Wall clock time and date at job start Tue Mar 31 2020 18:03:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52995 * 109.47067 * 2 1 4 4 C 1.52992 * 109.47137 * 120.00267 * 2 1 3 5 5 C 1.53001 * 109.47128 * 174.99501 * 4 2 1 6 6 H 1.09002 * 109.46610 * 55.00242 * 5 4 2 7 7 C 1.53005 * 109.47326 * 174.99824 * 5 4 2 8 8 N 1.46500 * 109.47215 * 175.00221 * 7 5 4 9 9 C 1.36937 * 119.99831 * 180.02562 * 8 7 5 10 10 H 1.08001 * 119.99802 * 0.02562 * 9 8 7 11 11 C 1.38807 * 119.99855 * 180.02562 * 9 8 7 12 12 N 1.31621 * 120.00224 * 359.97438 * 11 9 8 13 13 Si 1.86800 * 120.00279 * 180.02562 * 11 9 8 14 14 H 1.48505 * 109.47257 * 89.99671 * 13 11 9 15 15 H 1.48494 * 109.47420 * 210.00051 * 13 11 9 16 16 H 1.48504 * 109.47057 * 330.00004 * 13 11 9 17 17 N 1.46499 * 109.47337 * 295.00055 * 5 4 2 18 18 C 1.34778 * 119.99970 * 84.99772 * 17 5 4 19 19 O 1.21283 * 119.99748 * 0.02562 * 18 17 5 20 20 C 1.50696 * 119.99864 * 180.02562 * 18 17 5 21 21 H 1.08997 * 109.47146 * 304.99620 * 20 18 17 22 22 C 1.53000 * 109.47461 * 65.00159 * 20 18 17 23 23 O 1.42902 * 109.46824 * 185.00156 * 20 18 17 24 24 C 1.35896 * 117.00068 * 155.32740 * 23 20 18 25 25 C 1.38734 * 120.05623 * 5.07889 * 24 23 20 26 26 C 1.38148 * 119.94361 * 179.75031 * 25 24 23 27 27 C 1.38267 * 120.05589 * 0.50360 * 26 25 24 28 28 C 1.38260 * 120.11013 * 359.77437 * 27 26 25 29 29 C 1.38144 * 120.06117 * 359.97325 * 28 27 26 30 30 H 1.09004 * 109.47010 * 299.99790 * 1 2 3 31 31 H 1.09003 * 109.47478 * 59.99375 * 1 2 3 32 32 H 1.08997 * 109.47629 * 179.97438 * 1 2 3 33 33 H 1.09000 * 109.46651 * 240.00535 * 2 1 3 34 34 H 1.08998 * 109.47432 * 60.00129 * 3 2 1 35 35 H 1.09003 * 109.47291 * 180.02562 * 3 2 1 36 36 H 1.08996 * 109.47437 * 300.00203 * 3 2 1 37 37 H 1.09001 * 109.47170 * 54.99647 * 4 2 1 38 38 H 1.08997 * 109.47706 * 294.99959 * 4 2 1 39 39 H 1.08999 * 109.47124 * 295.00775 * 7 5 4 40 40 H 1.09004 * 109.46746 * 55.00314 * 7 5 4 41 41 H 0.96994 * 119.99745 * 0.02562 * 8 7 5 42 42 H 0.96994 * 120.00496 * 180.02562 * 12 11 9 43 43 H 0.96997 * 120.00243 * 264.99931 * 17 5 4 44 44 H 1.08995 * 109.47559 * 179.97438 * 22 20 18 45 45 H 1.09005 * 109.46628 * 300.00143 * 22 20 18 46 46 H 1.09005 * 109.46838 * 59.99316 * 22 20 18 47 47 H 1.07996 * 120.02504 * 359.97438 * 25 24 23 48 48 H 1.08001 * 119.96990 * 180.23376 * 26 25 24 49 49 H 1.07997 * 119.94356 * 179.74505 * 27 26 25 50 50 H 1.07999 * 119.97033 * 179.97438 * 28 27 26 51 51 H 1.07999 * 120.03172 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2491 5 6 3.5648 -0.8312 1.1878 6 1 3.9954 0.1610 1.0526 7 6 4.0852 -1.4396 2.4917 8 7 5.5305 -1.6552 2.3873 9 6 6.2200 -2.1950 3.4401 10 1 5.6982 -2.4620 4.3472 11 6 7.5895 -2.3988 3.3414 12 7 8.2252 -2.0739 2.2356 13 14 8.5300 -3.1357 4.7772 14 1 8.5513 -4.6150 4.6481 15 1 9.9220 -2.6185 4.7749 16 1 7.8644 -2.7596 6.0503 17 7 3.9479 -1.6873 0.0624 18 6 4.0651 -1.1631 -1.1737 19 8 3.8538 0.0175 -1.3542 20 6 4.4585 -2.0439 -2.3314 21 1 5.3946 -2.5520 -2.0997 22 6 3.3622 -3.0821 -2.5781 23 8 4.6286 -1.2432 -3.5028 24 6 5.4480 -1.7318 -4.4705 25 6 5.9920 -3.0018 -4.3444 26 6 6.8206 -3.4982 -5.3321 27 6 7.1163 -2.7264 -6.4406 28 6 6.5800 -1.4582 -6.5658 29 6 5.7467 -0.9592 -5.5835 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8899 32 1 -0.3634 -1.0276 -0.0005 33 1 1.8933 -0.5138 -0.8901 34 1 1.6767 1.9563 0.8900 35 1 3.1300 1.4425 -0.0005 36 1 1.6767 1.9563 -0.8899 37 1 1.6053 -1.7198 1.2951 38 1 1.7517 -0.1585 2.1369 39 1 3.8780 -0.7596 3.3180 40 1 3.5877 -2.3925 2.6719 41 1 5.9989 -1.4158 1.5724 42 1 9.1821 -2.2167 2.1665 43 1 4.1172 -2.6314 0.2069 44 1 3.6465 -3.7189 -3.4158 45 1 3.2325 -3.6928 -1.6846 46 1 2.4261 -2.5739 -2.8098 47 1 5.7650 -3.6032 -3.4766 48 1 7.2413 -4.4882 -5.2361 49 1 7.7676 -3.1147 -7.2096 50 1 6.8128 -0.8572 -7.4324 51 1 5.3284 0.0317 -5.6816 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001496293539.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:03:02 Heat of formation + Delta-G solvation = -46.237460 kcal Electronic energy + Delta-G solvation = -29830.002062 eV Core-core repulsion = 25922.802327 eV Total energy + Delta-G solvation = -3907.199735 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.66813 -39.58575 -37.59790 -36.42641 -34.98890 -33.60365 -32.36412 -31.12606 -30.70680 -29.70595 -28.96999 -26.88569 -25.59068 -24.83186 -23.11775 -22.75826 -22.22288 -20.82522 -20.01299 -19.67471 -18.43404 -17.47295 -16.88666 -16.36064 -15.87733 -15.81289 -15.36542 -15.17219 -14.74771 -14.42684 -14.04273 -13.93799 -13.72781 -13.53209 -13.41594 -13.17254 -13.03621 -12.92323 -12.62710 -12.48927 -12.13601 -12.06156 -11.99923 -11.82940 -11.64664 -11.51039 -11.14459 -11.05428 -10.99400 -10.85363 -10.83187 -10.53954 -10.25923 -10.23551 -10.02433 -9.75712 -9.39392 -9.08281 -8.95943 -8.65307 -8.25331 -7.00727 -5.82356 -3.12416 1.25058 1.36849 2.70537 2.82749 3.39152 3.45015 3.46773 3.71431 3.73271 4.52023 4.60243 4.74898 4.79767 4.81082 4.90974 4.97698 5.04054 5.17121 5.18060 5.26225 5.29011 5.42753 5.49589 5.50316 5.57448 5.58929 5.63772 5.70298 5.85909 5.88782 5.91822 5.95993 6.03329 6.10103 6.11089 6.18057 6.23541 6.28280 6.31893 6.42467 6.43895 6.47399 6.63068 6.65950 6.68164 6.84351 6.91434 7.33860 7.64102 7.79695 8.35375 8.48246 9.47387 10.02811 10.38164 11.39877 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.007483 B = 0.003997 C = 0.002789 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3740.838099 B = 7002.855617 C =10037.796312 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.093 4.093 3 C -0.138 4.138 4 C -0.122 4.122 5 C 0.138 3.862 6 H 0.092 0.908 7 C 0.144 3.856 8 N -0.731 5.731 9 C -0.244 4.244 10 H 0.071 0.929 11 C -0.011 4.011 12 N -0.931 5.931 13 Si 0.907 3.093 14 H -0.290 1.290 15 H -0.291 1.291 16 H -0.282 1.282 17 N -0.704 5.704 18 C 0.519 3.481 19 O -0.513 6.513 20 C 0.064 3.936 21 H 0.101 0.899 22 C -0.174 4.174 23 O -0.284 6.284 24 C 0.135 3.865 25 C -0.211 4.211 26 C -0.079 4.079 27 C -0.163 4.163 28 C -0.082 4.082 29 C -0.152 4.152 30 H 0.050 0.950 31 H 0.048 0.952 32 H 0.047 0.953 33 H 0.075 0.925 34 H 0.038 0.962 35 H 0.075 0.925 36 H 0.043 0.957 37 H 0.062 0.938 38 H 0.071 0.929 39 H 0.034 0.966 40 H 0.024 0.976 41 H 0.386 0.614 42 H 0.256 0.744 43 H 0.403 0.597 44 H 0.073 0.927 45 H 0.080 0.920 46 H 0.072 0.928 47 H 0.131 0.869 48 H 0.124 0.876 49 H 0.121 0.879 50 H 0.127 0.873 51 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.913 -1.958 -14.570 18.309 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.112 4.112 3 C -0.195 4.195 4 C -0.161 4.161 5 C 0.034 3.966 6 H 0.110 0.890 7 C 0.016 3.984 8 N -0.376 5.376 9 C -0.375 4.375 10 H 0.089 0.911 11 C -0.207 4.207 12 N -0.579 5.579 13 Si 0.738 3.262 14 H -0.217 1.217 15 H -0.218 1.218 16 H -0.207 1.207 17 N -0.357 5.357 18 C 0.303 3.697 19 O -0.388 6.388 20 C 0.004 3.996 21 H 0.119 0.881 22 C -0.231 4.231 23 O -0.196 6.196 24 C 0.089 3.911 25 C -0.229 4.229 26 C -0.097 4.097 27 C -0.182 4.182 28 C -0.101 4.101 29 C -0.170 4.170 30 H 0.069 0.931 31 H 0.068 0.932 32 H 0.066 0.934 33 H 0.093 0.907 34 H 0.057 0.943 35 H 0.094 0.906 36 H 0.062 0.938 37 H 0.081 0.919 38 H 0.089 0.911 39 H 0.052 0.948 40 H 0.042 0.958 41 H 0.220 0.780 42 H 0.065 0.935 43 H 0.238 0.762 44 H 0.091 0.909 45 H 0.099 0.901 46 H 0.091 0.909 47 H 0.149 0.851 48 H 0.142 0.858 49 H 0.139 0.861 50 H 0.145 0.855 51 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -11.138 -0.963 -14.509 18.316 hybrid contribution 0.986 -1.080 0.739 1.638 sum -10.152 -2.043 -13.770 17.229 Atomic orbital electron populations 1.21866 0.96392 1.00889 1.01171 1.21144 0.94180 0.97304 0.98538 1.21829 1.03062 0.94964 0.99690 1.22025 0.95018 1.00606 0.98451 1.21407 0.93957 0.95593 0.85685 0.89018 1.20972 0.86998 0.97347 0.93076 1.42347 1.01470 1.76064 1.17744 1.19211 0.90409 1.33510 0.94342 0.91138 1.24740 0.96567 1.01966 0.97419 1.69660 1.08660 1.53482 1.26102 0.86200 0.79439 0.78739 0.81844 1.21718 1.21760 1.20740 1.45828 1.69743 1.13406 1.06688 1.19845 0.77816 0.88470 0.83562 1.90719 1.48447 1.15593 1.84073 1.22244 1.00969 0.91756 0.84634 0.88133 1.22318 0.98933 0.98264 1.03619 1.86195 1.61603 1.46131 1.25654 1.19102 0.90465 0.92280 0.89254 1.21370 1.03468 0.96196 1.01880 1.20961 0.96056 0.99552 0.93173 1.21045 1.02742 0.95256 0.99110 1.20949 0.95644 0.95566 0.97893 1.20464 1.02274 1.00663 0.93633 0.93112 0.93241 0.93357 0.90710 0.94279 0.90582 0.93800 0.91932 0.91068 0.94837 0.95798 0.78029 0.93454 0.76195 0.90854 0.90133 0.90860 0.85119 0.85798 0.86077 0.85508 0.85163 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.66 9.19 37.16 0.34 -1.32 16 2 C -0.09 -1.25 2.38 -90.63 -0.22 -1.47 16 3 C -0.14 -2.01 8.04 37.15 0.30 -1.71 16 4 C -0.12 -1.62 4.36 -26.73 -0.12 -1.73 16 5 C 0.14 2.19 2.33 -67.93 -0.16 2.03 16 6 H 0.09 1.68 5.92 -51.93 -0.31 1.37 16 7 C 0.14 2.69 5.82 -4.04 -0.02 2.67 16 8 N -0.73 -17.56 5.43 -59.91 -0.33 -17.89 16 9 C -0.24 -6.57 9.99 -15.06 -0.15 -6.72 16 10 H 0.07 1.84 7.83 -52.49 -0.41 1.43 16 11 C -0.01 -0.30 5.50 -17.43 -0.10 -0.39 16 12 N -0.93 -27.54 13.06 55.49 0.72 -26.81 16 13 Si 0.91 21.92 29.55 -169.99 -5.02 16.90 16 14 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 15 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 16 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 17 N -0.70 -10.51 4.43 -53.80 -0.24 -10.74 16 18 C 0.52 8.16 5.73 -10.99 -0.06 8.09 16 19 O -0.51 -9.45 11.47 -14.31 -0.16 -9.62 16 20 C 0.06 0.86 2.64 -27.89 -0.07 0.78 16 21 H 0.10 1.32 6.31 -51.93 -0.33 0.99 16 22 C -0.17 -1.77 9.12 37.16 0.34 -1.43 16 23 O -0.28 -4.30 9.34 -39.27 -0.37 -4.67 16 24 C 0.13 1.84 6.60 -39.21 -0.26 1.58 16 25 C -0.21 -2.55 8.24 -39.43 -0.32 -2.87 16 26 C -0.08 -0.85 10.04 -39.60 -0.40 -1.25 16 27 C -0.16 -1.64 10.04 -39.56 -0.40 -2.04 16 28 C -0.08 -0.85 10.04 -39.61 -0.40 -1.25 16 29 C -0.15 -1.88 9.99 -39.43 -0.39 -2.27 16 30 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 32 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 33 H 0.07 1.12 5.19 -51.93 -0.27 0.85 16 34 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.08 1.29 4.76 -51.93 -0.25 1.04 16 36 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 38 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 39 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 40 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 41 H 0.39 9.92 7.33 -40.82 -0.30 9.62 16 42 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 43 H 0.40 5.61 8.39 -40.82 -0.34 5.27 16 44 H 0.07 0.67 6.91 -51.93 -0.36 0.31 16 45 H 0.08 0.69 7.93 -51.93 -0.41 0.28 16 46 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 47 H 0.13 1.42 5.43 -52.49 -0.29 1.14 16 48 H 0.12 1.06 8.06 -52.49 -0.42 0.63 16 49 H 0.12 0.93 8.06 -52.49 -0.42 0.51 16 50 H 0.13 0.98 8.06 -52.49 -0.42 0.55 16 51 H 0.13 1.51 8.06 -52.49 -0.42 1.08 16 LS Contribution 402.60 15.07 6.07 6.07 Total: -1.00 -31.74 402.60 -9.73 -41.46 By element: Atomic # 1 Polarization: 22.91 SS G_CDS: -8.31 Total: 14.60 kcal Atomic # 6 Polarization: -7.21 SS G_CDS: -2.09 Total: -9.29 kcal Atomic # 7 Polarization: -55.60 SS G_CDS: 0.16 Total: -55.44 kcal Atomic # 8 Polarization: -13.75 SS G_CDS: -0.53 Total: -14.28 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.90 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -31.74 -9.73 -41.46 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001496293539.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.774 kcal (2) G-P(sol) polarization free energy of solvation -31.735 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.509 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.728 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.463 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.237 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds