Wall clock time and date at job start Tue Mar 31 2020 18:51:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46500 * 109.47154 * 2 1 4 4 C 1.46497 * 119.99876 * 269.99441 * 3 2 1 5 5 C 1.52999 * 109.47348 * 270.00363 * 4 3 2 6 6 N 1.46501 * 109.47104 * 180.02562 * 5 4 3 7 7 C 1.36939 * 120.00060 * 179.97438 * 6 5 4 8 8 H 1.07997 * 119.99745 * 359.97438 * 7 6 5 9 9 C 1.38816 * 120.00152 * 179.97438 * 7 6 5 10 10 N 1.31622 * 119.99551 * 0.02562 * 9 7 6 11 11 Si 1.86792 * 119.99909 * 179.97438 * 9 7 6 12 12 H 1.48502 * 109.47380 * 0.02562 * 11 9 7 13 13 H 1.48502 * 109.47054 * 120.00255 * 11 9 7 14 14 H 1.48502 * 109.47144 * 239.99912 * 11 9 7 15 15 C 1.34776 * 120.00185 * 89.99699 * 3 2 1 16 16 O 1.21280 * 119.99923 * 179.97438 * 15 3 2 17 17 C 1.50703 * 119.99815 * 0.02562 * 15 3 2 18 18 C 1.53000 * 109.46801 * 179.97438 * 17 15 3 19 19 H 1.09002 * 109.47398 * 305.00045 * 18 17 15 20 20 C 1.53002 * 109.47233 * 65.00219 * 18 17 15 21 21 C 1.50703 * 109.46912 * 184.99967 * 18 17 15 22 22 C 1.38285 * 119.97096 * 299.72985 * 21 18 17 23 23 C 1.38243 * 120.11143 * 179.72695 * 22 21 18 24 24 C 1.38168 * 120.05593 * 0.54716 * 23 22 21 25 25 C 1.38715 * 119.94219 * 359.72618 * 24 23 22 26 26 O 1.35898 * 120.05341 * 179.97438 * 25 24 23 27 27 C 1.42892 * 117.00324 * 0.02562 * 26 25 24 28 28 C 1.38124 * 119.97314 * 120.00122 * 21 18 17 29 29 H 1.08993 * 109.47330 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47312 * 300.00386 * 1 2 3 31 31 H 1.09008 * 109.47024 * 60.00104 * 1 2 3 32 32 H 1.09002 * 109.47312 * 239.99614 * 2 1 3 33 33 H 1.09002 * 109.46950 * 119.99448 * 2 1 3 34 34 H 1.09000 * 109.47433 * 30.00287 * 4 3 2 35 35 H 1.09004 * 109.47370 * 149.99979 * 4 3 2 36 36 H 1.09000 * 109.47154 * 299.99431 * 5 4 3 37 37 H 1.08996 * 109.47224 * 60.00159 * 5 4 3 38 38 H 0.97006 * 120.00423 * 359.97438 * 6 5 4 39 39 H 0.97005 * 119.99012 * 180.02562 * 10 9 7 40 40 H 1.09002 * 109.47083 * 60.00009 * 17 15 3 41 41 H 1.08991 * 109.46995 * 300.00066 * 17 15 3 42 42 H 1.08996 * 109.47407 * 180.02562 * 20 18 17 43 43 H 1.09000 * 109.46986 * 299.99797 * 20 18 17 44 44 H 1.09002 * 109.47075 * 59.99068 * 20 18 17 45 45 H 1.08000 * 119.94582 * 359.97438 * 22 21 18 46 46 H 1.08005 * 119.97553 * 180.24934 * 23 22 21 47 47 H 1.07996 * 120.02871 * 179.70552 * 24 23 22 48 48 H 1.08997 * 109.47363 * 60.00111 * 27 26 25 49 49 H 1.08998 * 109.47575 * 180.02562 * 27 26 25 50 50 H 1.09005 * 109.46916 * 300.00210 * 27 26 25 51 51 H 1.07997 * 120.02516 * 0.02562 * 28 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2626 2.0717 -1.2687 5 6 3.7076 1.8313 -1.7103 6 7 3.9520 2.5223 -2.9788 7 6 5.1844 2.4503 -3.5714 8 1 5.9763 1.8843 -3.1035 9 6 5.4158 3.1046 -4.7736 10 7 4.4508 3.7948 -5.3435 11 14 7.0971 3.0069 -5.5815 12 1 8.0006 2.1761 -4.7456 13 1 6.9647 2.3928 -6.9272 14 1 7.6626 4.3735 -5.7146 15 6 2.2429 2.0166 1.1672 16 8 2.6476 3.1599 1.1671 17 6 1.9922 1.3060 2.4723 18 6 2.3241 2.2433 3.6352 19 1 3.3458 2.6077 3.5280 20 6 1.3564 3.4284 3.6272 21 6 2.1915 1.4953 4.9368 22 6 0.9756 0.9427 5.2952 23 6 0.8522 0.2511 6.4858 24 6 1.9411 0.1202 7.3261 25 6 3.1604 0.6785 6.9715 26 8 4.2328 0.5515 7.7966 27 6 4.0333 -0.1705 9.0134 28 6 3.2831 1.3672 5.7733 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3634 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8901 32 1 1.8934 -0.5139 -0.8900 33 1 1.8933 -0.5138 0.8901 34 1 1.5818 1.6877 -2.0284 35 1 2.0956 3.1410 -1.1385 36 1 4.3884 2.2155 -0.9507 37 1 3.8745 0.7621 -1.8407 38 1 3.2408 3.0310 -3.3989 39 1 4.6125 4.2517 -6.1838 40 1 2.6228 0.4188 2.5299 41 1 0.9445 1.0115 2.5302 42 1 1.5931 4.0964 4.4553 43 1 1.4523 3.9694 2.6858 44 1 0.3347 3.0640 3.7343 45 1 0.1220 1.0481 4.6420 46 1 -0.0975 -0.1830 6.7617 47 1 1.8429 -0.4161 8.2584 48 1 3.7178 -1.1884 8.7845 49 1 4.9656 -0.1969 9.5774 50 1 3.2639 0.3235 9.6070 51 1 4.2313 1.8031 5.4951 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001482971165.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:51:25 Heat of formation + Delta-G solvation = -45.013851 kcal Electronic energy + Delta-G solvation = -28517.589803 eV Core-core repulsion = 24610.443127 eV Total energy + Delta-G solvation = -3907.146676 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.62056 -39.93110 -38.16309 -36.29957 -34.82886 -34.49190 -31.79392 -31.11595 -30.27520 -29.73867 -28.53877 -27.65398 -26.84103 -23.97189 -23.60026 -22.99100 -22.87149 -21.50293 -20.37355 -18.75128 -18.00512 -17.14968 -16.94134 -16.56496 -16.29272 -16.07770 -15.92389 -15.47423 -14.74324 -14.57777 -14.14799 -13.91241 -13.85812 -13.79255 -13.55799 -13.48928 -13.13260 -13.10163 -12.89877 -12.71708 -12.54605 -12.39944 -12.12960 -11.82922 -11.62447 -11.52330 -11.29291 -11.21443 -11.07515 -10.98975 -10.90680 -10.84392 -10.81943 -10.62879 -10.04716 -9.74289 -9.48770 -9.08352 -8.84210 -8.47433 -8.45428 -6.89271 -5.73028 -3.01851 1.03607 1.17907 2.80243 2.91638 3.12304 3.46467 3.48693 3.52090 3.54494 4.34209 4.46756 4.63564 4.64938 4.67617 4.74876 4.75591 4.84390 4.88586 4.93682 5.05725 5.07601 5.12206 5.17428 5.29353 5.29926 5.39425 5.51901 5.55795 5.60379 5.65351 5.68454 5.70306 5.75879 5.87262 5.91203 6.01074 6.04725 6.07664 6.10310 6.15250 6.19201 6.33411 6.39746 6.53001 6.63649 6.79631 6.97257 7.09043 7.58341 7.74237 8.37503 8.45894 9.56568 10.13290 10.48289 11.50001 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.015548 B = 0.002123 C = 0.001982 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1800.470962 B =13185.984305 C =14127.013378 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.102 3.898 3 N -0.608 5.608 4 C 0.108 3.892 5 C 0.143 3.857 6 N -0.730 5.730 7 C -0.236 4.236 8 H 0.070 0.930 9 C -0.016 4.016 10 N -0.933 5.933 11 Si 0.908 3.092 12 H -0.280 1.280 13 H -0.292 1.292 14 H -0.291 1.291 15 C 0.511 3.489 16 O -0.530 6.530 17 C -0.131 4.131 18 C -0.038 4.038 19 H 0.090 0.910 20 C -0.148 4.148 21 C -0.033 4.033 22 C -0.151 4.151 23 C -0.079 4.079 24 C -0.216 4.216 25 C 0.127 3.873 26 O -0.318 6.318 27 C 0.028 3.972 28 C -0.147 4.147 29 H 0.065 0.935 30 H 0.055 0.945 31 H 0.061 0.939 32 H 0.083 0.917 33 H 0.077 0.923 34 H 0.075 0.925 35 H 0.084 0.916 36 H 0.023 0.977 37 H 0.017 0.983 38 H 0.384 0.616 39 H 0.254 0.746 40 H 0.093 0.907 41 H 0.093 0.907 42 H 0.054 0.946 43 H 0.082 0.918 44 H 0.049 0.951 45 H 0.123 0.877 46 H 0.123 0.877 47 H 0.125 0.875 48 H 0.055 0.945 49 H 0.099 0.901 50 H 0.054 0.946 51 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.305 -11.603 28.174 32.499 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.021 4.021 3 N -0.342 5.342 4 C -0.014 4.014 5 C 0.015 3.985 6 N -0.375 5.375 7 C -0.367 4.367 8 H 0.088 0.912 9 C -0.211 4.211 10 N -0.582 5.582 11 Si 0.740 3.260 12 H -0.206 1.206 13 H -0.219 1.219 14 H -0.218 1.218 15 C 0.299 3.701 16 O -0.406 6.406 17 C -0.171 4.171 18 C -0.057 4.057 19 H 0.108 0.892 20 C -0.205 4.205 21 C -0.033 4.033 22 C -0.169 4.169 23 C -0.097 4.097 24 C -0.234 4.234 25 C 0.082 3.918 26 O -0.232 6.232 27 C -0.067 4.067 28 C -0.165 4.165 29 H 0.084 0.916 30 H 0.074 0.926 31 H 0.080 0.920 32 H 0.102 0.898 33 H 0.095 0.905 34 H 0.093 0.907 35 H 0.102 0.898 36 H 0.041 0.959 37 H 0.035 0.965 38 H 0.217 0.783 39 H 0.064 0.936 40 H 0.111 0.889 41 H 0.111 0.889 42 H 0.073 0.927 43 H 0.101 0.899 44 H 0.068 0.932 45 H 0.141 0.859 46 H 0.141 0.859 47 H 0.143 0.857 48 H 0.073 0.927 49 H 0.117 0.883 50 H 0.073 0.927 51 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -10.714 -10.965 28.121 32.028 hybrid contribution 0.475 -0.235 -0.434 0.685 sum -10.239 -11.200 27.687 31.573 Atomic orbital electron populations 1.22217 0.95992 1.02138 1.02580 1.21585 0.94280 0.82762 1.03502 1.47970 1.65676 1.14172 1.06336 1.21673 0.97997 0.98392 0.83383 1.20904 0.92873 0.95403 0.89347 1.42224 1.12853 1.60749 1.21691 1.19258 0.89287 1.25909 1.02260 0.91166 1.24755 0.97864 1.00420 0.98102 1.69678 1.31504 1.37519 1.19524 0.86088 0.83618 0.77226 0.79104 1.20567 1.21883 1.21818 1.20561 0.77448 0.86820 0.85236 1.90703 1.44935 1.17838 1.87118 1.21786 1.03738 0.99561 0.92000 1.19928 1.02349 0.94359 0.89020 0.89192 1.21956 0.97555 0.97267 1.03737 1.19716 0.92551 0.95738 0.95271 1.20922 0.97487 1.00831 0.97692 1.20904 0.97876 0.97230 0.93740 1.21200 0.93262 1.06648 1.02317 1.19014 0.86244 0.95698 0.90805 1.86085 1.33983 1.71829 1.31271 1.23044 1.03467 0.95642 0.84549 1.20387 1.00020 1.03085 0.93044 0.91567 0.92606 0.92005 0.89844 0.90500 0.90693 0.89761 0.95944 0.96549 0.78292 0.93575 0.88871 0.88883 0.92738 0.89904 0.93160 0.85862 0.85877 0.85737 0.92676 0.88252 0.92721 0.85076 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.42 10.24 37.16 0.38 -1.04 16 2 C 0.10 1.02 5.93 -4.04 -0.02 1.00 16 3 N -0.61 -8.45 2.47 -173.69 -0.43 -8.88 16 4 C 0.11 1.87 5.52 -4.04 -0.02 1.85 16 5 C 0.14 3.08 6.58 -4.04 -0.03 3.06 16 6 N -0.73 -19.38 5.60 -59.91 -0.34 -19.72 16 7 C -0.24 -6.88 9.99 -15.06 -0.15 -7.03 16 8 H 0.07 2.00 7.83 -52.49 -0.41 1.59 16 9 C -0.02 -0.46 5.50 -17.43 -0.10 -0.56 16 10 N -0.93 -28.91 13.06 55.49 0.72 -28.18 16 11 Si 0.91 23.03 29.55 -169.99 -5.02 18.00 16 12 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 13 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 14 H -0.29 -7.41 7.11 56.52 0.40 -7.01 16 15 C 0.51 7.36 7.39 -10.98 -0.08 7.28 16 16 O -0.53 -9.76 13.55 5.56 0.08 -9.69 16 17 C -0.13 -1.34 3.47 -27.88 -0.10 -1.44 16 18 C -0.04 -0.41 2.21 -91.77 -0.20 -0.61 16 19 H 0.09 1.11 7.69 -51.93 -0.40 0.71 16 20 C -0.15 -1.63 8.74 37.16 0.32 -1.30 16 21 C -0.03 -0.32 4.78 -104.64 -0.50 -0.82 16 22 C -0.15 -1.28 8.76 -39.56 -0.35 -1.63 16 23 C -0.08 -0.61 10.04 -39.61 -0.40 -1.01 16 24 C -0.22 -1.78 9.04 -39.43 -0.36 -2.13 16 25 C 0.13 1.27 6.69 -39.22 -0.26 1.01 16 26 O -0.32 -3.09 10.50 -19.42 -0.20 -3.29 16 27 C 0.03 0.15 9.81 101.05 0.99 1.15 16 28 C -0.15 -1.55 9.61 -39.43 -0.38 -1.93 16 29 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.05 0.44 7.22 -51.93 -0.38 0.06 16 31 H 0.06 0.58 8.14 -51.92 -0.42 0.16 16 32 H 0.08 0.86 8.07 -51.93 -0.42 0.44 16 33 H 0.08 0.62 6.44 -51.93 -0.33 0.28 16 34 H 0.07 1.21 8.07 -51.93 -0.42 0.79 16 35 H 0.08 1.63 7.42 -51.93 -0.39 1.24 16 36 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 38 H 0.38 10.55 7.67 -40.82 -0.31 10.24 16 39 H 0.25 7.57 8.31 -40.82 -0.34 7.23 16 40 H 0.09 0.86 7.40 -51.93 -0.38 0.47 16 41 H 0.09 0.76 6.63 -51.93 -0.34 0.42 16 42 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 43 H 0.08 1.12 5.95 -51.93 -0.31 0.81 16 44 H 0.05 0.47 7.37 -51.93 -0.38 0.09 16 45 H 0.12 0.86 7.16 -52.49 -0.38 0.49 16 46 H 0.12 0.67 8.06 -52.48 -0.42 0.24 16 47 H 0.12 0.76 6.30 -52.49 -0.33 0.43 16 48 H 0.05 0.25 7.66 -51.93 -0.40 -0.15 16 49 H 0.10 0.37 8.14 -51.93 -0.42 -0.05 16 50 H 0.05 0.24 7.66 -51.93 -0.40 -0.15 16 51 H 0.13 1.36 7.94 -52.49 -0.42 0.95 16 LS Contribution 410.06 15.07 6.18 6.18 Total: -1.00 -34.94 410.06 -8.75 -43.69 By element: Atomic # 1 Polarization: 14.53 SS G_CDS: -8.49 Total: 6.04 kcal Atomic # 6 Polarization: -2.90 SS G_CDS: -1.24 Total: -4.15 kcal Atomic # 7 Polarization: -56.74 SS G_CDS: -0.04 Total: -56.78 kcal Atomic # 8 Polarization: -12.85 SS G_CDS: -0.13 Total: -12.98 kcal Atomic # 14 Polarization: 23.03 SS G_CDS: -5.02 Total: 18.00 kcal Total LS contribution 6.18 Total: 6.18 kcal Total: -34.94 -8.75 -43.69 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001482971165.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.328 kcal (2) G-P(sol) polarization free energy of solvation -34.938 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.266 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.748 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.685 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.014 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds