 H 0.071 0.929 50 H 0.066 0.934 51 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.767 -11.666 26.904 29.886 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C -0.025 4.025 3 N -0.341 5.341 4 C -0.013 4.013 5 C 0.014 3.986 6 N -0.375 5.375 7 C -0.369 4.369 8 H 0.088 0.912 9 C -0.210 4.210 10 N -0.582 5.582 11 Si 0.740 3.260 12 H -0.217 1.217 13 H -0.217 1.217 14 H -0.207 1.207 15 C 0.299 3.701 16 O -0.384 6.384 17 C 0.012 3.988 18 H 0.102 0.898 19 C -0.245 4.245 20 O -0.270 6.270 21 C 0.026 3.974 22 C -0.090 4.090 23 C -0.105 4.105 24 C -0.145 4.145 25 C -0.136 4.136 26 C -0.142 4.142 27 C -0.084 4.084 28 C -0.175 4.175 29 H 0.086 0.914 30 H 0.085 0.915 31 H 0.083 0.917 32 H 0.103 0.897 33 H 0.095 0.905 34 H 0.096 0.904 35 H 0.104 0.896 36 H 0.039 0.961 37 H 0.036 0.964 38 H 0.218 0.782 39 H 0.065 0.935 40 H 0.086 0.914 41 H 0.089 0.911 42 H 0.108 0.892 43 H 0.082 0.918 44 H 0.082 0.918 45 H 0.155 0.845 46 H 0.140 0.860 47 H 0.138 0.862 48 H 0.139 0.861 49 H 0.090 0.910 50 H 0.085 0.915 51 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -5.433 -10.846 26.874 29.485 hybrid contribution 0.679 -0.136 -0.733 1.008 sum -4.755 -10.982 26.141 28.750 Atomic orbital electron populations 1.22444 0.95821 1.02372 1.03301 1.21687 0.94538 0.82803 1.03474 1.47847 1.65457 1.14223 1.06606 1.21692 0.98780 0.97869 0.82984 1.20906 0.93523 0.95210 0.88929 1.42204 1.15783 1.58265 1.21217 1.19200 0.91736 1.24673 1.01261 0.91229 1.24751 0.97838 1.00122 0.98307 1.69664 1.30309 1.35639 1.22588 0.86161 0.82982 0.76932 0.79958 1.21720 1.21707 1.20743 1.20264 0.77574 0.87877 0.84358 1.90750 1.46115 1.15693 1.85874 1.21885 0.95569 0.93978 0.87326 0.89775 1.22669 0.95310 1.03387 1.03093 1.88016 1.72144 1.32300 1.34543 1.21310 0.95337 0.92547 0.88219 1.19474 0.99699 0.94502 0.95300 1.21153 0.98014 0.92649 0.98729 1.21216 0.98519 1.00016 0.94712 1.21157 0.99073 0.95184 0.98230 1.20923 1.01040 0.93415 0.98835 1.19603 0.98231 0.96049 0.94546 1.20833 1.02405 0.91550 1.02665 0.91378 0.91479 0.91705 0.89727 0.90456 0.90393 0.89573 0.96083 0.96447 0.78242 0.93488 0.91404 0.91104 0.89211 0.91765 0.91848 0.84464 0.85964 0.86193 0.86105 0.91046 0.91489 0.91345 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.44 9.11 37.16 0.34 -1.10 16 2 C 0.10 0.94 5.59 -4.04 -0.02 0.92 16 3 N -0.61 -8.53 2.47 -173.69 -0.43 -8.96 16 4 C 0.11 1.90 5.59 -4.04 -0.02 1.88 16 5 C 0.14 3.07 6.58 -4.05 -0.03 3.04 16 6 N -0.73 -19.34 5.60 -59.91 -0.34 -19.67 16 7 C -0.24 -6.90 9.99 -15.06 -0.15 -7.05 16 8 H 0.07 1.97 7.83 -52.48 -0.41 1.56 16 9 C -0.01 -0.42 5.50 -17.43 -0.10 -0.52 16 10 N -0.93 -28.87 13.06 55.49 0.72 -28.15 16 11 Si 0.91 22.96 29.55 -169.99 -5.02 17.94 16 12 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 13 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 14 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 15 C 0.51 8.02 7.06 -10.99 -0.08 7.95 16 16 O -0.51 -10.56 16.08 -14.18 -0.23 -10.79 16 17 C 0.07 0.84 2.30 -27.88 -0.06 0.77 16 18 H 0.08 0.75 6.80 -51.93 -0.35 0.40 16 19 C -0.19 -1.58 8.50 37.16 0.32 -1.26 16 20 O -0.35 -4.61 8.02 -54.97 -0.44 -5.05 16 21 C 0.10 1.02 4.86 36.01 0.18 1.20 16 22 C -0.09 -1.00 5.88 -104.62 -0.62 -1.61 16 23 C -0.09 -1.08 9.38 -39.59 -0.37 -1.45 16 24 C -0.13 -1.35 10.05 -39.59 -0.40 -1.75 16 25 C -0.12 -1.10 10.05 -39.58 -0.40 -1.50 16 26 C -0.12 -1.11 9.70 -39.58 -0.38 -1.50 16 27 C -0.08 -0.79 5.88 -104.62 -0.62 -1.41 16 28 C -0.12 -0.77 9.60 36.01 0.35 -0.42 16 29 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.07 0.54 5.93 -51.93 -0.31 0.23 16 31 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 32 H 0.08 0.82 8.12 -51.92 -0.42 0.39 16 33 H 0.08 0.55 5.34 -51.93 -0.28 0.28 16 34 H 0.08 1.24 8.07 -51.93 -0.42 0.82 16 35 H 0.09 1.70 7.35 -51.93 -0.38 1.32 16 36 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 38 H 0.38 10.55 7.67 -40.82 -0.31 10.24 16 39 H 0.26 7.60 8.31 -40.82 -0.34 7.27 16 40 H 0.07 0.46 7.77 -51.93 -0.40 0.05 16 41 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 42 H 0.09 0.60 3.46 -51.93 -0.18 0.42 16 43 H 0.06 0.58 7.42 -51.93 -0.39 0.20 16 44 H 0.06 0.49 7.77 -51.93 -0.40 0.09 16 45 H 0.14 1.90 7.01 -52.49 -0.37 1.53 16 46 H 0.12 1.11 8.06 -52.48 -0.42 0.69 16 47 H 0.12 0.84 8.06 -52.49 -0.42 0.42 16 48 H 0.12 0.81 8.06 -52.49 -0.42 0.38 16 49 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 50 H 0.07 0.40 6.64 -51.93 -0.34 0.06 16 51 H 0.07 0.38 8.09 -51.93 -0.42 -0.04 16 LS Contribution 408.33 15.07 6.15 6.15 Total: -1.00 -36.04 408.33 -9.97 -46.01 By element: Atomic # 1 Polarization: 14.68 SS G_CDS: -8.33 Total: 6.35 kcal Atomic # 6 Polarization: -1.77 SS G_CDS: -2.07 Total: -3.83 kcal Atomic # 7 Polarization: -56.74 SS G_CDS: -0.04 Total: -56.78 kcal Atomic # 8 Polarization: -15.17 SS G_CDS: -0.67 Total: -15.84 kcal Atomic # 14 Polarization: 22.96 SS G_CDS: -5.02 Total: 17.94 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -36.04 -9.97 -46.01 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001482941812.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.025 kcal (2) G-P(sol) polarization free energy of solvation -36.038 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.012 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.975 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.012 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.987 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds