Wall clock time and date at job start Tue Mar 31 2020 18:51:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46502 * 109.47072 * 2 1 4 4 C 1.46500 * 119.99688 * 269.99424 * 3 2 1 5 5 C 1.52999 * 109.47195 * 270.00192 * 4 3 2 6 6 N 1.46506 * 109.46922 * 180.02562 * 5 4 3 7 7 C 1.36936 * 119.99987 * 179.97438 * 6 5 4 8 8 H 1.08005 * 119.99834 * 0.02562 * 7 6 5 9 9 C 1.38810 * 119.99919 * 179.97438 * 7 6 5 10 10 N 1.31615 * 120.00277 * 0.02562 * 9 7 6 11 11 Si 1.86799 * 119.99980 * 180.02562 * 9 7 6 12 12 H 1.48500 * 109.47427 * 90.00347 * 11 9 7 13 13 H 1.48502 * 109.47215 * 210.00380 * 11 9 7 14 14 H 1.48505 * 109.47306 * 330.00555 * 11 9 7 15 15 C 1.34779 * 120.00193 * 90.00117 * 3 2 1 16 16 O 1.21278 * 119.99957 * 180.02562 * 15 3 2 17 17 C 1.50694 * 119.99862 * 359.97438 * 15 3 2 18 18 C 1.53004 * 109.47132 * 180.02562 * 17 15 3 19 19 H 1.08998 * 109.46845 * 54.99785 * 18 17 15 20 20 C 1.52997 * 109.46913 * 295.00114 * 18 17 15 21 21 C 1.50697 * 109.47165 * 174.99796 * 18 17 15 22 22 C 1.38271 * 119.94043 * 60.32604 * 21 18 17 23 23 C 1.38147 * 120.05186 * 180.27986 * 22 21 18 24 24 C 1.38736 * 119.94540 * 359.41290 * 23 22 21 25 25 O 1.35892 * 120.05957 * 180.26040 * 24 23 22 26 26 C 1.42899 * 117.00396 * 180.02562 * 25 24 23 27 27 C 1.38740 * 119.88595 * 0.28283 * 24 23 22 28 28 C 1.38146 * 119.94197 * 359.97438 * 27 24 23 29 29 H 1.08995 * 109.46910 * 300.00086 * 1 2 3 30 30 H 1.08997 * 109.46717 * 60.00553 * 1 2 3 31 31 H 1.08997 * 109.46839 * 180.02562 * 1 2 3 32 32 H 1.08995 * 109.47562 * 239.99535 * 2 1 3 33 33 H 1.09008 * 109.47152 * 119.99427 * 2 1 3 34 34 H 1.08997 * 109.46992 * 30.00461 * 4 3 2 35 35 H 1.09003 * 109.46975 * 150.00122 * 4 3 2 36 36 H 1.08995 * 109.47130 * 299.99547 * 5 4 3 37 37 H 1.08994 * 109.47116 * 60.00310 * 5 4 3 38 38 H 0.97006 * 120.00093 * 359.97438 * 6 5 4 39 39 H 0.97002 * 120.00504 * 179.97438 * 10 9 7 40 40 H 1.08996 * 109.47454 * 60.00520 * 17 15 3 41 41 H 1.09005 * 109.46965 * 300.00256 * 17 15 3 42 42 H 1.09009 * 109.47314 * 299.99911 * 20 18 17 43 43 H 1.09000 * 109.47122 * 59.99763 * 20 18 17 44 44 H 1.08999 * 109.47351 * 179.97438 * 20 18 17 45 45 H 1.07995 * 119.98029 * 359.96940 * 22 21 18 46 46 H 1.08002 * 120.03108 * 179.69762 * 23 22 21 47 47 H 1.09002 * 109.46662 * 59.99805 * 26 25 24 48 48 H 1.09005 * 109.47349 * 179.97438 * 26 25 24 49 49 H 1.08997 * 109.47463 * 300.00468 * 26 25 24 50 50 H 1.07993 * 120.02463 * 180.02562 * 27 24 23 51 51 H 1.08006 * 119.96944 * 179.97438 * 28 27 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2626 2.0717 -1.2688 5 6 3.7076 1.8313 -1.7103 6 7 3.9520 2.5223 -2.9789 7 6 5.1844 2.4503 -3.5714 8 1 5.9761 1.8836 -3.1039 9 6 5.4158 3.1046 -4.7736 10 7 4.4508 3.7947 -5.3436 11 14 7.0967 3.0057 -5.5823 12 1 7.1381 1.8364 -6.4967 13 1 7.3476 4.2482 -6.3560 14 1 8.1408 2.8540 -4.5372 15 6 2.2430 2.0166 1.1672 16 8 2.6468 3.1602 1.1672 17 6 1.9913 1.3064 2.4723 18 6 2.3223 2.2440 3.6352 19 1 1.7567 3.1696 3.5279 20 6 3.8198 2.5576 3.6272 21 6 1.9552 1.5790 4.9367 22 6 2.5547 0.3856 5.2951 23 6 2.2156 -0.2289 6.4850 24 6 1.2818 0.3584 7.3263 25 8 0.9505 -0.2415 8.4998 26 6 -0.0186 0.4198 9.3156 27 6 0.6864 1.5590 6.9673 28 6 1.0250 2.1668 5.7738 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5137 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.8934 -0.5139 -0.8899 33 1 1.8934 -0.5138 0.8901 34 1 1.5818 1.6876 -2.0284 35 1 2.0956 3.1410 -1.1385 36 1 4.3884 2.2155 -0.9508 37 1 3.8746 0.7621 -1.8406 38 1 3.2408 3.0309 -3.3990 39 1 4.6126 4.2522 -6.1835 40 1 2.6212 0.4188 2.5303 41 1 0.9432 1.0126 2.5298 42 1 4.3854 1.6319 3.7344 43 1 4.0852 3.0385 2.6858 44 1 4.0555 3.2258 4.4554 45 1 3.2848 -0.0690 4.6420 46 1 2.6805 -1.1635 6.7623 47 1 -0.9529 0.5178 8.7627 48 1 -0.1915 -0.1638 10.2199 49 1 0.3488 1.4097 9.5862 50 1 -0.0404 2.0184 7.6207 51 1 0.5615 3.1013 5.4937 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001482970038.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:51:14 Heat of formation + Delta-G solvation = -65.968877 kcal Electronic energy + Delta-G solvation = -28455.505084 eV Core-core repulsion = 24547.449730 eV Total energy + Delta-G solvation = -3908.055354 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -41.41256 -40.86538 -38.90576 -37.55683 -36.35269 -35.46347 -33.60345 -32.04984 -31.54608 -30.50455 -29.62362 -28.20348 -28.05777 -25.65801 -24.36584 -24.01914 -23.61142 -23.07224 -21.14180 -19.84235 -19.16821 -19.06876 -18.19770 -17.49219 -17.02321 -16.61430 -16.54571 -16.35773 -16.26596 -15.59252 -15.39506 -15.20601 -15.08787 -14.74020 -14.70710 -14.49856 -14.34972 -14.22679 -14.00086 -13.73137 -13.35272 -13.08958 -13.03526 -12.91833 -12.83537 -12.77302 -12.61961 -12.38003 -12.19252 -12.13805 -12.05819 -12.02361 -11.88122 -11.77947 -11.67715 -11.47994 -10.98461 -10.65802 -9.91117 -9.66799 -9.07083 -9.01508 -7.98418 -5.29201 0.42939 0.46861 1.45440 1.48296 1.56776 1.69428 2.00486 2.42373 2.55361 2.81759 3.34677 3.50100 3.77053 3.94585 3.99550 4.01249 4.07073 4.12859 4.17572 4.23075 4.26279 4.32886 4.40642 4.45880 4.48269 4.50447 4.56013 4.57939 4.63117 4.70076 4.73312 4.79750 4.86063 4.91860 4.97361 5.04882 5.08596 5.12351 5.12988 5.24941 5.32077 5.40456 5.41731 5.43272 5.50359 5.62211 5.76763 5.85514 6.22938 6.48544 6.49591 7.26363 7.29077 8.01129 8.26391 9.24878 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.023051 B = 0.001954 C = 0.001891 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1214.385887 B =14322.765471 C =14801.306779 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.096 3.904 3 N -0.607 5.607 4 C 0.123 3.877 5 C 0.151 3.849 6 N -0.743 5.743 7 C -0.251 4.251 8 H 0.073 0.927 9 C -0.074 4.074 10 N -0.967 5.967 11 Si 0.978 3.022 12 H -0.281 1.281 13 H -0.293 1.293 14 H -0.272 1.272 15 C 0.504 3.496 16 O -0.579 6.579 17 C -0.120 4.120 18 C -0.025 4.025 19 H 0.069 0.931 20 C -0.147 4.147 21 C -0.114 4.114 22 C -0.074 4.074 23 C -0.160 4.160 24 C 0.108 3.892 25 O -0.337 6.337 26 C 0.019 3.981 27 C -0.209 4.209 28 C -0.083 4.083 29 H 0.059 0.941 30 H 0.045 0.955 31 H 0.090 0.910 32 H 0.082 0.918 33 H 0.106 0.894 34 H 0.088 0.912 35 H 0.057 0.943 36 H 0.000 1.000 37 H 0.029 0.971 38 H 0.375 0.625 39 H 0.253 0.747 40 H 0.117 0.883 41 H 0.115 0.885 42 H 0.064 0.936 43 H 0.047 0.953 44 H 0.053 0.947 45 H 0.144 0.856 46 H 0.138 0.862 47 H 0.063 0.937 48 H 0.117 0.883 49 H 0.061 0.939 50 H 0.144 0.856 51 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.984 -12.227 29.345 34.340 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.026 4.026 3 N -0.340 5.340 4 C 0.000 4.000 5 C 0.023 3.977 6 N -0.387 5.387 7 C -0.383 4.383 8 H 0.091 0.909 9 C -0.266 4.266 10 N -0.618 5.618 11 Si 0.806 3.194 12 H -0.208 1.208 13 H -0.219 1.219 14 H -0.197 1.197 15 C 0.294 3.706 16 O -0.459 6.459 17 C -0.160 4.160 18 C -0.044 4.044 19 H 0.088 0.912 20 C -0.204 4.204 21 C -0.115 4.115 22 C -0.092 4.092 23 C -0.178 4.178 24 C 0.063 3.937 25 O -0.252 6.252 26 C -0.075 4.075 27 C -0.227 4.227 28 C -0.101 4.101 29 H 0.078 0.922 30 H 0.065 0.935 31 H 0.109 0.891 32 H 0.100 0.900 33 H 0.124 0.876 34 H 0.107 0.893 35 H 0.076 0.924 36 H 0.018 0.982 37 H 0.047 0.953 38 H 0.207 0.793 39 H 0.062 0.938 40 H 0.135 0.865 41 H 0.133 0.867 42 H 0.083 0.917 43 H 0.066 0.934 44 H 0.072 0.928 45 H 0.161 0.839 46 H 0.156 0.844 47 H 0.082 0.918 48 H 0.135 0.865 49 H 0.080 0.920 50 H 0.161 0.839 51 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -12.544 -11.882 29.438 34.134 hybrid contribution 0.487 0.869 -0.966 1.388 sum -12.057 -11.012 28.472 32.822 Atomic orbital electron populations 1.22175 0.94621 1.03568 1.02054 1.21907 0.95397 0.80383 1.04889 1.48088 1.65402 1.15629 1.04861 1.21254 0.95634 0.97537 0.85625 1.20941 0.94974 0.95059 0.86726 1.42406 1.12005 1.61133 1.23107 1.19596 0.90335 1.25720 1.02634 0.90892 1.25628 1.01765 1.00368 0.98832 1.69818 1.33657 1.38428 1.19864 0.85079 0.79231 0.76837 0.78216 1.20765 1.21937 1.19702 1.21418 0.76170 0.86441 0.86537 1.90688 1.47032 1.20278 1.87857 1.21834 1.05476 0.99642 0.89016 1.19691 0.97156 0.97352 0.90151 0.91232 1.21916 0.94977 1.01807 1.01719 1.19719 0.98830 0.96393 0.96512 1.20986 0.98433 0.94221 0.95527 1.20631 0.99964 1.02348 0.94866 1.19265 0.95488 0.92424 0.86492 1.86038 1.59523 1.49895 1.29697 1.23305 0.90548 0.98968 0.94713 1.21402 1.04776 0.96742 0.99799 1.21064 0.96238 0.99587 0.93219 0.92169 0.93549 0.89120 0.89969 0.87578 0.89337 0.92420 0.98185 0.95328 0.79325 0.93809 0.86549 0.86677 0.91737 0.93376 0.92811 0.83869 0.84378 0.91798 0.86493 0.91996 0.83866 0.84975 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.39 10.24 71.98 0.74 -1.65 16 2 C 0.10 1.67 5.93 86.38 0.51 2.19 16 3 N -0.61 -16.36 2.47 -821.81 -2.03 -18.40 16 4 C 0.12 4.35 5.52 86.38 0.48 4.83 16 5 C 0.15 6.55 6.58 86.38 0.57 7.12 16 6 N -0.74 -40.15 5.60 -343.45 -1.92 -42.07 16 7 C -0.25 -14.73 9.99 84.03 0.84 -13.89 16 8 H 0.07 4.13 7.83 -2.91 -0.02 4.11 16 9 C -0.07 -4.36 5.50 84.86 0.47 -3.89 16 10 N -0.97 -60.63 13.06 21.65 0.28 -60.35 16 11 Si 0.98 47.27 29.55 68.60 2.03 49.30 16 12 H -0.28 -13.10 7.11 99.48 0.71 -12.39 16 13 H -0.29 -14.16 7.11 99.48 0.71 -13.45 16 14 H -0.27 -12.57 7.11 99.48 0.71 -11.86 16 15 C 0.50 14.28 7.39 87.65 0.65 14.93 16 16 O -0.58 -22.13 13.55 -3.02 -0.04 -22.17 16 17 C -0.12 -2.19 3.47 29.85 0.10 -2.09 16 18 C -0.02 -0.49 2.21 -11.54 -0.03 -0.52 16 19 H 0.07 1.62 7.68 -2.39 -0.02 1.60 16 20 C -0.15 -3.41 8.74 71.98 0.63 -2.78 16 21 C -0.11 -1.95 4.78 -19.85 -0.09 -2.04 16 22 C -0.07 -1.13 8.75 22.26 0.19 -0.93 16 23 C -0.16 -2.56 9.99 22.37 0.22 -2.34 16 24 C 0.11 1.82 6.69 22.51 0.15 1.97 16 25 O -0.34 -5.38 10.50 -92.33 -0.97 -6.35 16 26 C 0.02 0.15 9.81 113.37 1.11 1.26 16 27 C -0.21 -3.14 9.04 22.37 0.20 -2.94 16 28 C -0.08 -1.35 9.66 22.25 0.22 -1.13 16 29 H 0.06 0.82 7.22 -2.39 -0.02 0.81 16 30 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 31 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 32 H 0.08 1.49 8.07 -2.39 -0.02 1.47 16 33 H 0.11 1.26 6.44 -2.38 -0.02 1.24 16 34 H 0.09 2.86 8.07 -2.39 -0.02 2.84 16 35 H 0.06 2.34 7.42 -2.39 -0.02 2.32 16 36 H 0.00 0.01 8.14 -2.39 -0.02 -0.01 16 37 H 0.03 1.19 8.14 -2.39 -0.02 1.17 16 38 H 0.37 21.23 7.67 -92.70 -0.71 20.52 16 39 H 0.25 15.27 8.31 -92.71 -0.77 14.49 16 40 H 0.12 1.60 6.84 -2.39 -0.02 1.58 16 41 H 0.12 1.61 7.18 -2.38 -0.02 1.60 16 42 H 0.06 1.26 7.37 -2.38 -0.02 1.25 16 43 H 0.05 1.47 5.95 -2.39 -0.01 1.45 16 44 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 45 H 0.14 1.70 7.15 -2.91 -0.02 1.68 16 46 H 0.14 1.87 8.06 -2.91 -0.02 1.85 16 47 H 0.06 0.40 7.66 -2.39 -0.02 0.38 16 48 H 0.12 0.47 8.14 -2.38 -0.02 0.45 16 49 H 0.06 0.41 7.66 -2.39 -0.02 0.39 16 50 H 0.14 1.53 6.30 -2.91 -0.02 1.51 16 51 H 0.13 1.87 7.94 -2.91 -0.02 1.84 16 Total: -1.00 -76.78 410.04 4.51 -72.27 By element: Atomic # 1 Polarization: 29.46 SS G_CDS: 0.20 Total: 29.66 kcal Atomic # 6 Polarization: -8.86 SS G_CDS: 6.96 Total: -1.90 kcal Atomic # 7 Polarization: -117.14 SS G_CDS: -3.67 Total: -120.81 kcal Atomic # 8 Polarization: -27.51 SS G_CDS: -1.01 Total: -28.52 kcal Atomic # 14 Polarization: 47.27 SS G_CDS: 2.03 Total: 49.30 kcal Total: -76.78 4.51 -72.27 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001482970038.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.303 kcal (2) G-P(sol) polarization free energy of solvation -76.781 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.478 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.509 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.272 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.969 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds