Wall clock time and date at job start Tue Mar 31 2020 18:51:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46499 * 109.47336 * 2 1 4 4 C 1.46500 * 119.99885 * 270.00290 * 3 2 1 5 5 C 1.53004 * 109.47303 * 269.99730 * 4 3 2 6 6 N 1.46500 * 109.47303 * 180.02562 * 5 4 3 7 7 C 1.36935 * 120.00067 * 180.02562 * 6 5 4 8 8 H 1.07999 * 119.99669 * 359.97438 * 7 6 5 9 9 C 1.38805 * 120.00065 * 180.02562 * 7 6 5 10 10 N 1.31621 * 120.00035 * 359.97438 * 9 7 6 11 11 Si 1.86798 * 120.00233 * 180.02562 * 9 7 6 12 12 H 1.48496 * 109.47493 * 59.99406 * 11 9 7 13 13 H 1.48501 * 109.47286 * 179.97438 * 11 9 7 14 14 H 1.48504 * 109.46963 * 299.99655 * 11 9 7 15 15 C 1.34777 * 119.99946 * 90.00085 * 3 2 1 16 16 O 1.21278 * 119.99916 * 180.02562 * 15 3 2 17 17 C 1.50698 * 119.99931 * 0.02562 * 15 3 2 18 18 C 1.52997 * 109.46933 * 179.97438 * 17 15 3 19 19 H 1.09001 * 109.47502 * 305.00351 * 18 17 15 20 20 C 1.53006 * 109.47127 * 65.00194 * 18 17 15 21 21 C 1.50699 * 109.47078 * 184.99857 * 18 17 15 22 22 C 1.38266 * 119.94531 * 299.72837 * 21 18 17 23 23 C 1.38144 * 120.05502 * 179.72544 * 22 21 18 24 24 C 1.38725 * 119.94687 * 0.54777 * 23 22 21 25 25 O 1.35899 * 120.06252 * 179.74902 * 24 23 22 26 26 C 1.42904 * 116.99489 * 359.97438 * 25 24 23 27 27 C 1.38743 * 119.88763 * 359.72588 * 24 23 22 28 28 C 1.38141 * 119.94009 * 359.97438 * 27 24 23 29 29 H 1.09003 * 109.47170 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.47026 * 300.00061 * 1 2 3 31 31 H 1.08996 * 109.47466 * 59.99489 * 1 2 3 32 32 H 1.09004 * 109.47026 * 239.99939 * 2 1 3 33 33 H 1.08996 * 109.47466 * 120.00511 * 2 1 3 34 34 H 1.09001 * 109.47381 * 29.99929 * 4 3 2 35 35 H 1.09009 * 109.47139 * 149.99884 * 4 3 2 36 36 H 1.09001 * 109.47064 * 300.00393 * 5 4 3 37 37 H 1.09000 * 109.46659 * 60.00146 * 5 4 3 38 38 H 0.97004 * 119.99744 * 0.02562 * 6 5 4 39 39 H 0.97000 * 120.00069 * 180.02562 * 10 9 7 40 40 H 1.09000 * 109.47172 * 60.00175 * 17 15 3 41 41 H 1.08998 * 109.47020 * 299.99696 * 17 15 3 42 42 H 1.09001 * 109.47002 * 299.99574 * 20 18 17 43 43 H 1.08993 * 109.46955 * 60.00011 * 20 18 17 44 44 H 1.09000 * 109.47050 * 179.97438 * 20 18 17 45 45 H 1.07998 * 119.96752 * 359.97438 * 22 21 18 46 46 H 1.08005 * 120.02755 * 180.26868 * 23 22 21 47 47 H 1.08998 * 109.46766 * 59.99957 * 26 25 24 48 48 H 1.09003 * 109.46855 * 180.02562 * 26 25 24 49 49 H 1.08997 * 109.47392 * 300.00221 * 26 25 24 50 50 H 1.07997 * 120.02963 * 179.97438 * 27 24 23 51 51 H 1.08002 * 119.96828 * 180.02562 * 28 27 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0718 -1.2687 5 6 3.7075 1.8314 -1.7105 6 7 3.9518 2.5225 -2.9789 7 6 5.1838 2.4496 -3.5721 8 1 5.9755 1.8830 -3.1047 9 6 5.4154 3.1048 -4.7737 10 7 4.4507 3.7958 -5.3431 11 14 7.0959 3.0049 -5.5833 12 1 7.4187 1.5862 -5.8803 13 1 7.0836 3.7843 -6.8473 14 1 8.1212 3.5643 -4.6662 15 6 2.2430 2.0165 1.1672 16 8 2.6469 3.1601 1.1672 17 6 1.9924 1.3059 2.4723 18 6 2.3243 2.2431 3.6352 19 1 3.3460 2.6075 3.5279 20 6 1.3566 3.4282 3.6273 21 6 2.1918 1.4951 4.9367 22 6 0.9758 0.9428 5.2946 23 6 0.8532 0.2518 6.4845 24 6 1.9484 0.1220 7.3260 25 8 1.8291 -0.5529 8.4995 26 6 0.5457 -1.1029 8.8039 27 6 3.1661 0.6819 6.9672 28 6 3.2851 1.3666 5.7734 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3634 0.5139 -0.8899 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8899 34 1 1.5816 1.6877 -2.0284 35 1 2.0955 3.1411 -1.1384 36 1 4.3883 2.2155 -0.9509 37 1 3.8744 0.7622 -1.8409 38 1 3.2407 3.0317 -3.3986 39 1 4.6125 4.2534 -6.1830 40 1 2.6229 0.4186 2.5298 41 1 0.9445 1.0114 2.5302 42 1 1.4525 3.9693 2.6859 43 1 0.3350 3.0638 3.7346 44 1 1.5929 4.0957 4.4560 45 1 0.1222 1.0483 4.6415 46 1 -0.0958 -0.1831 6.7616 47 1 0.2613 -1.8129 8.0274 48 1 0.5883 -1.6136 9.7659 49 1 -0.1913 -0.3013 8.8508 50 1 4.0201 0.5826 7.6208 51 1 4.2328 1.8023 5.4935 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001482970039.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:51:18 Heat of formation + Delta-G solvation = -65.929399 kcal Electronic energy + Delta-G solvation = -28466.061104 eV Core-core repulsion = 24558.007462 eV Total energy + Delta-G solvation = -3908.053642 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.41531 -40.86440 -38.90023 -37.56053 -36.35529 -35.47964 -33.60461 -31.98020 -31.54478 -30.57416 -29.68135 -28.20152 -27.92835 -25.65322 -24.52026 -24.12492 -23.45925 -22.96134 -21.18973 -19.87258 -19.17434 -19.06123 -18.20360 -17.33928 -17.21268 -16.61494 -16.56114 -16.38282 -16.16007 -15.48397 -15.41245 -15.13931 -15.12634 -14.90586 -14.68693 -14.50123 -14.43921 -14.25551 -13.96680 -13.60602 -13.33182 -13.12177 -13.08026 -12.87999 -12.76819 -12.73087 -12.63018 -12.34370 -12.30648 -12.18084 -12.02803 -12.01015 -11.88011 -11.81317 -11.65728 -11.46281 -10.98246 -10.66534 -9.91590 -9.66465 -9.07594 -9.01220 -7.98599 -5.29527 0.42896 0.46791 1.45047 1.49341 1.55437 1.69221 2.00319 2.42846 2.55195 2.81728 3.34176 3.49933 3.76213 3.96653 3.97813 4.03228 4.05056 4.14438 4.16739 4.22948 4.25816 4.35526 4.42889 4.45326 4.48058 4.51162 4.56148 4.58479 4.62347 4.69955 4.74576 4.78011 4.86146 4.91989 4.96637 5.06824 5.08650 5.11720 5.13318 5.25399 5.34068 5.38848 5.41899 5.42555 5.50182 5.62190 5.76620 5.85974 6.22616 6.49430 6.49494 7.26231 7.28749 8.00684 8.26175 9.24412 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.019916 B = 0.001990 C = 0.001921 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1405.573765 B =14067.164083 C =14571.844993 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.095 3.905 3 N -0.607 5.607 4 C 0.124 3.876 5 C 0.150 3.850 6 N -0.743 5.743 7 C -0.253 4.253 8 H 0.072 0.928 9 C -0.073 4.073 10 N -0.967 5.967 11 Si 0.979 3.021 12 H -0.273 1.273 13 H -0.291 1.291 14 H -0.281 1.281 15 C 0.504 3.496 16 O -0.579 6.579 17 C -0.119 4.119 18 C -0.028 4.028 19 H 0.064 0.936 20 C -0.144 4.144 21 C -0.115 4.115 22 C -0.072 4.072 23 C -0.205 4.205 24 C 0.109 3.891 25 O -0.340 6.340 26 C 0.019 3.981 27 C -0.164 4.164 28 C -0.084 4.084 29 H 0.090 0.910 30 H 0.063 0.937 31 H 0.045 0.955 32 H 0.080 0.920 33 H 0.104 0.896 34 H 0.089 0.911 35 H 0.058 0.942 36 H -0.001 1.001 37 H 0.028 0.972 38 H 0.375 0.625 39 H 0.253 0.747 40 H 0.110 0.890 41 H 0.121 0.879 42 H 0.050 0.950 43 H 0.068 0.932 44 H 0.051 0.949 45 H 0.144 0.856 46 H 0.149 0.851 47 H 0.066 0.934 48 H 0.115 0.885 49 H 0.064 0.936 50 H 0.133 0.867 51 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.047 -13.940 28.450 34.656 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.026 4.026 3 N -0.340 5.340 4 C 0.000 4.000 5 C 0.022 3.978 6 N -0.386 5.386 7 C -0.385 4.385 8 H 0.090 0.910 9 C -0.266 4.266 10 N -0.617 5.617 11 Si 0.807 3.193 12 H -0.199 1.199 13 H -0.217 1.217 14 H -0.207 1.207 15 C 0.294 3.706 16 O -0.459 6.459 17 C -0.159 4.159 18 C -0.047 4.047 19 H 0.082 0.918 20 C -0.201 4.201 21 C -0.115 4.115 22 C -0.090 4.090 23 C -0.224 4.224 24 C 0.064 3.936 25 O -0.254 6.254 26 C -0.076 4.076 27 C -0.182 4.182 28 C -0.103 4.103 29 H 0.109 0.891 30 H 0.082 0.918 31 H 0.064 0.936 32 H 0.099 0.901 33 H 0.122 0.878 34 H 0.107 0.893 35 H 0.076 0.924 36 H 0.017 0.983 37 H 0.046 0.954 38 H 0.207 0.793 39 H 0.062 0.938 40 H 0.128 0.872 41 H 0.139 0.861 42 H 0.069 0.931 43 H 0.087 0.913 44 H 0.071 0.929 45 H 0.162 0.838 46 H 0.167 0.833 47 H 0.084 0.916 48 H 0.133 0.867 49 H 0.082 0.918 50 H 0.151 0.849 51 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -13.543 -13.464 28.593 34.383 hybrid contribution 0.669 0.588 -1.019 1.354 sum -12.874 -12.876 27.573 33.042 Atomic orbital electron populations 1.22176 0.94339 1.03621 1.02224 1.21908 0.95618 0.80357 1.04762 1.48086 1.65419 1.15614 1.04853 1.21253 0.95542 0.97575 0.85637 1.20946 0.95068 0.95023 0.86732 1.42390 1.12036 1.61097 1.23085 1.19556 0.90360 1.25834 1.02709 0.90963 1.25635 1.01795 1.00321 0.98826 1.69813 1.33682 1.38315 1.19898 0.85145 0.79095 0.77784 0.77313 1.19923 1.21683 1.20675 1.21421 0.76211 0.86409 0.86542 1.90689 1.47114 1.20205 1.87856 1.21825 1.05711 0.99349 0.88989 1.19709 1.00566 0.94224 0.90152 0.91781 1.21897 0.98915 0.97523 1.01808 1.19726 0.94279 1.01066 0.96432 1.20997 0.97187 0.95034 0.95814 1.21454 0.98942 1.05491 0.96482 1.19240 0.94810 0.93499 0.86089 1.86044 1.35930 1.67706 1.35692 1.23322 0.82492 0.98614 1.03141 1.20568 0.96601 1.02422 0.98632 1.21054 0.98978 0.97206 0.93012 0.89092 0.91829 0.93550 0.90117 0.87762 0.89259 0.92350 0.98316 0.95412 0.79291 0.93784 0.87154 0.86082 0.93095 0.91339 0.92947 0.83810 0.83322 0.91582 0.86658 0.91768 0.84942 0.85004 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.22 10.24 71.98 0.74 -1.48 16 2 C 0.10 1.64 5.93 86.38 0.51 2.16 16 3 N -0.61 -16.31 2.47 -821.81 -2.03 -18.34 16 4 C 0.12 4.36 5.52 86.38 0.48 4.84 16 5 C 0.15 6.56 6.58 86.38 0.57 7.13 16 6 N -0.74 -40.25 5.60 -343.45 -1.92 -42.17 16 7 C -0.25 -14.88 9.99 84.03 0.84 -14.04 16 8 H 0.07 4.10 7.83 -2.91 -0.02 4.08 16 9 C -0.07 -4.35 5.50 84.86 0.47 -3.89 16 10 N -0.97 -60.63 13.06 21.65 0.28 -60.35 16 11 Si 0.98 47.35 29.55 68.60 2.03 49.38 16 12 H -0.27 -12.57 7.11 99.48 0.71 -11.87 16 13 H -0.29 -13.98 7.11 99.48 0.71 -13.27 16 14 H -0.28 -13.24 7.11 99.48 0.71 -12.53 16 15 C 0.50 14.26 7.39 87.66 0.65 14.91 16 16 O -0.58 -22.16 13.54 -3.02 -0.04 -22.20 16 17 C -0.12 -2.16 3.47 29.85 0.10 -2.06 16 18 C -0.03 -0.56 2.21 -11.54 -0.03 -0.58 16 19 H 0.06 1.59 7.69 -2.39 -0.02 1.57 16 20 C -0.14 -3.09 8.74 71.98 0.63 -2.46 16 21 C -0.11 -1.98 4.78 -19.85 -0.09 -2.07 16 22 C -0.07 -1.00 8.75 22.25 0.19 -0.81 16 23 C -0.21 -2.78 9.04 22.36 0.20 -2.58 16 24 C 0.11 1.85 6.69 22.51 0.15 2.00 16 25 O -0.34 -5.48 10.50 -92.42 -0.97 -6.45 16 26 C 0.02 0.14 9.81 113.37 1.11 1.25 16 27 C -0.16 -2.93 9.99 22.37 0.22 -2.71 16 28 C -0.08 -1.52 9.66 22.25 0.22 -1.31 16 29 H 0.09 0.81 8.14 -2.39 -0.02 0.79 16 30 H 0.06 0.76 7.22 -2.38 -0.02 0.74 16 31 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 32 H 0.08 1.47 8.07 -2.38 -0.02 1.45 16 33 H 0.10 1.26 6.44 -2.39 -0.02 1.24 16 34 H 0.09 2.86 8.07 -2.39 -0.02 2.85 16 35 H 0.06 2.36 7.42 -2.38 -0.02 2.34 16 36 H 0.00 -0.06 8.14 -2.39 -0.02 -0.08 16 37 H 0.03 1.16 8.14 -2.39 -0.02 1.14 16 38 H 0.38 21.26 7.67 -92.71 -0.71 20.55 16 39 H 0.25 15.32 8.31 -92.71 -0.77 14.55 16 40 H 0.11 1.66 7.40 -2.39 -0.02 1.64 16 41 H 0.12 1.49 6.63 -2.39 -0.02 1.47 16 42 H 0.05 1.42 5.95 -2.39 -0.01 1.41 16 43 H 0.07 1.14 7.37 -2.39 -0.02 1.12 16 44 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 45 H 0.14 1.37 7.15 -2.91 -0.02 1.35 16 46 H 0.15 1.25 6.30 -2.91 -0.02 1.23 16 47 H 0.07 0.35 7.66 -2.39 -0.02 0.34 16 48 H 0.12 0.44 8.14 -2.39 -0.02 0.42 16 49 H 0.06 0.36 7.66 -2.39 -0.02 0.34 16 50 H 0.13 2.14 8.06 -2.91 -0.02 2.11 16 51 H 0.13 2.20 7.94 -2.91 -0.02 2.18 16 Total: -1.00 -77.33 410.05 4.51 -72.83 By element: Atomic # 1 Polarization: 28.81 SS G_CDS: 0.20 Total: 29.01 kcal Atomic # 6 Polarization: -8.67 SS G_CDS: 6.96 Total: -1.71 kcal Atomic # 7 Polarization: -117.18 SS G_CDS: -3.67 Total: -120.86 kcal Atomic # 8 Polarization: -27.64 SS G_CDS: -1.01 Total: -28.65 kcal Atomic # 14 Polarization: 47.35 SS G_CDS: 2.03 Total: 49.38 kcal Total: -77.33 4.51 -72.83 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001482970039.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.896 kcal (2) G-P(sol) polarization free energy of solvation -77.334 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.437 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.508 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.826 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.929 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds