Wall clock time and date at job start Tue Mar 31 2020 18:51:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46499 * 109.47336 * 2 1 4 4 C 1.46500 * 119.99885 * 270.00290 * 3 2 1 5 5 C 1.53004 * 109.47303 * 269.99730 * 4 3 2 6 6 N 1.46500 * 109.47303 * 180.02562 * 5 4 3 7 7 C 1.36935 * 120.00067 * 180.02562 * 6 5 4 8 8 H 1.07999 * 119.99669 * 359.97438 * 7 6 5 9 9 C 1.38805 * 120.00065 * 180.02562 * 7 6 5 10 10 N 1.31621 * 120.00035 * 359.97438 * 9 7 6 11 11 Si 1.86798 * 120.00233 * 180.02562 * 9 7 6 12 12 H 1.48496 * 109.47493 * 59.99406 * 11 9 7 13 13 H 1.48501 * 109.47286 * 179.97438 * 11 9 7 14 14 H 1.48504 * 109.46963 * 299.99655 * 11 9 7 15 15 C 1.34777 * 119.99946 * 90.00085 * 3 2 1 16 16 O 1.21278 * 119.99916 * 180.02562 * 15 3 2 17 17 C 1.50698 * 119.99931 * 0.02562 * 15 3 2 18 18 C 1.52997 * 109.46933 * 179.97438 * 17 15 3 19 19 H 1.09001 * 109.47502 * 305.00351 * 18 17 15 20 20 C 1.53006 * 109.47127 * 65.00194 * 18 17 15 21 21 C 1.50699 * 109.47078 * 184.99857 * 18 17 15 22 22 C 1.38266 * 119.94531 * 299.72837 * 21 18 17 23 23 C 1.38144 * 120.05502 * 179.72544 * 22 21 18 24 24 C 1.38725 * 119.94687 * 0.54777 * 23 22 21 25 25 O 1.35899 * 120.06252 * 179.74902 * 24 23 22 26 26 C 1.42904 * 116.99489 * 359.97438 * 25 24 23 27 27 C 1.38743 * 119.88763 * 359.72588 * 24 23 22 28 28 C 1.38141 * 119.94009 * 359.97438 * 27 24 23 29 29 H 1.09003 * 109.47170 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.47026 * 300.00061 * 1 2 3 31 31 H 1.08996 * 109.47466 * 59.99489 * 1 2 3 32 32 H 1.09004 * 109.47026 * 239.99939 * 2 1 3 33 33 H 1.08996 * 109.47466 * 120.00511 * 2 1 3 34 34 H 1.09001 * 109.47381 * 29.99929 * 4 3 2 35 35 H 1.09009 * 109.47139 * 149.99884 * 4 3 2 36 36 H 1.09001 * 109.47064 * 300.00393 * 5 4 3 37 37 H 1.09000 * 109.46659 * 60.00146 * 5 4 3 38 38 H 0.97004 * 119.99744 * 0.02562 * 6 5 4 39 39 H 0.97000 * 120.00069 * 180.02562 * 10 9 7 40 40 H 1.09000 * 109.47172 * 60.00175 * 17 15 3 41 41 H 1.08998 * 109.47020 * 299.99696 * 17 15 3 42 42 H 1.09001 * 109.47002 * 299.99574 * 20 18 17 43 43 H 1.08993 * 109.46955 * 60.00011 * 20 18 17 44 44 H 1.09000 * 109.47050 * 179.97438 * 20 18 17 45 45 H 1.07998 * 119.96752 * 359.97438 * 22 21 18 46 46 H 1.08005 * 120.02755 * 180.26868 * 23 22 21 47 47 H 1.08998 * 109.46766 * 59.99957 * 26 25 24 48 48 H 1.09003 * 109.46855 * 180.02562 * 26 25 24 49 49 H 1.08997 * 109.47392 * 300.00221 * 26 25 24 50 50 H 1.07997 * 120.02963 * 179.97438 * 27 24 23 51 51 H 1.08002 * 119.96828 * 180.02562 * 28 27 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0718 -1.2687 5 6 3.7075 1.8314 -1.7105 6 7 3.9518 2.5225 -2.9789 7 6 5.1838 2.4496 -3.5721 8 1 5.9755 1.8830 -3.1047 9 6 5.4154 3.1048 -4.7737 10 7 4.4507 3.7958 -5.3431 11 14 7.0959 3.0049 -5.5833 12 1 7.4187 1.5862 -5.8803 13 1 7.0836 3.7843 -6.8473 14 1 8.1212 3.5643 -4.6662 15 6 2.2430 2.0165 1.1672 16 8 2.6469 3.1601 1.1672 17 6 1.9924 1.3059 2.4723 18 6 2.3243 2.2431 3.6352 19 1 3.3460 2.6075 3.5279 20 6 1.3566 3.4282 3.6273 21 6 2.1918 1.4951 4.9367 22 6 0.9758 0.9428 5.2946 23 6 0.8532 0.2518 6.4845 24 6 1.9484 0.1220 7.3260 25 8 1.8291 -0.5529 8.4995 26 6 0.5457 -1.1029 8.8039 27 6 3.1661 0.6819 6.9672 28 6 3.2851 1.3666 5.7734 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3634 0.5139 -0.8899 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8899 34 1 1.5816 1.6877 -2.0284 35 1 2.0955 3.1411 -1.1384 36 1 4.3883 2.2155 -0.9509 37 1 3.8744 0.7622 -1.8409 38 1 3.2407 3.0317 -3.3986 39 1 4.6125 4.2534 -6.1830 40 1 2.6229 0.4186 2.5298 41 1 0.9445 1.0114 2.5302 42 1 1.4525 3.9693 2.6859 43 1 0.3350 3.0638 3.7346 44 1 1.5929 4.0957 4.4560 45 1 0.1222 1.0483 4.6415 46 1 -0.0958 -0.1831 6.7616 47 1 0.2613 -1.8129 8.0274 48 1 0.5883 -1.6136 9.7659 49 1 -0.1913 -0.3013 8.8508 50 1 4.0201 0.5826 7.6208 51 1 4.2328 1.8023 5.4935 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001482970039.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:51:19 Heat of formation + Delta-G solvation = -45.041786 kcal Electronic energy + Delta-G solvation = -28465.155349 eV Core-core repulsion = 24558.007462 eV Total energy + Delta-G solvation = -3907.147887 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.61724 -39.94156 -38.20121 -36.29058 -34.74158 -34.44666 -31.77560 -31.35573 -30.28217 -29.77537 -28.60382 -27.43948 -26.83880 -23.96471 -23.63619 -23.21724 -22.55095 -21.50558 -20.33086 -18.72974 -18.50239 -17.32841 -17.05215 -16.53689 -16.09804 -15.96094 -15.47485 -15.40547 -14.71040 -14.58261 -14.25903 -13.94781 -13.88468 -13.82869 -13.56964 -13.52557 -13.32638 -13.09259 -12.91820 -12.74415 -12.56867 -12.37260 -12.21180 -11.85454 -11.63875 -11.36999 -11.29875 -11.23826 -11.07406 -10.96857 -10.91269 -10.84944 -10.74859 -10.61163 -10.11865 -9.73806 -9.47906 -9.27696 -8.83657 -8.46335 -8.35455 -6.89812 -5.72989 -3.02039 1.06736 1.13698 2.80070 2.92529 3.10598 3.47144 3.48242 3.51122 3.52692 4.39030 4.42926 4.56773 4.63887 4.65770 4.73143 4.79587 4.80718 4.91669 4.94720 5.04211 5.09942 5.11308 5.18097 5.29399 5.33178 5.38817 5.50480 5.55370 5.61335 5.63627 5.67632 5.69893 5.75468 5.86624 5.89715 5.98957 6.04595 6.06485 6.09447 6.11604 6.18743 6.35099 6.45405 6.50395 6.63041 6.79064 6.96622 7.06300 7.58064 7.72790 8.37390 8.45814 9.56337 10.13017 10.48093 11.49847 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.019916 B = 0.001990 C = 0.001921 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1405.573765 B =14067.164083 C =14571.844993 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.102 3.898 3 N -0.608 5.608 4 C 0.108 3.892 5 C 0.144 3.856 6 N -0.730 5.730 7 C -0.238 4.238 8 H 0.069 0.931 9 C -0.014 4.014 10 N -0.934 5.934 11 Si 0.909 3.091 12 H -0.286 1.286 13 H -0.291 1.291 14 H -0.286 1.286 15 C 0.511 3.489 16 O -0.530 6.530 17 C -0.131 4.131 18 C -0.033 4.033 19 H 0.088 0.912 20 C -0.149 4.149 21 C -0.108 4.108 22 C -0.074 4.074 23 C -0.206 4.206 24 C 0.118 3.882 25 O -0.320 6.320 26 C 0.028 3.972 27 C -0.149 4.149 28 C -0.075 4.075 29 H 0.065 0.935 30 H 0.054 0.946 31 H 0.061 0.939 32 H 0.083 0.917 33 H 0.077 0.923 34 H 0.074 0.926 35 H 0.084 0.916 36 H 0.022 0.978 37 H 0.016 0.984 38 H 0.384 0.616 39 H 0.256 0.744 40 H 0.092 0.908 41 H 0.091 0.909 42 H 0.081 0.919 43 H 0.047 0.953 44 H 0.053 0.947 45 H 0.124 0.876 46 H 0.126 0.874 47 H 0.055 0.945 48 H 0.098 0.902 49 H 0.054 0.946 50 H 0.129 0.871 51 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.871 -11.504 27.149 32.173 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.021 4.021 3 N -0.342 5.342 4 C -0.014 4.014 5 C 0.015 3.985 6 N -0.375 5.375 7 C -0.369 4.369 8 H 0.087 0.913 9 C -0.210 4.210 10 N -0.582 5.582 11 Si 0.740 3.260 12 H -0.213 1.213 13 H -0.217 1.217 14 H -0.212 1.212 15 C 0.299 3.701 16 O -0.406 6.406 17 C -0.171 4.171 18 C -0.052 4.052 19 H 0.106 0.894 20 C -0.206 4.206 21 C -0.109 4.109 22 C -0.092 4.092 23 C -0.225 4.225 24 C 0.073 3.927 25 O -0.234 6.234 26 C -0.067 4.067 27 C -0.168 4.168 28 C -0.093 4.093 29 H 0.084 0.916 30 H 0.073 0.927 31 H 0.080 0.920 32 H 0.101 0.899 33 H 0.095 0.905 34 H 0.093 0.907 35 H 0.102 0.898 36 H 0.040 0.960 37 H 0.034 0.966 38 H 0.217 0.783 39 H 0.065 0.935 40 H 0.111 0.889 41 H 0.109 0.891 42 H 0.099 0.901 43 H 0.066 0.934 44 H 0.072 0.928 45 H 0.142 0.858 46 H 0.144 0.856 47 H 0.074 0.926 48 H 0.117 0.883 49 H 0.073 0.927 50 H 0.147 0.853 51 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -12.349 -10.966 27.250 31.864 hybrid contribution 0.334 -0.131 -0.721 0.805 sum -12.015 -11.098 26.530 31.166 Atomic orbital electron populations 1.22216 0.96025 1.02118 1.02563 1.21578 0.94254 0.82787 1.03489 1.47977 1.65687 1.14164 1.06356 1.21674 0.98000 0.98381 0.83394 1.20901 0.92860 0.95393 0.89349 1.42203 1.12871 1.60729 1.21682 1.19163 0.89326 1.26055 1.02371 0.91280 1.24745 0.97844 1.00353 0.98076 1.69652 1.31627 1.37343 1.19621 0.86237 0.83779 0.77340 0.78647 1.21300 1.21650 1.21242 1.20594 0.77424 0.86831 0.85257 1.90700 1.44971 1.17822 1.87127 1.21808 1.03563 0.99650 0.92116 1.19840 1.02019 0.94152 0.89152 0.89414 1.21965 0.97550 0.97463 1.03587 1.19847 0.93565 1.00419 0.97020 1.20788 0.97218 0.95755 0.95480 1.21202 0.98351 1.05963 0.96975 1.19042 0.94503 0.93493 0.85620 1.86065 1.33766 1.67661 1.35895 1.23041 0.83746 0.98059 1.01884 1.20430 0.95955 1.01956 0.98441 1.20958 0.98620 0.96952 0.92774 0.91581 0.92651 0.91994 0.89852 0.90515 0.90713 0.89776 0.95974 0.96569 0.78291 0.93470 0.88943 0.89107 0.90055 0.93405 0.92820 0.85829 0.85634 0.92645 0.88320 0.92694 0.85274 0.85136 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.42 10.24 37.16 0.38 -1.04 16 2 C 0.10 1.02 5.93 -4.04 -0.02 1.00 16 3 N -0.61 -8.42 2.47 -173.69 -0.43 -8.85 16 4 C 0.11 1.87 5.52 -4.04 -0.02 1.85 16 5 C 0.14 3.08 6.58 -4.04 -0.03 3.05 16 6 N -0.73 -19.33 5.60 -59.91 -0.34 -19.66 16 7 C -0.24 -6.92 9.99 -15.06 -0.15 -7.07 16 8 H 0.07 1.95 7.83 -52.49 -0.41 1.54 16 9 C -0.01 -0.42 5.50 -17.43 -0.10 -0.52 16 10 N -0.93 -28.83 13.06 55.49 0.72 -28.10 16 11 Si 0.91 22.94 29.55 -169.99 -5.02 17.92 16 12 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 13 H -0.29 -7.34 7.11 56.52 0.40 -6.93 16 14 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 15 C 0.51 7.31 7.39 -10.99 -0.08 7.23 16 16 O -0.53 -9.72 13.54 5.56 0.08 -9.64 16 17 C -0.13 -1.33 3.47 -27.89 -0.10 -1.43 16 18 C -0.03 -0.34 2.21 -91.77 -0.20 -0.55 16 19 H 0.09 1.05 7.69 -51.93 -0.40 0.65 16 20 C -0.15 -1.62 8.74 37.16 0.32 -1.29 16 21 C -0.11 -1.02 4.78 -104.60 -0.50 -1.52 16 22 C -0.07 -0.63 8.75 -39.61 -0.35 -0.97 16 23 C -0.21 -1.69 9.04 -39.44 -0.36 -2.05 16 24 C 0.12 1.10 6.69 -39.21 -0.26 0.84 16 25 O -0.32 -2.84 10.50 -19.42 -0.20 -3.04 16 26 C 0.03 0.14 9.81 101.05 0.99 1.13 16 27 C -0.15 -1.39 9.99 -39.43 -0.39 -1.78 16 28 C -0.08 -0.70 9.66 -39.61 -0.38 -1.08 16 29 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.05 0.43 7.22 -51.93 -0.38 0.06 16 31 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.08 0.86 8.07 -51.93 -0.42 0.44 16 33 H 0.08 0.61 6.44 -51.93 -0.33 0.28 16 34 H 0.07 1.20 8.07 -51.93 -0.42 0.78 16 35 H 0.08 1.62 7.42 -51.92 -0.39 1.24 16 36 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 38 H 0.38 10.53 7.67 -40.82 -0.31 10.22 16 39 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 40 H 0.09 0.84 7.40 -51.93 -0.38 0.45 16 41 H 0.09 0.74 6.63 -51.93 -0.34 0.40 16 42 H 0.08 1.10 5.95 -51.93 -0.31 0.79 16 43 H 0.05 0.45 7.37 -51.93 -0.38 0.06 16 44 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 45 H 0.12 0.86 7.15 -52.49 -0.38 0.48 16 46 H 0.13 0.76 6.30 -52.48 -0.33 0.43 16 47 H 0.05 0.23 7.66 -51.93 -0.40 -0.17 16 48 H 0.10 0.31 8.14 -51.93 -0.42 -0.12 16 49 H 0.05 0.23 7.66 -51.93 -0.40 -0.17 16 50 H 0.13 1.04 8.06 -52.49 -0.42 0.62 16 51 H 0.13 1.06 7.94 -52.49 -0.42 0.64 16 LS Contribution 410.05 15.07 6.18 6.18 Total: -1.00 -34.73 410.05 -8.75 -43.48 By element: Atomic # 1 Polarization: 14.39 SS G_CDS: -8.49 Total: 5.91 kcal Atomic # 6 Polarization: -2.94 SS G_CDS: -1.25 Total: -4.19 kcal Atomic # 7 Polarization: -56.57 SS G_CDS: -0.04 Total: -56.61 kcal Atomic # 8 Polarization: -12.56 SS G_CDS: -0.13 Total: -12.69 kcal Atomic # 14 Polarization: 22.94 SS G_CDS: -5.02 Total: 17.92 kcal Total LS contribution 6.18 Total: 6.18 kcal Total: -34.73 -8.75 -43.48 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001482970039.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.564 kcal (2) G-P(sol) polarization free energy of solvation -34.730 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.294 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.748 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.478 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.042 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds