Wall clock time and date at job start Tue Mar 31 2020 18:52:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46496 * 109.47275 * 2 1 4 4 C 1.46506 * 119.99967 * 275.91462 * 3 2 1 5 5 C 1.52997 * 109.46730 * 269.99626 * 4 3 2 6 6 N 1.46496 * 109.47282 * 180.02562 * 5 4 3 7 7 C 1.36932 * 120.00616 * 179.97438 * 6 5 4 8 8 H 1.08009 * 119.99686 * 0.02562 * 7 6 5 9 9 C 1.38808 * 120.00488 * 179.97438 * 7 6 5 10 10 N 1.31622 * 120.00045 * 0.02562 * 9 7 6 11 11 Si 1.86802 * 120.00134 * 180.02562 * 9 7 6 12 12 H 1.48503 * 109.47337 * 90.00423 * 11 9 7 13 13 H 1.48506 * 109.47042 * 210.00345 * 11 9 7 14 14 H 1.48494 * 109.47195 * 330.00185 * 11 9 7 15 15 C 1.34771 * 120.00006 * 95.91024 * 3 2 1 16 16 O 1.21288 * 120.00039 * 185.94772 * 15 3 2 17 17 C 1.50700 * 120.00247 * 5.94343 * 15 3 2 18 18 H 1.09005 * 109.46866 * 50.65173 * 17 15 3 19 19 C 1.53005 * 109.47209 * 290.65568 * 17 15 3 20 20 O 1.42893 * 109.47413 * 170.64916 * 17 15 3 21 21 C 1.42902 * 114.00480 * 210.00115 * 20 17 15 22 22 C 1.50700 * 109.47347 * 180.02562 * 21 20 17 23 23 C 1.38255 * 119.99979 * 359.97438 * 22 21 20 24 24 C 1.38208 * 119.99887 * 179.72346 * 23 22 21 25 25 C 1.38253 * 120.00258 * 0.27788 * 24 23 22 26 26 C 1.38222 * 119.99997 * 359.97438 * 25 24 23 27 27 C 1.38213 * 119.99951 * 180.19065 * 22 21 20 28 28 C 1.50706 * 119.99928 * 0.04136 * 27 22 21 29 29 H 1.08997 * 109.47033 * 187.73187 * 1 2 3 30 30 H 1.09000 * 109.47354 * 307.72658 * 1 2 3 31 31 H 1.09002 * 109.47134 * 67.73107 * 1 2 3 32 32 H 1.09008 * 109.46906 * 239.99840 * 2 1 3 33 33 H 1.08998 * 109.46941 * 120.00424 * 2 1 3 34 34 H 1.08991 * 109.47115 * 29.99770 * 4 3 2 35 35 H 1.08997 * 109.47040 * 150.00023 * 4 3 2 36 36 H 1.09005 * 109.47620 * 300.00110 * 5 4 3 37 37 H 1.08998 * 109.47551 * 60.00304 * 5 4 3 38 38 H 0.97006 * 119.99765 * 359.97438 * 6 5 4 39 39 H 0.97001 * 119.99908 * 179.97438 * 10 9 7 40 40 H 1.08995 * 109.46952 * 185.91764 * 19 17 15 41 41 H 1.08996 * 109.46719 * 305.91302 * 19 17 15 42 42 H 1.08993 * 109.47056 * 65.91702 * 19 17 15 43 43 H 1.09002 * 109.47101 * 59.99986 * 21 20 17 44 44 H 1.09000 * 109.46910 * 300.00397 * 21 20 17 45 45 H 1.07996 * 120.00058 * 359.97438 * 23 22 21 46 46 H 1.08004 * 120.00227 * 180.25728 * 24 23 22 47 47 H 1.08001 * 120.00527 * 179.97438 * 25 24 23 48 48 H 1.07996 * 120.00210 * 179.97438 * 26 25 24 49 49 H 1.09000 * 109.47224 * 270.16644 * 28 27 22 50 50 H 1.08994 * 109.47071 * 30.17308 * 28 27 22 51 51 H 1.09000 * 109.46714 * 150.16618 * 28 27 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1393 2.1154 -1.2620 5 6 3.5341 1.8927 -1.8499 6 7 3.6554 2.6273 -3.1115 7 6 4.8242 2.5778 -3.8231 8 1 5.6567 1.9967 -3.4544 9 6 4.9389 3.2734 -5.0188 10 7 3.9243 3.9811 -5.4684 11 14 6.5332 3.2052 -5.9899 12 1 6.4837 2.0680 -6.9437 13 1 6.7099 4.4740 -6.7411 14 1 7.6735 3.0194 -5.0570 15 6 2.3563 1.9764 1.1609 16 8 2.6572 3.1513 1.1750 17 6 2.3602 1.1823 2.4417 18 1 2.9346 0.2668 2.2998 19 6 0.9224 0.8278 2.8265 20 8 2.9540 1.9604 3.4828 21 6 3.6188 1.1842 4.4817 22 6 4.2039 2.1019 5.5241 23 6 4.0463 3.4704 5.4072 24 6 4.5779 4.3117 6.3662 25 6 5.2723 3.7851 7.4395 26 6 5.4344 2.4171 7.5536 27 6 4.9019 1.5756 6.5947 28 6 5.0786 0.0841 6.7190 29 1 -0.3633 -1.0183 0.1383 30 1 -0.3634 0.6288 0.8128 31 1 -0.3633 0.3894 -0.9510 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8899 34 1 1.3873 1.7565 -1.9646 35 1 1.9876 3.1792 -1.0794 36 1 4.2862 2.2516 -1.1472 37 1 3.6859 0.8289 -2.0325 38 1 2.9076 3.1488 -3.4428 39 1 4.0046 4.4675 -6.3038 40 1 0.9162 0.3459 3.8041 41 1 0.3223 1.7369 2.8658 42 1 0.5046 0.1483 2.0838 43 1 4.4169 0.6036 4.0191 44 1 2.9042 0.5090 4.9524 45 1 3.5042 3.8819 4.5686 46 1 4.4513 5.3806 6.2771 47 1 5.6882 4.4424 8.1887 48 1 5.9772 2.0058 8.3918 49 1 4.2474 -0.3342 7.2865 50 1 5.1018 -0.3631 5.7253 51 1 6.0147 -0.1290 7.2352 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001482941812.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:52:13 Heat of formation + Delta-G solvation = -60.835932 kcal Electronic energy + Delta-G solvation = -28778.095375 eV Core-core repulsion = 24870.262602 eV Total energy + Delta-G solvation = -3907.832773 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.45791 -40.49833 -38.68476 -37.51272 -36.50109 -34.19270 -33.81910 -32.94511 -31.92931 -31.25886 -29.32832 -28.08822 -26.95189 -26.11906 -24.73092 -24.30972 -23.19433 -22.64894 -21.77069 -20.20541 -19.18001 -18.58809 -18.04879 -17.33371 -17.25683 -16.78013 -16.58954 -16.03158 -15.92737 -15.65133 -15.45400 -15.34525 -15.19073 -15.08710 -14.72479 -14.50205 -14.30186 -13.95048 -13.72118 -13.59460 -13.34352 -13.18904 -13.09391 -13.07755 -12.90983 -12.82104 -12.78967 -12.47730 -12.38592 -12.24656 -12.14954 -11.90591 -11.88836 -11.88518 -11.67623 -11.07969 -11.00310 -10.57140 -9.77374 -9.69240 -9.47253 -9.09636 -8.00021 -5.31230 0.38999 0.47436 1.44016 1.47554 1.50228 1.56098 1.66830 2.52206 2.70789 2.81583 3.32890 3.38909 3.73917 3.88714 3.96428 3.97440 4.04585 4.06855 4.10200 4.13815 4.19194 4.20462 4.30482 4.39756 4.42384 4.49014 4.51750 4.55041 4.61546 4.69669 4.79235 4.86473 4.87018 4.88305 4.93464 4.96610 5.03102 5.07305 5.14126 5.16974 5.31549 5.40514 5.45401 5.50358 5.54387 5.62158 5.66258 6.06948 6.13978 6.21309 6.40091 7.12254 7.27261 7.98524 8.24073 9.23394 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.011323 B = 0.002438 C = 0.002153 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2472.356278 B =11483.234651 C =13001.933927 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.089 3.911 3 N -0.601 5.601 4 C 0.123 3.877 5 C 0.150 3.850 6 N -0.743 5.743 7 C -0.251 4.251 8 H 0.073 0.927 9 C -0.074 4.074 10 N -0.968 5.968 11 Si 0.979 3.021 12 H -0.279 1.279 13 H -0.293 1.293 14 H -0.272 1.272 15 C 0.503 3.497 16 O -0.577 6.577 17 C 0.078 3.922 18 H 0.117 0.883 19 C -0.178 4.178 20 O -0.385 6.385 21 C 0.100 3.900 22 C -0.107 4.107 23 C -0.118 4.118 24 C -0.143 4.143 25 C -0.123 4.123 26 C -0.127 4.127 27 C -0.087 4.087 28 C -0.117 4.117 29 H 0.100 0.900 30 H 0.065 0.935 31 H 0.050 0.950 32 H 0.088 0.912 33 H 0.111 0.889 34 H 0.097 0.903 35 H 0.054 0.946 36 H -0.005 1.005 37 H 0.035 0.965 38 H 0.375 0.625 39 H 0.254 0.746 40 H 0.093 0.907 41 H 0.049 0.951 42 H 0.111 0.889 43 H 0.075 0.925 44 H 0.093 0.907 45 H 0.107 0.893 46 H 0.126 0.874 47 H 0.143 0.857 48 H 0.149 0.851 49 H 0.087 0.913 50 H 0.072 0.928 51 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.316 -15.275 28.704 32.947 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.032 4.032 3 N -0.334 5.334 4 C 0.000 4.000 5 C 0.022 3.978 6 N -0.386 5.386 7 C -0.383 4.383 8 H 0.091 0.909 9 C -0.266 4.266 10 N -0.618 5.618 11 Si 0.807 3.193 12 H -0.206 1.206 13 H -0.220 1.220 14 H -0.197 1.197 15 C 0.291 3.709 16 O -0.456 6.456 17 C 0.017 3.983 18 H 0.135 0.865 19 C -0.235 4.235 20 O -0.304 6.304 21 C 0.024 3.976 22 C -0.107 4.107 23 C -0.136 4.136 24 C -0.161 4.161 25 C -0.140 4.140 26 C -0.145 4.145 27 C -0.087 4.087 28 C -0.173 4.173 29 H 0.119 0.881 30 H 0.084 0.916 31 H 0.069 0.931 32 H 0.106 0.894 33 H 0.129 0.871 34 H 0.115 0.885 35 H 0.073 0.927 36 H 0.013 0.987 37 H 0.053 0.947 38 H 0.207 0.793 39 H 0.062 0.938 40 H 0.112 0.888 41 H 0.068 0.932 42 H 0.129 0.871 43 H 0.093 0.907 44 H 0.111 0.889 45 H 0.125 0.875 46 H 0.144 0.856 47 H 0.161 0.839 48 H 0.167 0.833 49 H 0.105 0.895 50 H 0.091 0.909 51 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -4.999 -14.531 28.705 32.560 hybrid contribution 0.541 0.971 -1.220 1.650 sum -4.458 -13.560 27.485 30.971 Atomic orbital electron populations 1.22425 0.94285 1.04290 1.02544 1.22107 0.95796 0.79994 1.05338 1.47948 1.64785 1.15800 1.04898 1.21286 0.96839 0.96935 0.84973 1.20945 0.95183 0.95076 0.86566 1.42396 1.14952 1.58727 1.22571 1.19584 0.92608 1.24449 1.01651 0.90876 1.25653 1.01405 1.00065 0.99520 1.69824 1.32408 1.36619 1.22963 0.85066 0.78963 0.76849 0.78408 1.20577 1.21959 1.19717 1.21282 0.76002 0.87534 0.86056 1.90718 1.49115 1.18757 1.86965 1.22005 0.97927 0.93567 0.84783 0.86519 1.22658 0.92731 1.03015 1.05137 1.88012 1.72751 1.34199 1.35458 1.21515 0.96151 0.92343 0.87540 1.19741 1.00373 0.94089 0.96473 1.21077 0.99633 0.94065 0.98824 1.21373 0.99189 1.00292 0.95246 1.21461 0.98447 0.96129 0.98001 1.21342 1.00492 0.93219 0.99399 1.19980 0.97129 0.97950 0.93678 1.20905 1.03687 0.89191 1.03518 0.88107 0.91607 0.93122 0.89353 0.87133 0.88519 0.92698 0.98686 0.94697 0.79279 0.93754 0.88835 0.93194 0.87090 0.90726 0.88939 0.87504 0.85578 0.83898 0.83345 0.89489 0.90898 0.90083 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.31 9.11 71.98 0.66 -1.65 16 2 C 0.09 1.45 5.59 86.38 0.48 1.93 16 3 N -0.60 -16.74 2.47 -821.82 -2.03 -18.77 16 4 C 0.12 4.44 5.59 86.38 0.48 4.92 16 5 C 0.15 6.59 6.58 86.38 0.57 7.16 16 6 N -0.74 -40.47 5.60 -343.46 -1.92 -42.39 16 7 C -0.25 -14.81 9.99 84.03 0.84 -13.97 16 8 H 0.07 4.16 7.83 -2.91 -0.02 4.14 16 9 C -0.07 -4.41 5.50 84.86 0.47 -3.94 16 10 N -0.97 -61.02 13.06 21.65 0.28 -60.73 16 11 Si 0.98 47.46 29.55 68.60 2.03 49.49 16 12 H -0.28 -12.99 7.11 99.48 0.71 -12.28 16 13 H -0.29 -14.23 7.11 99.48 0.71 -13.52 16 14 H -0.27 -12.63 7.11 99.48 0.71 -11.93 16 15 C 0.50 16.08 7.06 87.66 0.62 16.70 16 16 O -0.58 -25.71 16.08 15.81 0.25 -25.45 16 17 C 0.08 1.67 2.30 29.85 0.07 1.74 16 18 H 0.12 1.69 6.80 -2.38 -0.02 1.68 16 19 C -0.18 -2.57 8.50 71.98 0.61 -1.96 16 20 O -0.39 -10.21 8.02 -130.11 -1.04 -11.25 16 21 C 0.10 1.86 4.86 71.24 0.35 2.21 16 22 C -0.11 -2.35 5.88 -19.87 -0.12 -2.47 16 23 C -0.12 -3.13 9.38 22.27 0.21 -2.92 16 24 C -0.14 -3.23 10.05 22.27 0.22 -3.00 16 25 C -0.12 -2.19 10.05 22.27 0.22 -1.96 16 26 C -0.13 -2.02 9.70 22.27 0.22 -1.81 16 27 C -0.09 -1.49 5.88 -19.86 -0.12 -1.61 16 28 C -0.12 -1.14 9.60 71.24 0.68 -0.46 16 29 H 0.10 0.70 8.14 -2.39 -0.02 0.69 16 30 H 0.07 0.90 5.93 -2.39 -0.01 0.88 16 31 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 32 H 0.09 1.44 8.12 -2.38 -0.02 1.42 16 33 H 0.11 1.10 5.34 -2.39 -0.01 1.09 16 34 H 0.10 3.09 8.07 -2.39 -0.02 3.08 16 35 H 0.05 2.33 7.35 -2.39 -0.02 2.31 16 36 H 0.00 -0.24 8.14 -2.38 -0.02 -0.26 16 37 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 38 H 0.38 21.42 7.67 -92.70 -0.71 20.71 16 39 H 0.25 15.37 8.31 -92.71 -0.77 14.60 16 40 H 0.09 0.90 7.77 -2.39 -0.02 0.89 16 41 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 42 H 0.11 1.08 3.46 -2.39 -0.01 1.07 16 43 H 0.07 1.20 7.42 -2.39 -0.02 1.18 16 44 H 0.09 1.14 7.77 -2.39 -0.02 1.12 16 45 H 0.11 3.39 7.01 -2.91 -0.02 3.37 16 46 H 0.13 2.54 8.06 -2.91 -0.02 2.51 16 47 H 0.14 1.78 8.06 -2.91 -0.02 1.76 16 48 H 0.15 1.49 8.06 -2.91 -0.02 1.46 16 49 H 0.09 0.61 8.14 -2.39 -0.02 0.59 16 50 H 0.07 0.64 6.64 -2.39 -0.02 0.62 16 51 H 0.08 0.60 8.09 -2.39 -0.02 0.59 16 Total: -1.00 -83.54 408.33 4.24 -79.30 By element: Atomic # 1 Polarization: 30.68 SS G_CDS: 0.21 Total: 30.89 kcal Atomic # 6 Polarization: -7.54 SS G_CDS: 6.46 Total: -1.08 kcal Atomic # 7 Polarization: -118.23 SS G_CDS: -3.67 Total: -121.90 kcal Atomic # 8 Polarization: -35.91 SS G_CDS: -0.79 Total: -36.70 kcal Atomic # 14 Polarization: 47.46 SS G_CDS: 2.03 Total: 49.49 kcal Total: -83.54 4.24 -79.30 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001482941812.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.467 kcal (2) G-P(sol) polarization free energy of solvation -83.544 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.077 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.241 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.303 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.836 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds