Wall clock time and date at job start Tue Mar 31 2020 18:51:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46500 * 109.47154 * 2 1 4 4 C 1.46497 * 119.99876 * 269.99441 * 3 2 1 5 5 C 1.52999 * 109.47348 * 270.00363 * 4 3 2 6 6 N 1.46501 * 109.47104 * 180.02562 * 5 4 3 7 7 C 1.36939 * 120.00060 * 179.97438 * 6 5 4 8 8 H 1.07997 * 119.99745 * 359.97438 * 7 6 5 9 9 C 1.38816 * 120.00152 * 179.97438 * 7 6 5 10 10 N 1.31622 * 119.99551 * 0.02562 * 9 7 6 11 11 Si 1.86792 * 119.99909 * 179.97438 * 9 7 6 12 12 H 1.48502 * 109.47380 * 0.02562 * 11 9 7 13 13 H 1.48502 * 109.47054 * 120.00255 * 11 9 7 14 14 H 1.48502 * 109.47144 * 239.99912 * 11 9 7 15 15 C 1.34776 * 120.00185 * 89.99699 * 3 2 1 16 16 O 1.21280 * 119.99923 * 179.97438 * 15 3 2 17 17 C 1.50703 * 119.99815 * 0.02562 * 15 3 2 18 18 C 1.53000 * 109.46801 * 179.97438 * 17 15 3 19 19 H 1.09002 * 109.47398 * 305.00045 * 18 17 15 20 20 C 1.53002 * 109.47233 * 65.00219 * 18 17 15 21 21 C 1.50703 * 109.46912 * 184.99967 * 18 17 15 22 22 C 1.38285 * 119.97096 * 299.72985 * 21 18 17 23 23 C 1.38243 * 120.11143 * 179.72695 * 22 21 18 24 24 C 1.38168 * 120.05593 * 0.54716 * 23 22 21 25 25 C 1.38715 * 119.94219 * 359.72618 * 24 23 22 26 26 O 1.35898 * 120.05341 * 179.97438 * 25 24 23 27 27 C 1.42892 * 117.00324 * 0.02562 * 26 25 24 28 28 C 1.38124 * 119.97314 * 120.00122 * 21 18 17 29 29 H 1.08993 * 109.47330 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47312 * 300.00386 * 1 2 3 31 31 H 1.09008 * 109.47024 * 60.00104 * 1 2 3 32 32 H 1.09002 * 109.47312 * 239.99614 * 2 1 3 33 33 H 1.09002 * 109.46950 * 119.99448 * 2 1 3 34 34 H 1.09000 * 109.47433 * 30.00287 * 4 3 2 35 35 H 1.09004 * 109.47370 * 149.99979 * 4 3 2 36 36 H 1.09000 * 109.47154 * 299.99431 * 5 4 3 37 37 H 1.08996 * 109.47224 * 60.00159 * 5 4 3 38 38 H 0.97006 * 120.00423 * 359.97438 * 6 5 4 39 39 H 0.97005 * 119.99012 * 180.02562 * 10 9 7 40 40 H 1.09002 * 109.47083 * 60.00009 * 17 15 3 41 41 H 1.08991 * 109.46995 * 300.00066 * 17 15 3 42 42 H 1.08996 * 109.47407 * 180.02562 * 20 18 17 43 43 H 1.09000 * 109.46986 * 299.99797 * 20 18 17 44 44 H 1.09002 * 109.47075 * 59.99068 * 20 18 17 45 45 H 1.08000 * 119.94582 * 359.97438 * 22 21 18 46 46 H 1.08005 * 119.97553 * 180.24934 * 23 22 21 47 47 H 1.07996 * 120.02871 * 179.70552 * 24 23 22 48 48 H 1.08997 * 109.47363 * 60.00111 * 27 26 25 49 49 H 1.08998 * 109.47575 * 180.02562 * 27 26 25 50 50 H 1.09005 * 109.46916 * 300.00210 * 27 26 25 51 51 H 1.07997 * 120.02516 * 0.02562 * 28 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2626 2.0717 -1.2687 5 6 3.7076 1.8313 -1.7103 6 7 3.9520 2.5223 -2.9788 7 6 5.1844 2.4503 -3.5714 8 1 5.9763 1.8843 -3.1035 9 6 5.4158 3.1046 -4.7736 10 7 4.4508 3.7948 -5.3435 11 14 7.0971 3.0069 -5.5815 12 1 8.0006 2.1761 -4.7456 13 1 6.9647 2.3928 -6.9272 14 1 7.6626 4.3735 -5.7146 15 6 2.2429 2.0166 1.1672 16 8 2.6476 3.1599 1.1671 17 6 1.9922 1.3060 2.4723 18 6 2.3241 2.2433 3.6352 19 1 3.3458 2.6077 3.5280 20 6 1.3564 3.4284 3.6272 21 6 2.1915 1.4953 4.9368 22 6 0.9756 0.9427 5.2952 23 6 0.8522 0.2511 6.4858 24 6 1.9411 0.1202 7.3261 25 6 3.1604 0.6785 6.9715 26 8 4.2328 0.5515 7.7966 27 6 4.0333 -0.1705 9.0134 28 6 3.2831 1.3672 5.7733 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3634 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8901 32 1 1.8934 -0.5139 -0.8900 33 1 1.8933 -0.5138 0.8901 34 1 1.5818 1.6877 -2.0284 35 1 2.0956 3.1410 -1.1385 36 1 4.3884 2.2155 -0.9507 37 1 3.8745 0.7621 -1.8407 38 1 3.2408 3.0310 -3.3989 39 1 4.6125 4.2517 -6.1838 40 1 2.6228 0.4188 2.5299 41 1 0.9445 1.0115 2.5302 42 1 1.5931 4.0964 4.4553 43 1 1.4523 3.9694 2.6858 44 1 0.3347 3.0640 3.7343 45 1 0.1220 1.0481 4.6420 46 1 -0.0975 -0.1830 6.7617 47 1 1.8429 -0.4161 8.2584 48 1 3.7178 -1.1884 8.7845 49 1 4.9656 -0.1969 9.5774 50 1 3.2639 0.3235 9.6070 51 1 4.2313 1.8031 5.4951 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001482971165.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:51:24 Heat of formation + Delta-G solvation = -66.293612 kcal Electronic energy + Delta-G solvation = -28518.512562 eV Core-core repulsion = 24610.443127 eV Total energy + Delta-G solvation = -3908.069435 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.43849 -40.87675 -38.88669 -37.57505 -36.36324 -35.62162 -33.62092 -31.80709 -31.51939 -30.55629 -29.66930 -28.21034 -28.12995 -25.68312 -24.50338 -24.04677 -23.52153 -23.11142 -21.19304 -19.91785 -19.16788 -18.69326 -17.94239 -17.33827 -17.19545 -16.98996 -16.63411 -16.51978 -16.37642 -15.71538 -15.41882 -15.14780 -15.09693 -14.81569 -14.64290 -14.47252 -14.39379 -14.19948 -13.86326 -13.61335 -13.32439 -13.09690 -13.05666 -12.92525 -12.81969 -12.69603 -12.61363 -12.35351 -12.28649 -12.26266 -12.10570 -11.92254 -11.87739 -11.75505 -11.73122 -11.57943 -11.00928 -10.68669 -9.77140 -9.66930 -9.11687 -9.08252 -7.99752 -5.30467 0.37241 0.52708 1.44557 1.46724 1.56757 1.67756 1.98642 2.39534 2.54369 2.82340 3.33338 3.47146 3.79641 3.90191 3.94703 4.02912 4.08217 4.14615 4.19733 4.22673 4.27156 4.31016 4.40034 4.42286 4.46193 4.48422 4.55605 4.59039 4.61594 4.67240 4.69319 4.74297 4.87036 4.92128 4.97635 5.06546 5.08363 5.10014 5.12455 5.21586 5.36072 5.40497 5.42629 5.43113 5.55358 5.61923 5.71341 5.88699 6.22045 6.48322 6.49241 7.24908 7.27986 7.99794 8.25316 9.23770 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.015548 B = 0.002123 C = 0.001982 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1800.470962 B =13185.984305 C =14127.013378 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.095 3.905 3 N -0.607 5.607 4 C 0.124 3.876 5 C 0.150 3.850 6 N -0.743 5.743 7 C -0.250 4.250 8 H 0.072 0.928 9 C -0.075 4.075 10 N -0.967 5.967 11 Si 0.979 3.021 12 H -0.268 1.268 13 H -0.286 1.286 14 H -0.292 1.292 15 C 0.504 3.496 16 O -0.579 6.579 17 C -0.118 4.118 18 C -0.034 4.034 19 H 0.060 0.940 20 C -0.143 4.143 21 C -0.037 4.037 22 C -0.152 4.152 23 C -0.076 4.076 24 C -0.215 4.215 25 C 0.113 3.887 26 O -0.344 6.344 27 C 0.019 3.981 28 C -0.172 4.172 29 H 0.091 0.909 30 H 0.064 0.936 31 H 0.045 0.955 32 H 0.081 0.919 33 H 0.104 0.896 34 H 0.090 0.910 35 H 0.058 0.942 36 H -0.002 1.002 37 H 0.028 0.972 38 H 0.375 0.625 39 H 0.253 0.747 40 H 0.110 0.890 41 H 0.126 0.874 42 H 0.051 0.949 43 H 0.052 0.948 44 H 0.073 0.927 45 H 0.144 0.856 46 H 0.154 0.846 47 H 0.147 0.853 48 H 0.066 0.934 49 H 0.113 0.887 50 H 0.065 0.935 51 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.764 -14.348 29.899 35.535 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.027 4.027 3 N -0.339 5.339 4 C 0.000 4.000 5 C 0.022 3.978 6 N -0.386 5.386 7 C -0.382 4.382 8 H 0.090 0.910 9 C -0.267 4.267 10 N -0.618 5.618 11 Si 0.807 3.193 12 H -0.192 1.192 13 H -0.213 1.213 14 H -0.219 1.219 15 C 0.294 3.706 16 O -0.459 6.459 17 C -0.157 4.157 18 C -0.053 4.053 19 H 0.079 0.921 20 C -0.200 4.200 21 C -0.037 4.037 22 C -0.170 4.170 23 C -0.094 4.094 24 C -0.233 4.233 25 C 0.068 3.932 26 O -0.258 6.258 27 C -0.075 4.075 28 C -0.191 4.191 29 H 0.109 0.891 30 H 0.083 0.917 31 H 0.065 0.935 32 H 0.099 0.901 33 H 0.122 0.878 34 H 0.108 0.892 35 H 0.077 0.923 36 H 0.016 0.984 37 H 0.046 0.954 38 H 0.207 0.793 39 H 0.062 0.938 40 H 0.128 0.872 41 H 0.144 0.856 42 H 0.070 0.930 43 H 0.071 0.929 44 H 0.092 0.908 45 H 0.162 0.838 46 H 0.172 0.828 47 H 0.165 0.835 48 H 0.085 0.915 49 H 0.132 0.868 50 H 0.084 0.916 51 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -12.185 -13.770 29.887 35.090 hybrid contribution 0.929 0.588 -0.863 1.398 sum -11.256 -13.181 29.024 33.806 Atomic orbital electron populations 1.22176 0.94233 1.03665 1.02273 1.21922 0.95705 0.80295 1.04771 1.48077 1.65383 1.15635 1.04812 1.21257 0.95525 0.97604 0.85622 1.20950 0.95099 0.95041 0.86719 1.42407 1.12018 1.61114 1.23077 1.19624 0.90292 1.25670 1.02582 0.90981 1.25645 1.01822 1.00396 0.98855 1.69831 1.33572 1.38480 1.19867 0.85004 0.79119 0.77096 0.78088 1.19196 1.21315 1.21923 1.21378 0.76247 0.86394 0.86537 1.90692 1.47093 1.20256 1.87855 1.21793 1.05964 0.99148 0.88826 1.19796 1.00671 0.94601 0.90193 0.92097 1.21881 0.98957 0.97224 1.01944 1.19562 0.93231 0.96365 0.94547 1.21154 0.97140 1.00272 0.98390 1.21283 0.98840 0.96259 0.92969 1.21509 0.92561 1.06022 1.03253 1.19173 0.87158 0.96113 0.90760 1.86049 1.34561 1.72598 1.32603 1.23318 1.04847 0.95959 0.83345 1.20439 0.99973 1.04417 0.94268 0.89051 0.91746 0.93536 0.90087 0.87785 0.89151 0.92320 0.98376 0.95375 0.79263 0.93774 0.87209 0.85639 0.92990 0.92876 0.90846 0.83830 0.82842 0.83496 0.91508 0.86825 0.91601 0.86651 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.22 10.24 71.98 0.74 -1.49 16 2 C 0.09 1.66 5.93 86.38 0.51 2.17 16 3 N -0.61 -16.50 2.47 -821.81 -2.03 -18.53 16 4 C 0.12 4.39 5.52 86.38 0.48 4.87 16 5 C 0.15 6.60 6.58 86.38 0.57 7.17 16 6 N -0.74 -40.47 5.60 -343.45 -1.92 -42.40 16 7 C -0.25 -14.79 9.99 84.03 0.84 -13.95 16 8 H 0.07 4.14 7.83 -2.91 -0.02 4.12 16 9 C -0.07 -4.47 5.50 84.86 0.47 -4.00 16 10 N -0.97 -60.92 13.06 21.65 0.28 -60.63 16 11 Si 0.98 47.68 29.55 68.60 2.03 49.70 16 12 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 13 H -0.29 -13.64 7.11 99.48 0.71 -12.93 16 14 H -0.29 -14.21 7.11 99.48 0.71 -13.50 16 15 C 0.50 14.55 7.39 87.66 0.65 15.20 16 16 O -0.58 -22.56 13.55 -3.03 -0.04 -22.60 16 17 C -0.12 -2.22 3.47 29.85 0.10 -2.12 16 18 C -0.03 -0.72 2.21 -11.54 -0.03 -0.75 16 19 H 0.06 1.64 7.69 -2.39 -0.02 1.62 16 20 C -0.14 -3.15 8.74 71.98 0.63 -2.52 16 21 C -0.04 -0.69 4.78 -19.88 -0.10 -0.78 16 22 C -0.15 -2.09 8.76 22.28 0.20 -1.90 16 23 C -0.08 -0.89 10.04 22.25 0.22 -0.67 16 24 C -0.21 -2.98 9.04 22.37 0.20 -2.78 16 25 C 0.11 2.17 6.69 22.51 0.15 2.32 16 26 O -0.34 -6.56 10.50 -92.41 -0.97 -7.53 16 27 C 0.02 0.18 9.81 113.37 1.11 1.30 16 28 C -0.17 -3.70 9.61 22.37 0.21 -3.49 16 29 H 0.09 0.81 8.14 -2.39 -0.02 0.79 16 30 H 0.06 0.77 7.22 -2.39 -0.02 0.75 16 31 H 0.05 0.78 8.14 -2.38 -0.02 0.76 16 32 H 0.08 1.49 8.07 -2.39 -0.02 1.47 16 33 H 0.10 1.29 6.44 -2.39 -0.02 1.27 16 34 H 0.09 2.91 8.07 -2.39 -0.02 2.89 16 35 H 0.06 2.39 7.42 -2.38 -0.02 2.37 16 36 H 0.00 -0.09 8.14 -2.39 -0.02 -0.11 16 37 H 0.03 1.19 8.14 -2.39 -0.02 1.17 16 38 H 0.38 21.36 7.67 -92.70 -0.71 20.65 16 39 H 0.25 15.31 8.31 -92.70 -0.77 14.53 16 40 H 0.11 1.75 7.40 -2.39 -0.02 1.73 16 41 H 0.13 1.57 6.63 -2.39 -0.02 1.55 16 42 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 43 H 0.05 1.51 5.95 -2.39 -0.01 1.50 16 44 H 0.07 1.23 7.37 -2.39 -0.02 1.22 16 45 H 0.14 1.36 7.16 -2.91 -0.02 1.34 16 46 H 0.15 0.88 8.06 -2.91 -0.02 0.86 16 47 H 0.15 1.28 6.30 -2.91 -0.02 1.27 16 48 H 0.07 0.46 7.66 -2.39 -0.02 0.44 16 49 H 0.11 0.68 8.14 -2.39 -0.02 0.66 16 50 H 0.07 0.46 7.66 -2.38 -0.02 0.44 16 51 H 0.12 2.68 7.94 -2.91 -0.02 2.66 16 Total: -1.00 -78.90 410.06 4.51 -74.39 By element: Atomic # 1 Polarization: 28.79 SS G_CDS: 0.20 Total: 29.00 kcal Atomic # 6 Polarization: -8.37 SS G_CDS: 6.96 Total: -1.41 kcal Atomic # 7 Polarization: -117.89 SS G_CDS: -3.67 Total: -121.56 kcal Atomic # 8 Polarization: -29.11 SS G_CDS: -1.01 Total: -30.12 kcal Atomic # 14 Polarization: 47.68 SS G_CDS: 2.03 Total: 49.70 kcal Total: -78.90 4.51 -74.39 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001482971165.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.098 kcal (2) G-P(sol) polarization free energy of solvation -78.900 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.802 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.508 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.392 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.294 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds