Wall clock time and date at job start Tue Mar 31 2020 18:51:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46493 * 109.47637 * 2 1 4 4 C 1.46494 * 120.00444 * 269.72749 * 3 2 1 5 5 C 1.53002 * 109.47325 * 270.27624 * 4 3 2 6 6 N 1.46499 * 109.46936 * 179.97438 * 5 4 3 7 7 C 1.36938 * 119.99478 * 179.97438 * 6 5 4 8 8 H 1.07997 * 120.00412 * 0.02562 * 7 6 5 9 9 C 1.38817 * 119.99950 * 179.97438 * 7 6 5 10 10 N 1.31620 * 119.99878 * 0.02562 * 9 7 6 11 11 Si 1.86797 * 120.00151 * 179.97438 * 9 7 6 12 12 H 1.48503 * 109.47041 * 0.02562 * 11 9 7 13 13 H 1.48499 * 109.46971 * 120.00102 * 11 9 7 14 14 H 1.48499 * 109.47445 * 240.00461 * 11 9 7 15 15 C 1.34784 * 119.99864 * 90.00039 * 3 2 1 16 16 O 1.21279 * 119.99925 * 179.72608 * 15 3 2 17 17 C 1.50700 * 119.99961 * 359.72839 * 15 3 2 18 18 C 1.52992 * 109.47257 * 180.02562 * 17 15 3 19 19 H 1.09006 * 109.47047 * 54.99685 * 18 17 15 20 20 C 1.53005 * 109.47259 * 294.99935 * 18 17 15 21 21 C 1.50699 * 109.47279 * 174.99909 * 18 17 15 22 22 C 1.38291 * 119.97293 * 59.99882 * 21 18 17 23 23 C 1.38246 * 120.11067 * 179.97438 * 22 21 18 24 24 C 1.38163 * 120.05717 * 0.02562 * 23 22 21 25 25 C 1.38713 * 119.94232 * 0.02562 * 24 23 22 26 26 O 1.35907 * 120.05239 * 180.02562 * 25 24 23 27 27 C 1.42903 * 116.99683 * 359.97438 * 26 25 24 28 28 C 1.38125 * 119.97292 * 239.72557 * 21 18 17 29 29 H 1.09002 * 109.46747 * 300.00171 * 1 2 3 30 30 H 1.08996 * 109.47074 * 59.99445 * 1 2 3 31 31 H 1.08994 * 109.47425 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.46747 * 239.99829 * 2 1 3 33 33 H 1.08996 * 109.47074 * 120.00555 * 2 1 3 34 34 H 1.09003 * 109.47006 * 30.27410 * 4 3 2 35 35 H 1.09004 * 109.47665 * 150.27102 * 4 3 2 36 36 H 1.08998 * 109.46465 * 299.99693 * 5 4 3 37 37 H 1.08993 * 109.47021 * 59.99589 * 5 4 3 38 38 H 0.96994 * 120.00305 * 0.02562 * 6 5 4 39 39 H 0.96996 * 119.99938 * 180.02562 * 10 9 7 40 40 H 1.09004 * 109.46932 * 300.00223 * 17 15 3 41 41 H 1.08997 * 109.47392 * 59.99562 * 17 15 3 42 42 H 1.08999 * 109.46411 * 59.99516 * 20 18 17 43 43 H 1.08998 * 109.47030 * 179.97438 * 20 18 17 44 44 H 1.09000 * 109.46372 * 300.00330 * 20 18 17 45 45 H 1.07996 * 119.94276 * 359.97438 * 22 21 18 46 46 H 1.07996 * 119.96518 * 180.02562 * 23 22 21 47 47 H 1.07998 * 120.02730 * 180.02562 * 24 23 22 48 48 H 1.09003 * 109.46476 * 180.02562 * 27 26 25 49 49 H 1.08998 * 109.47148 * 300.00095 * 27 26 25 50 50 H 1.08998 * 109.47246 * 60.00519 * 27 26 25 51 51 H 1.07998 * 120.02583 * 359.97438 * 28 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.2684 2.0697 -1.2686 5 6 3.7133 1.8229 -1.7069 6 7 3.9630 2.5111 -2.9759 7 6 5.1964 2.4332 -3.5658 8 1 5.9848 1.8641 -3.0958 9 6 5.4329 3.0848 -4.7685 10 7 4.4719 3.7779 -5.3415 11 14 7.1155 2.9792 -5.5729 12 1 8.0139 2.1461 -4.7337 13 1 6.9834 2.3636 -6.9178 14 1 7.6867 4.3434 -5.7067 15 6 2.2431 2.0164 1.1673 16 8 2.6522 3.1581 1.1673 17 6 1.9861 1.3081 2.4724 18 6 2.3182 2.2451 3.6353 19 1 1.7564 3.1728 3.5262 20 6 3.8169 2.5530 3.6302 21 6 1.9459 1.5824 4.9365 22 6 2.5348 0.3834 5.2944 23 6 2.1957 -0.2268 6.4877 24 6 1.2670 0.3599 7.3256 25 6 0.6741 1.5620 6.9683 26 8 -0.2394 2.1414 7.7911 27 6 -0.5423 1.4568 9.0084 28 6 1.0210 2.1758 5.7733 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3634 -1.0276 -0.0005 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8899 34 1 1.5876 1.6880 -2.0295 35 1 2.1056 3.1398 -1.1395 36 1 4.3940 2.2047 -0.9460 37 1 3.8760 0.7529 -1.8361 38 1 3.2550 3.0225 -3.3978 39 1 4.6370 4.2329 -6.1821 40 1 0.9367 1.0183 2.5279 41 1 2.6123 0.4180 2.5322 42 1 4.0861 3.0323 2.6890 43 1 4.0534 3.2209 4.4585 44 1 4.3786 1.6252 3.7392 45 1 3.2607 -0.0770 4.6407 46 1 2.6574 -1.1629 6.7651 47 1 1.0028 -0.1170 8.2579 48 1 -1.2839 2.0251 9.5698 49 1 -0.9395 0.4679 8.7799 50 1 0.3651 1.3554 9.6036 51 1 0.5650 3.1145 5.4956 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001482971164.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:51:22 Heat of formation + Delta-G solvation = -45.094078 kcal Electronic energy + Delta-G solvation = -28517.967708 eV Core-core repulsion = 24610.817554 eV Total energy + Delta-G solvation = -3907.150155 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 1.36 seconds Orbital eigenvalues (eV) -40.62485 -39.93314 -38.16799 -36.29971 -34.82298 -34.49677 -31.79687 -31.12440 -30.27194 -29.73867 -28.51841 -27.66561 -26.83628 -23.98578 -23.55766 -23.02413 -22.86872 -21.51113 -20.36323 -18.73649 -18.01050 -17.15252 -16.97627 -16.57311 -16.34128 -16.09061 -15.91504 -15.24922 -14.95693 -14.55355 -14.16617 -13.91666 -13.86569 -13.74470 -13.57748 -13.40986 -13.12468 -13.10197 -12.91595 -12.69148 -12.64821 -12.34929 -12.05437 -11.93599 -11.58524 -11.46491 -11.27330 -11.23194 -11.14558 -10.95121 -10.93664 -10.83506 -10.78410 -10.63379 -10.04908 -9.74119 -9.48724 -9.08707 -8.84706 -8.47902 -8.45812 -6.89752 -5.73397 -3.02326 1.03274 1.17568 2.80096 2.90249 3.12195 3.45998 3.48419 3.51557 3.53916 4.34323 4.46500 4.63625 4.65376 4.66678 4.73548 4.75232 4.83062 4.87399 4.96664 5.05063 5.07409 5.11534 5.17199 5.27463 5.34763 5.38143 5.54542 5.56162 5.61451 5.64925 5.69651 5.70330 5.76206 5.87515 5.93473 6.00430 6.06258 6.08217 6.10920 6.16108 6.19465 6.38010 6.40700 6.53238 6.63691 6.79108 6.96608 7.07709 7.58344 7.73601 8.37495 8.45440 9.56126 10.12919 10.47881 11.49616 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.022256 B = 0.001992 C = 0.001933 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1257.793399 B =14054.815842 C =14480.309000 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.103 3.897 3 N -0.608 5.608 4 C 0.108 3.892 5 C 0.144 3.856 6 N -0.730 5.730 7 C -0.236 4.236 8 H 0.070 0.930 9 C -0.015 4.015 10 N -0.933 5.933 11 Si 0.908 3.092 12 H -0.280 1.280 13 H -0.292 1.292 14 H -0.291 1.291 15 C 0.511 3.489 16 O -0.530 6.530 17 C -0.131 4.131 18 C -0.037 4.037 19 H 0.088 0.912 20 C -0.150 4.150 21 C -0.032 4.032 22 C -0.151 4.151 23 C -0.079 4.079 24 C -0.215 4.215 25 C 0.127 3.873 26 O -0.319 6.319 27 C 0.028 3.972 28 C -0.147 4.147 29 H 0.055 0.945 30 H 0.061 0.939 31 H 0.065 0.935 32 H 0.083 0.917 33 H 0.076 0.924 34 H 0.075 0.925 35 H 0.084 0.916 36 H 0.022 0.978 37 H 0.017 0.983 38 H 0.384 0.616 39 H 0.254 0.746 40 H 0.092 0.908 41 H 0.093 0.907 42 H 0.084 0.916 43 H 0.053 0.947 44 H 0.051 0.949 45 H 0.124 0.876 46 H 0.124 0.876 47 H 0.125 0.875 48 H 0.099 0.901 49 H 0.055 0.945 50 H 0.054 0.946 51 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.957 -11.343 28.134 32.606 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.021 4.021 3 N -0.342 5.342 4 C -0.015 4.015 5 C 0.015 3.985 6 N -0.375 5.375 7 C -0.368 4.368 8 H 0.088 0.912 9 C -0.211 4.211 10 N -0.582 5.582 11 Si 0.739 3.261 12 H -0.206 1.206 13 H -0.219 1.219 14 H -0.218 1.218 15 C 0.299 3.701 16 O -0.406 6.406 17 C -0.171 4.171 18 C -0.055 4.055 19 H 0.107 0.893 20 C -0.207 4.207 21 C -0.033 4.033 22 C -0.169 4.169 23 C -0.097 4.097 24 C -0.234 4.234 25 C 0.082 3.918 26 O -0.232 6.232 27 C -0.067 4.067 28 C -0.166 4.166 29 H 0.074 0.926 30 H 0.080 0.920 31 H 0.084 0.916 32 H 0.102 0.898 33 H 0.095 0.905 34 H 0.093 0.907 35 H 0.102 0.898 36 H 0.040 0.960 37 H 0.034 0.966 38 H 0.217 0.783 39 H 0.064 0.936 40 H 0.111 0.889 41 H 0.112 0.888 42 H 0.103 0.897 43 H 0.072 0.928 44 H 0.070 0.930 45 H 0.142 0.858 46 H 0.142 0.858 47 H 0.143 0.857 48 H 0.117 0.883 49 H 0.073 0.927 50 H 0.073 0.927 51 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -11.673 -10.597 28.081 32.204 hybrid contribution 0.639 -0.293 -0.430 0.824 sum -11.034 -10.890 27.651 31.700 Atomic orbital electron populations 1.22218 0.95991 1.02149 1.02617 1.21578 0.94295 0.82750 1.03450 1.47971 1.65610 1.14238 1.06336 1.21678 0.97964 0.98441 0.83396 1.20900 0.92836 0.95403 0.89346 1.42221 1.12962 1.60691 1.21643 1.19256 0.89347 1.25895 1.02279 0.91162 1.24751 0.97855 1.00399 0.98076 1.69672 1.31638 1.37468 1.19417 0.86094 0.83644 0.77224 0.79104 1.20574 1.21875 1.21823 1.20562 0.77463 0.86806 0.85236 1.90702 1.44778 1.17997 1.87117 1.21788 1.03680 0.99621 0.92011 1.19922 0.98668 0.97963 0.88995 0.89332 1.21973 0.93297 1.01557 1.03845 1.19726 0.94090 0.94158 0.95293 1.20951 1.02022 0.96253 0.97658 1.20913 0.95940 0.99141 0.93700 1.21199 1.02652 0.97248 1.02322 1.19009 0.89893 0.92072 0.90861 1.86081 1.56845 1.48964 1.31346 1.23044 1.01138 0.97974 0.84548 1.20361 1.01196 1.01848 0.93179 0.92577 0.92005 0.91570 0.89845 0.90534 0.90694 0.89754 0.95960 0.96565 0.78287 0.93565 0.88937 0.88827 0.89746 0.92752 0.93043 0.85766 0.85838 0.85740 0.88276 0.92687 0.92693 0.85163 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.47 10.24 37.16 0.38 -1.09 16 2 C 0.10 1.03 5.93 -4.05 -0.02 1.00 16 3 N -0.61 -8.45 2.47 -173.69 -0.43 -8.87 16 4 C 0.11 1.87 5.52 -4.04 -0.02 1.85 16 5 C 0.14 3.07 6.58 -4.04 -0.03 3.04 16 6 N -0.73 -19.30 5.60 -59.91 -0.34 -19.64 16 7 C -0.24 -6.86 9.99 -15.06 -0.15 -7.01 16 8 H 0.07 1.99 7.83 -52.49 -0.41 1.58 16 9 C -0.01 -0.44 5.50 -17.43 -0.10 -0.54 16 10 N -0.93 -28.84 13.06 55.49 0.72 -28.11 16 11 Si 0.91 22.93 29.55 -169.99 -5.02 17.90 16 12 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 13 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 14 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 15 C 0.51 7.36 7.39 -10.98 -0.08 7.28 16 16 O -0.53 -9.76 13.54 5.56 0.08 -9.68 16 17 C -0.13 -1.34 3.47 -27.89 -0.10 -1.44 16 18 C -0.04 -0.39 2.21 -91.77 -0.20 -0.60 16 19 H 0.09 1.05 7.69 -51.93 -0.40 0.66 16 20 C -0.15 -1.75 8.75 37.16 0.33 -1.43 16 21 C -0.03 -0.32 4.78 -104.64 -0.50 -0.82 16 22 C -0.15 -1.31 8.76 -39.56 -0.35 -1.65 16 23 C -0.08 -0.62 10.04 -39.61 -0.40 -1.02 16 24 C -0.22 -1.76 9.04 -39.43 -0.36 -2.12 16 25 C 0.13 1.24 6.69 -39.22 -0.26 0.97 16 26 O -0.32 -2.98 10.50 -19.45 -0.20 -3.19 16 27 C 0.03 0.15 9.81 101.05 0.99 1.14 16 28 C -0.15 -1.51 9.61 -39.43 -0.38 -1.89 16 29 H 0.06 0.47 7.20 -51.93 -0.37 0.10 16 30 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.08 0.86 8.07 -51.93 -0.42 0.44 16 33 H 0.08 0.60 6.44 -51.93 -0.33 0.27 16 34 H 0.07 1.21 8.07 -51.93 -0.42 0.79 16 35 H 0.08 1.63 7.42 -51.93 -0.39 1.25 16 36 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 38 H 0.38 10.53 7.67 -40.82 -0.31 10.22 16 39 H 0.25 7.56 8.31 -40.82 -0.34 7.22 16 40 H 0.09 0.81 7.17 -51.93 -0.37 0.44 16 41 H 0.09 0.80 6.82 -51.93 -0.35 0.45 16 42 H 0.08 1.24 5.95 -51.93 -0.31 0.93 16 43 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 44 H 0.05 0.53 7.39 -51.93 -0.38 0.15 16 45 H 0.12 0.93 7.16 -52.49 -0.38 0.55 16 46 H 0.12 0.70 8.06 -52.49 -0.42 0.27 16 47 H 0.12 0.75 6.30 -52.49 -0.33 0.42 16 48 H 0.10 0.34 8.14 -51.93 -0.42 -0.09 16 49 H 0.05 0.23 7.66 -51.93 -0.40 -0.17 16 50 H 0.05 0.24 7.66 -51.93 -0.40 -0.16 16 51 H 0.13 1.29 7.94 -52.49 -0.42 0.87 16 LS Contribution 410.02 15.07 6.18 6.18 Total: -1.00 -34.76 410.02 -8.75 -43.51 By element: Atomic # 1 Polarization: 14.71 SS G_CDS: -8.49 Total: 6.22 kcal Atomic # 6 Polarization: -3.08 SS G_CDS: -1.24 Total: -4.32 kcal Atomic # 7 Polarization: -56.58 SS G_CDS: -0.04 Total: -56.62 kcal Atomic # 8 Polarization: -12.74 SS G_CDS: -0.13 Total: -12.87 kcal Atomic # 14 Polarization: 22.93 SS G_CDS: -5.02 Total: 17.90 kcal Total LS contribution 6.18 Total: 6.18 kcal Total: -34.76 -8.75 -43.51 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001482971164.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.582 kcal (2) G-P(sol) polarization free energy of solvation -34.765 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.347 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.747 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.512 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.094 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.36 seconds