Wall clock time and date at job start Tue Mar 31 2020 18:03:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52995 * 109.47067 * 2 1 4 4 C 1.52992 * 109.47137 * 120.00267 * 2 1 3 5 5 C 1.53001 * 109.47128 * 174.99501 * 4 2 1 6 6 H 1.09002 * 109.46610 * 55.00242 * 5 4 2 7 7 C 1.53005 * 109.47326 * 174.99824 * 5 4 2 8 8 N 1.46500 * 109.47215 * 175.00221 * 7 5 4 9 9 C 1.36937 * 119.99831 * 180.02562 * 8 7 5 10 10 H 1.08001 * 119.99802 * 0.02562 * 9 8 7 11 11 C 1.38807 * 119.99855 * 180.02562 * 9 8 7 12 12 N 1.31621 * 120.00224 * 359.97438 * 11 9 8 13 13 Si 1.86800 * 120.00279 * 180.02562 * 11 9 8 14 14 H 1.48505 * 109.47257 * 89.99671 * 13 11 9 15 15 H 1.48494 * 109.47420 * 210.00051 * 13 11 9 16 16 H 1.48504 * 109.47057 * 330.00004 * 13 11 9 17 17 N 1.46499 * 109.47337 * 295.00055 * 5 4 2 18 18 C 1.34778 * 119.99970 * 84.99772 * 17 5 4 19 19 O 1.21283 * 119.99748 * 0.02562 * 18 17 5 20 20 C 1.50696 * 119.99864 * 180.02562 * 18 17 5 21 21 H 1.08997 * 109.47146 * 304.99620 * 20 18 17 22 22 C 1.53000 * 109.47461 * 65.00159 * 20 18 17 23 23 O 1.42902 * 109.46824 * 185.00156 * 20 18 17 24 24 C 1.35896 * 117.00068 * 155.32740 * 23 20 18 25 25 C 1.38734 * 120.05623 * 5.07889 * 24 23 20 26 26 C 1.38148 * 119.94361 * 179.75031 * 25 24 23 27 27 C 1.38267 * 120.05589 * 0.50360 * 26 25 24 28 28 C 1.38260 * 120.11013 * 359.77437 * 27 26 25 29 29 C 1.38144 * 120.06117 * 359.97325 * 28 27 26 30 30 H 1.09004 * 109.47010 * 299.99790 * 1 2 3 31 31 H 1.09003 * 109.47478 * 59.99375 * 1 2 3 32 32 H 1.08997 * 109.47629 * 179.97438 * 1 2 3 33 33 H 1.09000 * 109.46651 * 240.00535 * 2 1 3 34 34 H 1.08998 * 109.47432 * 60.00129 * 3 2 1 35 35 H 1.09003 * 109.47291 * 180.02562 * 3 2 1 36 36 H 1.08996 * 109.47437 * 300.00203 * 3 2 1 37 37 H 1.09001 * 109.47170 * 54.99647 * 4 2 1 38 38 H 1.08997 * 109.47706 * 294.99959 * 4 2 1 39 39 H 1.08999 * 109.47124 * 295.00775 * 7 5 4 40 40 H 1.09004 * 109.46746 * 55.00314 * 7 5 4 41 41 H 0.96994 * 119.99745 * 0.02562 * 8 7 5 42 42 H 0.96994 * 120.00496 * 180.02562 * 12 11 9 43 43 H 0.96997 * 120.00243 * 264.99931 * 17 5 4 44 44 H 1.08995 * 109.47559 * 179.97438 * 22 20 18 45 45 H 1.09005 * 109.46628 * 300.00143 * 22 20 18 46 46 H 1.09005 * 109.46838 * 59.99316 * 22 20 18 47 47 H 1.07996 * 120.02504 * 359.97438 * 25 24 23 48 48 H 1.08001 * 119.96990 * 180.23376 * 26 25 24 49 49 H 1.07997 * 119.94356 * 179.74505 * 27 26 25 50 50 H 1.07999 * 119.97033 * 179.97438 * 28 27 26 51 51 H 1.07999 * 120.03172 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2491 5 6 3.5648 -0.8312 1.1878 6 1 3.9954 0.1610 1.0526 7 6 4.0852 -1.4396 2.4917 8 7 5.5305 -1.6552 2.3873 9 6 6.2200 -2.1950 3.4401 10 1 5.6982 -2.4620 4.3472 11 6 7.5895 -2.3988 3.3414 12 7 8.2252 -2.0739 2.2356 13 14 8.5300 -3.1357 4.7772 14 1 8.5513 -4.6150 4.6481 15 1 9.9220 -2.6185 4.7749 16 1 7.8644 -2.7596 6.0503 17 7 3.9479 -1.6873 0.0624 18 6 4.0651 -1.1631 -1.1737 19 8 3.8538 0.0175 -1.3542 20 6 4.4585 -2.0439 -2.3314 21 1 5.3946 -2.5520 -2.0997 22 6 3.3622 -3.0821 -2.5781 23 8 4.6286 -1.2432 -3.5028 24 6 5.4480 -1.7318 -4.4705 25 6 5.9920 -3.0018 -4.3444 26 6 6.8206 -3.4982 -5.3321 27 6 7.1163 -2.7264 -6.4406 28 6 6.5800 -1.4582 -6.5658 29 6 5.7467 -0.9592 -5.5835 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8899 32 1 -0.3634 -1.0276 -0.0005 33 1 1.8933 -0.5138 -0.8901 34 1 1.6767 1.9563 0.8900 35 1 3.1300 1.4425 -0.0005 36 1 1.6767 1.9563 -0.8899 37 1 1.6053 -1.7198 1.2951 38 1 1.7517 -0.1585 2.1369 39 1 3.8780 -0.7596 3.3180 40 1 3.5877 -2.3925 2.6719 41 1 5.9989 -1.4158 1.5724 42 1 9.1821 -2.2167 2.1665 43 1 4.1172 -2.6314 0.2069 44 1 3.6465 -3.7189 -3.4158 45 1 3.2325 -3.6928 -1.6846 46 1 2.4261 -2.5739 -2.8098 47 1 5.7650 -3.6032 -3.4766 48 1 7.2413 -4.4882 -5.2361 49 1 7.7676 -3.1147 -7.2096 50 1 6.8128 -0.8572 -7.4324 51 1 5.3284 0.0317 -5.6816 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001496293539.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:03:01 Heat of formation + Delta-G solvation = -64.333666 kcal Electronic energy + Delta-G solvation = -29830.786773 eV Core-core repulsion = 25922.802327 eV Total energy + Delta-G solvation = -3907.984446 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.76228 -40.69291 -38.60687 -37.68109 -36.45205 -35.12998 -33.61067 -32.60410 -31.72402 -30.69668 -30.25985 -27.95946 -27.18190 -25.86183 -24.66792 -23.83600 -23.24797 -22.12043 -21.22999 -20.77838 -19.41669 -19.26055 -18.23609 -17.47268 -17.04836 -16.80469 -16.65804 -16.43210 -16.09271 -15.59363 -15.32627 -15.18379 -14.94395 -14.87397 -14.51665 -14.42800 -14.30148 -14.06802 -13.75940 -13.50197 -13.31775 -13.25182 -13.02276 -12.96416 -12.81897 -12.78116 -12.53070 -12.45053 -12.33506 -12.10764 -12.07763 -11.88688 -11.73650 -11.63212 -11.38533 -11.23762 -10.96982 -10.62729 -9.94677 -9.93095 -9.18028 -9.00611 -7.94166 -5.23540 0.39135 0.47936 1.48591 1.49762 1.56324 1.58168 1.66091 2.55717 2.63409 2.84952 3.40380 3.52464 3.67512 3.75873 3.89470 3.93875 4.00237 4.00968 4.09306 4.24745 4.28305 4.37639 4.40006 4.42965 4.51188 4.61794 4.65015 4.67364 4.76355 4.81885 4.88185 4.90239 4.92643 5.00328 5.06089 5.09155 5.10320 5.16901 5.23854 5.36316 5.39900 5.48193 5.51649 5.56745 5.59967 5.60342 5.66443 5.84927 6.26477 6.36561 6.58972 7.25560 7.34192 8.07847 8.31316 9.28801 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.007483 B = 0.003997 C = 0.002789 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3740.838099 B = 7002.855617 C =10037.796312 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.090 4.090 3 C -0.134 4.134 4 C -0.112 4.112 5 C 0.148 3.852 6 H 0.063 0.937 7 C 0.145 3.855 8 N -0.743 5.743 9 C -0.243 4.243 10 H 0.079 0.921 11 C -0.072 4.072 12 N -0.969 5.969 13 Si 0.971 3.029 14 H -0.285 1.285 15 H -0.301 1.301 16 H -0.270 1.270 17 N -0.698 5.698 18 C 0.514 3.486 19 O -0.545 6.545 20 C 0.067 3.933 21 H 0.100 0.900 22 C -0.163 4.163 23 O -0.309 6.309 24 C 0.106 3.894 25 C -0.221 4.221 26 C -0.086 4.086 27 C -0.162 4.162 28 C -0.082 4.082 29 C -0.172 4.172 30 H 0.060 0.940 31 H 0.049 0.951 32 H 0.060 0.940 33 H 0.058 0.942 34 H 0.051 0.949 35 H 0.046 0.954 36 H 0.038 0.962 37 H 0.081 0.919 38 H 0.082 0.918 39 H 0.036 0.964 40 H 0.043 0.957 41 H 0.374 0.626 42 H 0.249 0.751 43 H 0.409 0.591 44 H 0.085 0.915 45 H 0.098 0.902 46 H 0.068 0.932 47 H 0.137 0.863 48 H 0.147 0.853 49 H 0.151 0.849 50 H 0.154 0.846 51 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.894 -3.651 -14.562 19.153 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.109 4.109 3 C -0.191 4.191 4 C -0.151 4.151 5 C 0.043 3.957 6 H 0.081 0.919 7 C 0.019 3.981 8 N -0.386 5.386 9 C -0.374 4.374 10 H 0.097 0.903 11 C -0.264 4.264 12 N -0.619 5.619 13 Si 0.800 3.200 14 H -0.212 1.212 15 H -0.228 1.228 16 H -0.195 1.195 17 N -0.350 5.350 18 C 0.300 3.700 19 O -0.423 6.423 20 C 0.007 3.993 21 H 0.118 0.882 22 C -0.221 4.221 23 O -0.223 6.223 24 C 0.061 3.939 25 C -0.240 4.240 26 C -0.103 4.103 27 C -0.180 4.180 28 C -0.100 4.100 29 C -0.191 4.191 30 H 0.079 0.921 31 H 0.068 0.932 32 H 0.079 0.921 33 H 0.076 0.924 34 H 0.070 0.930 35 H 0.065 0.935 36 H 0.057 0.943 37 H 0.099 0.901 38 H 0.100 0.900 39 H 0.054 0.946 40 H 0.061 0.939 41 H 0.206 0.794 42 H 0.058 0.942 43 H 0.245 0.755 44 H 0.103 0.897 45 H 0.117 0.883 46 H 0.087 0.913 47 H 0.155 0.845 48 H 0.165 0.835 49 H 0.168 0.832 50 H 0.172 0.828 51 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -12.167 -2.678 -14.479 19.101 hybrid contribution 1.284 -0.502 0.690 1.542 sum -10.883 -3.180 -13.789 17.852 Atomic orbital electron populations 1.21803 0.94271 1.01936 1.01718 1.21077 0.95836 0.96097 0.97862 1.21763 1.01135 0.96207 1.00015 1.21957 0.92526 1.01842 0.98788 1.21210 0.95749 0.94003 0.84747 0.91870 1.21123 0.84249 0.98239 0.94530 1.42525 1.03577 1.75832 1.16659 1.19629 0.90795 1.31978 0.95038 0.90289 1.25510 0.97684 1.03401 0.99807 1.69823 1.08384 1.55565 1.28154 0.85183 0.77472 0.77957 0.79384 1.21152 1.22775 1.19519 1.45750 1.69451 1.13510 1.06331 1.20308 0.77098 0.88380 0.84213 1.90708 1.49916 1.17054 1.84595 1.22274 1.01947 0.91525 0.83555 0.88223 1.22279 0.97392 0.97460 1.04953 1.86141 1.62450 1.47369 1.26331 1.19399 0.91493 0.93426 0.89548 1.21544 1.03901 0.95794 1.02730 1.21331 0.95447 1.00682 0.92887 1.21456 1.02280 0.94854 0.99383 1.21306 0.94528 0.96120 0.98013 1.20703 1.03296 1.00839 0.94245 0.92093 0.93207 0.92053 0.92381 0.93025 0.93501 0.94287 0.90063 0.89993 0.94650 0.93930 0.79440 0.94178 0.75478 0.89652 0.88295 0.91267 0.84492 0.83506 0.83177 0.82805 0.85471 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.89 9.19 71.98 0.66 -2.23 16 2 C -0.09 -2.36 2.38 -10.80 -0.03 -2.38 16 3 C -0.13 -3.95 8.04 71.98 0.58 -3.37 16 4 C -0.11 -2.80 4.36 30.59 0.13 -2.67 16 5 C 0.15 4.68 2.33 44.99 0.10 4.79 16 6 H 0.06 2.41 5.92 -2.39 -0.01 2.39 16 7 C 0.15 5.29 5.82 86.38 0.50 5.79 16 8 N -0.74 -35.73 5.43 -343.45 -1.87 -37.60 16 9 C -0.24 -12.96 9.99 84.03 0.84 -12.12 16 10 H 0.08 4.01 7.83 -2.91 -0.02 3.99 16 11 C -0.07 -4.00 5.50 84.86 0.47 -3.53 16 12 N -0.97 -58.29 13.06 21.65 0.28 -58.01 16 13 Si 0.97 45.02 29.55 68.60 2.03 47.05 16 14 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 15 H -0.30 -14.30 7.11 99.48 0.71 -13.60 16 16 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 17 N -0.70 -20.97 4.43 -442.52 -1.96 -22.93 16 18 C 0.51 16.74 5.73 87.66 0.50 17.24 16 19 O -0.55 -21.20 11.47 15.95 0.18 -21.01 16 20 C 0.07 1.84 2.64 29.85 0.08 1.92 16 21 H 0.10 2.71 6.31 -2.39 -0.02 2.69 16 22 C -0.16 -3.23 9.12 71.98 0.66 -2.57 16 23 O -0.31 -9.86 9.34 -73.39 -0.69 -10.55 16 24 C 0.11 2.99 6.60 22.51 0.15 3.14 16 25 C -0.22 -5.31 8.24 22.37 0.18 -5.13 16 26 C -0.09 -1.70 10.04 22.26 0.22 -1.48 16 27 C -0.16 -2.91 10.04 22.28 0.22 -2.68 16 28 C -0.08 -1.60 10.04 22.25 0.22 -1.37 16 29 C -0.17 -4.35 9.99 22.37 0.22 -4.13 16 30 H 0.06 1.14 8.14 -2.38 -0.02 1.12 16 31 H 0.05 1.02 8.14 -2.39 -0.02 1.01 16 32 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 33 H 0.06 1.74 5.19 -2.39 -0.01 1.73 16 34 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 35 H 0.05 1.66 4.76 -2.39 -0.01 1.65 16 36 H 0.04 1.14 8.14 -2.39 -0.02 1.12 16 37 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 38 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 39 H 0.04 1.30 8.14 -2.39 -0.02 1.29 16 40 H 0.04 1.43 8.14 -2.38 -0.02 1.42 16 41 H 0.37 19.65 7.33 -92.71 -0.68 18.97 16 42 H 0.25 14.68 8.31 -92.71 -0.77 13.91 16 43 H 0.41 11.23 8.39 -92.71 -0.78 10.45 16 44 H 0.08 1.48 6.91 -2.39 -0.02 1.47 16 45 H 0.10 1.55 7.93 -2.38 -0.02 1.53 16 46 H 0.07 1.43 8.14 -2.38 -0.02 1.41 16 47 H 0.14 2.96 5.43 -2.91 -0.02 2.95 16 48 H 0.15 2.16 8.06 -2.91 -0.02 2.13 16 49 H 0.15 1.79 8.06 -2.91 -0.02 1.77 16 50 H 0.15 2.05 8.06 -2.91 -0.02 2.02 16 51 H 0.13 3.13 8.06 -2.91 -0.02 3.10 16 Total: -1.00 -69.76 402.60 3.18 -66.57 By element: Atomic # 1 Polarization: 47.79 SS G_CDS: -0.52 Total: 47.26 kcal Atomic # 6 Polarization: -16.52 SS G_CDS: 5.73 Total: -10.79 kcal Atomic # 7 Polarization: -114.99 SS G_CDS: -3.54 Total: -118.53 kcal Atomic # 8 Polarization: -31.06 SS G_CDS: -0.50 Total: -31.56 kcal Atomic # 14 Polarization: 45.02 SS G_CDS: 2.03 Total: 47.05 kcal Total: -69.76 3.18 -66.57 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001496293539.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.239 kcal (2) G-P(sol) polarization free energy of solvation -69.757 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.518 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.184 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.573 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.334 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds