Wall clock time and date at job start Tue Mar 31 2020 18:51:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46493 * 109.47637 * 2 1 4 4 C 1.46494 * 120.00444 * 269.72749 * 3 2 1 5 5 C 1.53002 * 109.47325 * 270.27624 * 4 3 2 6 6 N 1.46499 * 109.46936 * 179.97438 * 5 4 3 7 7 C 1.36938 * 119.99478 * 179.97438 * 6 5 4 8 8 H 1.07997 * 120.00412 * 0.02562 * 7 6 5 9 9 C 1.38817 * 119.99950 * 179.97438 * 7 6 5 10 10 N 1.31620 * 119.99878 * 0.02562 * 9 7 6 11 11 Si 1.86797 * 120.00151 * 179.97438 * 9 7 6 12 12 H 1.48503 * 109.47041 * 0.02562 * 11 9 7 13 13 H 1.48499 * 109.46971 * 120.00102 * 11 9 7 14 14 H 1.48499 * 109.47445 * 240.00461 * 11 9 7 15 15 C 1.34784 * 119.99864 * 90.00039 * 3 2 1 16 16 O 1.21279 * 119.99925 * 179.72608 * 15 3 2 17 17 C 1.50700 * 119.99961 * 359.72839 * 15 3 2 18 18 C 1.52992 * 109.47257 * 180.02562 * 17 15 3 19 19 H 1.09006 * 109.47047 * 54.99685 * 18 17 15 20 20 C 1.53005 * 109.47259 * 294.99935 * 18 17 15 21 21 C 1.50699 * 109.47279 * 174.99909 * 18 17 15 22 22 C 1.38291 * 119.97293 * 59.99882 * 21 18 17 23 23 C 1.38246 * 120.11067 * 179.97438 * 22 21 18 24 24 C 1.38163 * 120.05717 * 0.02562 * 23 22 21 25 25 C 1.38713 * 119.94232 * 0.02562 * 24 23 22 26 26 O 1.35907 * 120.05239 * 180.02562 * 25 24 23 27 27 C 1.42903 * 116.99683 * 359.97438 * 26 25 24 28 28 C 1.38125 * 119.97292 * 239.72557 * 21 18 17 29 29 H 1.09002 * 109.46747 * 300.00171 * 1 2 3 30 30 H 1.08996 * 109.47074 * 59.99445 * 1 2 3 31 31 H 1.08994 * 109.47425 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.46747 * 239.99829 * 2 1 3 33 33 H 1.08996 * 109.47074 * 120.00555 * 2 1 3 34 34 H 1.09003 * 109.47006 * 30.27410 * 4 3 2 35 35 H 1.09004 * 109.47665 * 150.27102 * 4 3 2 36 36 H 1.08998 * 109.46465 * 299.99693 * 5 4 3 37 37 H 1.08993 * 109.47021 * 59.99589 * 5 4 3 38 38 H 0.96994 * 120.00305 * 0.02562 * 6 5 4 39 39 H 0.96996 * 119.99938 * 180.02562 * 10 9 7 40 40 H 1.09004 * 109.46932 * 300.00223 * 17 15 3 41 41 H 1.08997 * 109.47392 * 59.99562 * 17 15 3 42 42 H 1.08999 * 109.46411 * 59.99516 * 20 18 17 43 43 H 1.08998 * 109.47030 * 179.97438 * 20 18 17 44 44 H 1.09000 * 109.46372 * 300.00330 * 20 18 17 45 45 H 1.07996 * 119.94276 * 359.97438 * 22 21 18 46 46 H 1.07996 * 119.96518 * 180.02562 * 23 22 21 47 47 H 1.07998 * 120.02730 * 180.02562 * 24 23 22 48 48 H 1.09003 * 109.46476 * 180.02562 * 27 26 25 49 49 H 1.08998 * 109.47148 * 300.00095 * 27 26 25 50 50 H 1.08998 * 109.47246 * 60.00519 * 27 26 25 51 51 H 1.07998 * 120.02583 * 359.97438 * 28 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.2684 2.0697 -1.2686 5 6 3.7133 1.8229 -1.7069 6 7 3.9630 2.5111 -2.9759 7 6 5.1964 2.4332 -3.5658 8 1 5.9848 1.8641 -3.0958 9 6 5.4329 3.0848 -4.7685 10 7 4.4719 3.7779 -5.3415 11 14 7.1155 2.9792 -5.5729 12 1 8.0139 2.1461 -4.7337 13 1 6.9834 2.3636 -6.9178 14 1 7.6867 4.3434 -5.7067 15 6 2.2431 2.0164 1.1673 16 8 2.6522 3.1581 1.1673 17 6 1.9861 1.3081 2.4724 18 6 2.3182 2.2451 3.6353 19 1 1.7564 3.1728 3.5262 20 6 3.8169 2.5530 3.6302 21 6 1.9459 1.5824 4.9365 22 6 2.5348 0.3834 5.2944 23 6 2.1957 -0.2268 6.4877 24 6 1.2670 0.3599 7.3256 25 6 0.6741 1.5620 6.9683 26 8 -0.2394 2.1414 7.7911 27 6 -0.5423 1.4568 9.0084 28 6 1.0210 2.1758 5.7733 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3634 -1.0276 -0.0005 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8899 34 1 1.5876 1.6880 -2.0295 35 1 2.1056 3.1398 -1.1395 36 1 4.3940 2.2047 -0.9460 37 1 3.8760 0.7529 -1.8361 38 1 3.2550 3.0225 -3.3978 39 1 4.6370 4.2329 -6.1821 40 1 0.9367 1.0183 2.5279 41 1 2.6123 0.4180 2.5322 42 1 4.0861 3.0323 2.6890 43 1 4.0534 3.2209 4.4585 44 1 4.3786 1.6252 3.7392 45 1 3.2607 -0.0770 4.6407 46 1 2.6574 -1.1629 6.7651 47 1 1.0028 -0.1170 8.2579 48 1 -1.2839 2.0251 9.5698 49 1 -0.9395 0.4679 8.7799 50 1 0.3651 1.3554 9.6036 51 1 0.5650 3.1145 5.4956 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001482971164.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:51:21 Heat of formation + Delta-G solvation = -66.130780 kcal Electronic energy + Delta-G solvation = -28518.879928 eV Core-core repulsion = 24610.817554 eV Total energy + Delta-G solvation = -3908.062374 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.43726 -40.87374 -38.88268 -37.57167 -36.35732 -35.62204 -33.61556 -31.80429 -31.53179 -30.55042 -29.66674 -28.21045 -28.12480 -25.68879 -24.46125 -24.10142 -23.51888 -23.09447 -21.19078 -19.89764 -19.15726 -18.69860 -17.94676 -17.49073 -17.12559 -16.85915 -16.63016 -16.51221 -16.36250 -15.76109 -15.43195 -15.21720 -15.04879 -14.73941 -14.66663 -14.48565 -14.37367 -14.16468 -13.90700 -13.64031 -13.33312 -13.09058 -12.99957 -12.94131 -12.82313 -12.74866 -12.61717 -12.39079 -12.27211 -12.15761 -12.09507 -12.00893 -11.87088 -11.80584 -11.65592 -11.58564 -10.99809 -10.68005 -9.76876 -9.67504 -9.11630 -9.07187 -7.98684 -5.29435 0.37293 0.52677 1.45398 1.47541 1.57514 1.67888 1.98663 2.39597 2.55251 2.82253 3.34607 3.47200 3.80572 3.90397 3.94781 4.00709 4.08650 4.15395 4.19979 4.22850 4.27595 4.31398 4.40672 4.41671 4.45535 4.49238 4.55826 4.58440 4.61476 4.67335 4.68699 4.74981 4.86664 4.91237 4.96573 5.05898 5.08288 5.09836 5.13001 5.20941 5.35867 5.39844 5.41619 5.43634 5.55681 5.61728 5.71533 5.87900 6.22911 6.48344 6.49236 7.24990 7.28882 8.01017 8.26116 9.24911 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.022256 B = 0.001992 C = 0.001933 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1257.793399 B =14054.815842 C =14480.309000 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.096 3.904 3 N -0.607 5.607 4 C 0.123 3.877 5 C 0.151 3.849 6 N -0.744 5.744 7 C -0.249 4.249 8 H 0.074 0.926 9 C -0.075 4.075 10 N -0.968 5.968 11 Si 0.978 3.022 12 H -0.266 1.266 13 H -0.287 1.287 14 H -0.293 1.293 15 C 0.504 3.496 16 O -0.579 6.579 17 C -0.118 4.118 18 C -0.031 4.031 19 H 0.066 0.934 20 C -0.145 4.145 21 C -0.037 4.037 22 C -0.154 4.154 23 C -0.077 4.077 24 C -0.215 4.215 25 C 0.114 3.886 26 O -0.342 6.342 27 C 0.019 3.981 28 C -0.169 4.169 29 H 0.058 0.942 30 H 0.045 0.955 31 H 0.091 0.909 32 H 0.083 0.917 33 H 0.107 0.893 34 H 0.089 0.911 35 H 0.057 0.943 36 H 0.001 0.999 37 H 0.030 0.970 38 H 0.375 0.625 39 H 0.253 0.747 40 H 0.114 0.886 41 H 0.121 0.879 42 H 0.050 0.950 43 H 0.052 0.948 44 H 0.068 0.932 45 H 0.140 0.860 46 H 0.152 0.848 47 H 0.147 0.853 48 H 0.114 0.886 49 H 0.066 0.934 50 H 0.064 0.936 51 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.853 -14.572 29.954 35.357 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.026 4.026 3 N -0.339 5.339 4 C -0.001 4.001 5 C 0.023 3.977 6 N -0.387 5.387 7 C -0.381 4.381 8 H 0.092 0.908 9 C -0.267 4.267 10 N -0.618 5.618 11 Si 0.807 3.193 12 H -0.191 1.191 13 H -0.214 1.214 14 H -0.220 1.220 15 C 0.294 3.706 16 O -0.459 6.459 17 C -0.158 4.158 18 C -0.050 4.050 19 H 0.085 0.915 20 C -0.202 4.202 21 C -0.037 4.037 22 C -0.172 4.172 23 C -0.094 4.094 24 C -0.233 4.233 25 C 0.069 3.931 26 O -0.257 6.257 27 C -0.075 4.075 28 C -0.187 4.187 29 H 0.077 0.923 30 H 0.064 0.936 31 H 0.110 0.890 32 H 0.101 0.899 33 H 0.125 0.875 34 H 0.107 0.893 35 H 0.075 0.925 36 H 0.019 0.981 37 H 0.048 0.952 38 H 0.207 0.793 39 H 0.062 0.938 40 H 0.132 0.868 41 H 0.139 0.861 42 H 0.069 0.931 43 H 0.071 0.929 44 H 0.087 0.913 45 H 0.158 0.842 46 H 0.169 0.831 47 H 0.165 0.835 48 H 0.133 0.867 49 H 0.085 0.915 50 H 0.083 0.917 51 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -11.589 -13.884 29.944 34.982 hybrid contribution 0.563 0.697 -0.882 1.257 sum -11.027 -13.187 29.062 33.765 Atomic orbital electron populations 1.22179 0.94689 1.03594 1.02003 1.21914 0.95345 0.80334 1.04979 1.48076 1.65300 1.15721 1.04814 1.21263 0.95684 0.97534 0.85611 1.20942 0.94891 0.95139 0.86718 1.42417 1.12131 1.61055 1.23077 1.19639 0.90352 1.25570 1.02548 0.90810 1.25642 1.01800 1.00416 0.98853 1.69828 1.33742 1.38515 1.19760 0.85007 0.79166 0.77068 0.78090 1.19055 1.21402 1.22018 1.21380 0.76248 0.86393 0.86535 1.90692 1.46938 1.20395 1.87850 1.21794 1.05515 0.99619 0.88842 1.19780 0.97545 0.97503 0.90191 0.91536 1.21896 0.94427 1.02050 1.01860 1.19550 0.94678 0.94850 0.94600 1.21153 1.02006 0.95649 0.98370 1.21262 0.95318 0.99873 0.92991 1.21501 1.02118 0.96506 1.03194 1.19162 0.90355 0.92766 0.90848 1.86050 1.56848 1.50133 1.32630 1.23320 1.02142 0.98677 0.83347 1.20422 1.02122 1.02000 0.94199 0.92296 0.93577 0.89028 0.89853 0.87482 0.89300 0.92481 0.98138 0.95225 0.79344 0.93820 0.86752 0.86097 0.93144 0.92859 0.91276 0.84207 0.83063 0.83513 0.86745 0.91504 0.91707 0.86269 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.43 10.24 71.98 0.74 -1.70 16 2 C 0.10 1.67 5.93 86.38 0.51 2.19 16 3 N -0.61 -16.48 2.47 -821.82 -2.03 -18.52 16 4 C 0.12 4.36 5.52 86.38 0.48 4.84 16 5 C 0.15 6.55 6.58 86.38 0.57 7.12 16 6 N -0.74 -40.21 5.60 -343.46 -1.92 -42.14 16 7 C -0.25 -14.62 9.99 84.03 0.84 -13.78 16 8 H 0.07 4.18 7.83 -2.91 -0.02 4.15 16 9 C -0.07 -4.44 5.50 84.86 0.47 -3.97 16 10 N -0.97 -60.85 13.06 21.65 0.28 -60.56 16 11 Si 0.98 47.34 29.55 68.60 2.03 49.37 16 12 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 13 H -0.29 -13.62 7.11 99.48 0.71 -12.91 16 14 H -0.29 -14.19 7.11 99.48 0.71 -13.48 16 15 C 0.50 14.54 7.39 87.66 0.65 15.18 16 16 O -0.58 -22.52 13.54 -3.03 -0.04 -22.56 16 17 C -0.12 -2.23 3.47 29.85 0.10 -2.12 16 18 C -0.03 -0.67 2.21 -11.54 -0.03 -0.69 16 19 H 0.07 1.70 7.69 -2.38 -0.02 1.68 16 20 C -0.15 -3.44 8.75 71.98 0.63 -2.81 16 21 C -0.04 -0.68 4.78 -19.88 -0.10 -0.77 16 22 C -0.15 -2.23 8.76 22.28 0.20 -2.03 16 23 C -0.08 -0.94 10.04 22.25 0.22 -0.72 16 24 C -0.21 -2.95 9.04 22.37 0.20 -2.74 16 25 C 0.11 2.10 6.69 22.51 0.15 2.25 16 26 O -0.34 -6.17 10.50 -92.50 -0.97 -7.14 16 27 C 0.02 0.17 9.81 113.37 1.11 1.28 16 28 C -0.17 -3.45 9.61 22.37 0.21 -3.23 16 29 H 0.06 0.84 7.20 -2.39 -0.02 0.82 16 30 H 0.05 0.82 8.14 -2.39 -0.02 0.81 16 31 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 32 H 0.08 1.50 8.07 -2.39 -0.02 1.48 16 33 H 0.11 1.25 6.44 -2.39 -0.02 1.23 16 34 H 0.09 2.88 8.07 -2.39 -0.02 2.86 16 35 H 0.06 2.34 7.42 -2.38 -0.02 2.32 16 36 H 0.00 0.03 8.14 -2.39 -0.02 0.01 16 37 H 0.03 1.22 8.14 -2.39 -0.02 1.20 16 38 H 0.37 21.28 7.67 -92.71 -0.71 20.57 16 39 H 0.25 15.27 8.31 -92.71 -0.77 14.50 16 40 H 0.11 1.70 7.17 -2.38 -0.02 1.68 16 41 H 0.12 1.64 6.82 -2.39 -0.02 1.63 16 42 H 0.05 1.56 5.95 -2.39 -0.01 1.54 16 43 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 44 H 0.07 1.34 7.39 -2.39 -0.02 1.33 16 45 H 0.14 1.55 7.16 -2.91 -0.02 1.52 16 46 H 0.15 1.00 8.06 -2.91 -0.02 0.98 16 47 H 0.15 1.27 6.30 -2.91 -0.02 1.25 16 48 H 0.11 0.58 8.14 -2.39 -0.02 0.56 16 49 H 0.07 0.41 7.66 -2.39 -0.02 0.39 16 50 H 0.06 0.42 7.66 -2.39 -0.02 0.40 16 51 H 0.12 2.55 7.94 -2.91 -0.02 2.53 16 Total: -1.00 -78.04 410.02 4.51 -73.54 By element: Atomic # 1 Polarization: 29.52 SS G_CDS: 0.20 Total: 29.73 kcal Atomic # 6 Polarization: -8.68 SS G_CDS: 6.96 Total: -1.72 kcal Atomic # 7 Polarization: -117.54 SS G_CDS: -3.67 Total: -121.22 kcal Atomic # 8 Polarization: -28.68 SS G_CDS: -1.01 Total: -29.70 kcal Atomic # 14 Polarization: 47.34 SS G_CDS: 2.03 Total: 49.37 kcal Total: -78.04 4.51 -73.54 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001482971164.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.406 kcal (2) G-P(sol) polarization free energy of solvation -78.044 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.638 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.507 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.537 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.131 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds