Wall clock time and date at job start Tue Mar 31 2020 18:51:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46502 * 109.47072 * 2 1 4 4 C 1.46500 * 119.99688 * 269.99424 * 3 2 1 5 5 C 1.52999 * 109.47195 * 270.00192 * 4 3 2 6 6 N 1.46506 * 109.46922 * 180.02562 * 5 4 3 7 7 C 1.36936 * 119.99987 * 179.97438 * 6 5 4 8 8 H 1.08005 * 119.99834 * 0.02562 * 7 6 5 9 9 C 1.38810 * 119.99919 * 179.97438 * 7 6 5 10 10 N 1.31615 * 120.00277 * 0.02562 * 9 7 6 11 11 Si 1.86799 * 119.99980 * 180.02562 * 9 7 6 12 12 H 1.48500 * 109.47427 * 90.00347 * 11 9 7 13 13 H 1.48502 * 109.47215 * 210.00380 * 11 9 7 14 14 H 1.48505 * 109.47306 * 330.00555 * 11 9 7 15 15 C 1.34779 * 120.00193 * 90.00117 * 3 2 1 16 16 O 1.21278 * 119.99957 * 180.02562 * 15 3 2 17 17 C 1.50694 * 119.99862 * 359.97438 * 15 3 2 18 18 C 1.53004 * 109.47132 * 180.02562 * 17 15 3 19 19 H 1.08998 * 109.46845 * 54.99785 * 18 17 15 20 20 C 1.52997 * 109.46913 * 295.00114 * 18 17 15 21 21 C 1.50697 * 109.47165 * 174.99796 * 18 17 15 22 22 C 1.38271 * 119.94043 * 60.32604 * 21 18 17 23 23 C 1.38147 * 120.05186 * 180.27986 * 22 21 18 24 24 C 1.38736 * 119.94540 * 359.41290 * 23 22 21 25 25 O 1.35892 * 120.05957 * 180.26040 * 24 23 22 26 26 C 1.42899 * 117.00396 * 180.02562 * 25 24 23 27 27 C 1.38740 * 119.88595 * 0.28283 * 24 23 22 28 28 C 1.38146 * 119.94197 * 359.97438 * 27 24 23 29 29 H 1.08995 * 109.46910 * 300.00086 * 1 2 3 30 30 H 1.08997 * 109.46717 * 60.00553 * 1 2 3 31 31 H 1.08997 * 109.46839 * 180.02562 * 1 2 3 32 32 H 1.08995 * 109.47562 * 239.99535 * 2 1 3 33 33 H 1.09008 * 109.47152 * 119.99427 * 2 1 3 34 34 H 1.08997 * 109.46992 * 30.00461 * 4 3 2 35 35 H 1.09003 * 109.46975 * 150.00122 * 4 3 2 36 36 H 1.08995 * 109.47130 * 299.99547 * 5 4 3 37 37 H 1.08994 * 109.47116 * 60.00310 * 5 4 3 38 38 H 0.97006 * 120.00093 * 359.97438 * 6 5 4 39 39 H 0.97002 * 120.00504 * 179.97438 * 10 9 7 40 40 H 1.08996 * 109.47454 * 60.00520 * 17 15 3 41 41 H 1.09005 * 109.46965 * 300.00256 * 17 15 3 42 42 H 1.09009 * 109.47314 * 299.99911 * 20 18 17 43 43 H 1.09000 * 109.47122 * 59.99763 * 20 18 17 44 44 H 1.08999 * 109.47351 * 179.97438 * 20 18 17 45 45 H 1.07995 * 119.98029 * 359.96940 * 22 21 18 46 46 H 1.08002 * 120.03108 * 179.69762 * 23 22 21 47 47 H 1.09002 * 109.46662 * 59.99805 * 26 25 24 48 48 H 1.09005 * 109.47349 * 179.97438 * 26 25 24 49 49 H 1.08997 * 109.47463 * 300.00468 * 26 25 24 50 50 H 1.07993 * 120.02463 * 180.02562 * 27 24 23 51 51 H 1.08006 * 119.96944 * 179.97438 * 28 27 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2626 2.0717 -1.2688 5 6 3.7076 1.8313 -1.7103 6 7 3.9520 2.5223 -2.9789 7 6 5.1844 2.4503 -3.5714 8 1 5.9761 1.8836 -3.1039 9 6 5.4158 3.1046 -4.7736 10 7 4.4508 3.7947 -5.3436 11 14 7.0967 3.0057 -5.5823 12 1 7.1381 1.8364 -6.4967 13 1 7.3476 4.2482 -6.3560 14 1 8.1408 2.8540 -4.5372 15 6 2.2430 2.0166 1.1672 16 8 2.6468 3.1602 1.1672 17 6 1.9913 1.3064 2.4723 18 6 2.3223 2.2440 3.6352 19 1 1.7567 3.1696 3.5279 20 6 3.8198 2.5576 3.6272 21 6 1.9552 1.5790 4.9367 22 6 2.5547 0.3856 5.2951 23 6 2.2156 -0.2289 6.4850 24 6 1.2818 0.3584 7.3263 25 8 0.9505 -0.2415 8.4998 26 6 -0.0186 0.4198 9.3156 27 6 0.6864 1.5590 6.9673 28 6 1.0250 2.1668 5.7738 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5137 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.8934 -0.5139 -0.8899 33 1 1.8934 -0.5138 0.8901 34 1 1.5818 1.6876 -2.0284 35 1 2.0956 3.1410 -1.1385 36 1 4.3884 2.2155 -0.9508 37 1 3.8746 0.7621 -1.8406 38 1 3.2408 3.0309 -3.3990 39 1 4.6126 4.2522 -6.1835 40 1 2.6212 0.4188 2.5303 41 1 0.9432 1.0126 2.5298 42 1 4.3854 1.6319 3.7344 43 1 4.0852 3.0385 2.6858 44 1 4.0555 3.2258 4.4554 45 1 3.2848 -0.0690 4.6420 46 1 2.6805 -1.1635 6.7623 47 1 -0.9529 0.5178 8.7627 48 1 -0.1915 -0.1638 10.2199 49 1 0.3488 1.4097 9.5862 50 1 -0.0404 2.0184 7.6207 51 1 0.5615 3.1013 5.4937 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001482970038.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:51:15 Heat of formation + Delta-G solvation = -45.189356 kcal Electronic energy + Delta-G solvation = -28454.604016 eV Core-core repulsion = 24547.449730 eV Total energy + Delta-G solvation = -3907.154286 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 1.57 seconds Orbital eigenvalues (eV) -40.61548 -39.94000 -38.20570 -36.28469 -34.72378 -34.44150 -31.77631 -31.42625 -30.27274 -29.67222 -28.55493 -27.55663 -26.82949 -23.89726 -23.52001 -23.06148 -22.87236 -21.51624 -20.27755 -18.70158 -18.50856 -17.30602 -17.05356 -16.55775 -16.10062 -16.00953 -15.49377 -15.24000 -14.90266 -14.58592 -14.21553 -13.91905 -13.91586 -13.63169 -13.59984 -13.51171 -13.31648 -13.07393 -12.92380 -12.74027 -12.67650 -12.39580 -12.10901 -11.93867 -11.54405 -11.35670 -11.26615 -11.21348 -11.10229 -10.98727 -10.91859 -10.83829 -10.72843 -10.62433 -10.08329 -9.73619 -9.47665 -9.27747 -8.84285 -8.46087 -8.35883 -6.89899 -5.73286 -3.02273 1.05964 1.13804 2.80422 2.92097 3.11082 3.46186 3.47924 3.51306 3.53482 4.38509 4.45082 4.54964 4.63988 4.68292 4.73054 4.81221 4.82669 4.86496 4.97778 5.04003 5.10080 5.11850 5.18030 5.28291 5.32272 5.43331 5.54785 5.55887 5.61455 5.65906 5.69285 5.70251 5.76359 5.87070 5.89766 6.01224 6.04788 6.07550 6.10746 6.13059 6.19164 6.40687 6.46031 6.50037 6.63576 6.79077 6.96587 7.05952 7.58551 7.73047 8.37770 8.45489 9.56124 10.12855 10.47859 11.49629 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.023051 B = 0.001954 C = 0.001891 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1214.385887 B =14322.765471 C =14801.306779 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.103 3.897 3 N -0.608 5.608 4 C 0.108 3.892 5 C 0.144 3.856 6 N -0.730 5.730 7 C -0.237 4.237 8 H 0.070 0.930 9 C -0.014 4.014 10 N -0.933 5.933 11 Si 0.908 3.092 12 H -0.290 1.290 13 H -0.291 1.291 14 H -0.282 1.282 15 C 0.511 3.489 16 O -0.530 6.530 17 C -0.132 4.132 18 C -0.032 4.032 19 H 0.085 0.915 20 C -0.150 4.150 21 C -0.108 4.108 22 C -0.074 4.074 23 C -0.149 4.149 24 C 0.118 3.882 25 O -0.320 6.320 26 C 0.028 3.972 27 C -0.206 4.206 28 C -0.076 4.076 29 H 0.055 0.945 30 H 0.061 0.939 31 H 0.065 0.935 32 H 0.083 0.917 33 H 0.077 0.923 34 H 0.074 0.926 35 H 0.084 0.916 36 H 0.022 0.978 37 H 0.017 0.983 38 H 0.384 0.616 39 H 0.255 0.745 40 H 0.092 0.908 41 H 0.091 0.909 42 H 0.049 0.951 43 H 0.082 0.918 44 H 0.052 0.948 45 H 0.130 0.870 46 H 0.129 0.871 47 H 0.055 0.945 48 H 0.099 0.901 49 H 0.055 0.945 50 H 0.126 0.874 51 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.573 -10.034 27.802 32.121 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.021 4.021 3 N -0.342 5.342 4 C -0.015 4.015 5 C 0.015 3.985 6 N -0.375 5.375 7 C -0.368 4.368 8 H 0.088 0.912 9 C -0.210 4.210 10 N -0.582 5.582 11 Si 0.739 3.261 12 H -0.217 1.217 13 H -0.217 1.217 14 H -0.208 1.208 15 C 0.299 3.701 16 O -0.407 6.407 17 C -0.172 4.172 18 C -0.050 4.050 19 H 0.103 0.897 20 C -0.207 4.207 21 C -0.108 4.108 22 C -0.092 4.092 23 C -0.168 4.168 24 C 0.073 3.927 25 O -0.234 6.234 26 C -0.067 4.067 27 C -0.225 4.225 28 C -0.094 4.094 29 H 0.074 0.926 30 H 0.080 0.920 31 H 0.084 0.916 32 H 0.101 0.899 33 H 0.095 0.905 34 H 0.093 0.907 35 H 0.102 0.898 36 H 0.040 0.960 37 H 0.034 0.966 38 H 0.217 0.783 39 H 0.065 0.935 40 H 0.110 0.890 41 H 0.110 0.890 42 H 0.068 0.932 43 H 0.101 0.899 44 H 0.071 0.929 45 H 0.147 0.853 46 H 0.147 0.853 47 H 0.073 0.927 48 H 0.117 0.883 49 H 0.073 0.927 50 H 0.144 0.856 51 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -12.113 -9.633 27.852 31.863 hybrid contribution 0.397 0.206 -0.597 0.746 sum -11.716 -9.427 27.255 31.129 Atomic orbital electron populations 1.22216 0.96013 1.02151 1.02576 1.21580 0.94276 0.82758 1.03461 1.47981 1.65675 1.14180 1.06349 1.21673 0.98000 0.98387 0.83408 1.20898 0.92849 0.95387 0.89343 1.42215 1.12846 1.60760 1.21686 1.19210 0.89313 1.25998 1.02327 0.91221 1.24743 0.97837 1.00377 0.98070 1.69660 1.31588 1.37418 1.19552 0.86166 0.83704 0.76950 0.79238 1.21737 1.21729 1.20764 1.20594 0.77401 0.86844 0.85262 1.90699 1.44920 1.17911 1.87136 1.21814 1.03593 0.99669 0.92100 1.19831 0.98401 0.97663 0.89140 0.89658 1.21982 0.93642 1.01443 1.03681 1.19851 0.98022 0.95936 0.97011 1.20853 0.98459 0.94565 0.95362 1.20424 0.99787 1.01836 0.94731 1.19044 0.95349 0.92126 0.86149 1.86059 1.58602 1.49085 1.29640 1.23042 0.90919 0.98362 0.94414 1.21212 1.04575 0.96934 0.99772 1.20894 0.96220 0.99218 0.93039 0.92609 0.92018 0.91564 0.89854 0.90512 0.90715 0.89789 0.95964 0.96564 0.78293 0.93520 0.88954 0.89025 0.93167 0.89915 0.92866 0.85263 0.85288 0.92668 0.88309 0.92671 0.85624 0.85705 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.46 10.24 37.16 0.38 -1.08 16 2 C 0.10 1.03 5.93 -4.04 -0.02 1.00 16 3 N -0.61 -8.43 2.47 -173.69 -0.43 -8.86 16 4 C 0.11 1.87 5.52 -4.04 -0.02 1.84 16 5 C 0.14 3.07 6.58 -4.04 -0.03 3.04 16 6 N -0.73 -19.29 5.60 -59.91 -0.34 -19.63 16 7 C -0.24 -6.88 9.99 -15.06 -0.15 -7.03 16 8 H 0.07 1.97 7.83 -52.48 -0.41 1.56 16 9 C -0.01 -0.43 5.50 -17.43 -0.10 -0.52 16 10 N -0.93 -28.80 13.06 55.49 0.72 -28.08 16 11 Si 0.91 22.91 29.55 -169.99 -5.02 17.89 16 12 H -0.29 -7.22 7.11 56.52 0.40 -6.81 16 13 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 14 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 15 C 0.51 7.31 7.39 -10.99 -0.08 7.23 16 16 O -0.53 -9.72 13.55 5.56 0.08 -9.65 16 17 C -0.13 -1.33 3.47 -27.88 -0.10 -1.43 16 18 C -0.03 -0.33 2.21 -91.77 -0.20 -0.53 16 19 H 0.09 0.98 7.68 -51.93 -0.40 0.58 16 20 C -0.15 -1.75 8.74 37.16 0.32 -1.42 16 21 C -0.11 -1.01 4.78 -104.60 -0.50 -1.51 16 22 C -0.07 -0.65 8.75 -39.60 -0.35 -1.00 16 23 C -0.15 -1.34 9.99 -39.43 -0.39 -1.73 16 24 C 0.12 1.10 6.69 -39.21 -0.26 0.84 16 25 O -0.32 -2.82 10.50 -19.40 -0.20 -3.03 16 26 C 0.03 0.14 9.81 101.05 0.99 1.13 16 27 C -0.21 -1.74 9.04 -39.43 -0.36 -2.09 16 28 C -0.08 -0.67 9.66 -39.61 -0.38 -1.05 16 29 H 0.05 0.46 7.22 -51.93 -0.37 0.09 16 30 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 31 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.08 0.86 8.07 -51.93 -0.42 0.44 16 33 H 0.08 0.61 6.44 -51.92 -0.33 0.27 16 34 H 0.07 1.20 8.07 -51.93 -0.42 0.78 16 35 H 0.08 1.62 7.42 -51.93 -0.39 1.24 16 36 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 38 H 0.38 10.52 7.67 -40.82 -0.31 10.21 16 39 H 0.25 7.58 8.31 -40.82 -0.34 7.24 16 40 H 0.09 0.79 6.84 -51.93 -0.36 0.44 16 41 H 0.09 0.79 7.18 -51.93 -0.37 0.42 16 42 H 0.05 0.52 7.37 -51.92 -0.38 0.13 16 43 H 0.08 1.21 5.95 -51.93 -0.31 0.90 16 44 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 45 H 0.13 0.95 7.15 -52.49 -0.38 0.58 16 46 H 0.13 0.99 8.06 -52.49 -0.42 0.57 16 47 H 0.05 0.23 7.66 -51.93 -0.40 -0.17 16 48 H 0.10 0.31 8.14 -51.93 -0.42 -0.12 16 49 H 0.05 0.24 7.66 -51.93 -0.40 -0.16 16 50 H 0.13 0.80 6.30 -52.49 -0.33 0.47 16 51 H 0.12 0.95 7.94 -52.48 -0.42 0.53 16 LS Contribution 410.04 15.07 6.18 6.18 Total: -1.00 -34.68 410.04 -8.75 -43.43 By element: Atomic # 1 Polarization: 14.54 SS G_CDS: -8.49 Total: 6.05 kcal Atomic # 6 Polarization: -3.08 SS G_CDS: -1.25 Total: -4.32 kcal Atomic # 7 Polarization: -56.52 SS G_CDS: -0.04 Total: -56.56 kcal Atomic # 8 Polarization: -12.55 SS G_CDS: -0.13 Total: -12.67 kcal Atomic # 14 Polarization: 22.91 SS G_CDS: -5.02 Total: 17.89 kcal Total LS contribution 6.18 Total: 6.18 kcal Total: -34.68 -8.75 -43.43 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001482970038.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.760 kcal (2) G-P(sol) polarization free energy of solvation -34.682 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.442 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.748 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.429 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.189 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.57 seconds