Wall clock time and date at job start Tue Mar 31 2020 18:03:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53006 * 109.47091 * 2 1 4 4 C 1.52995 * 109.47514 * 120.00126 * 2 1 3 5 5 C 1.53006 * 109.47138 * 175.25559 * 4 2 1 6 6 H 1.08999 * 109.46928 * 54.41331 * 5 4 2 7 7 C 1.53002 * 109.46979 * 294.40713 * 5 4 2 8 8 N 1.46497 * 109.46784 * 184.99773 * 7 5 4 9 9 C 1.36936 * 119.99997 * 180.02562 * 8 7 5 10 10 H 1.07994 * 119.99917 * 359.72865 * 9 8 7 11 11 C 1.38816 * 120.00197 * 179.72740 * 9 8 7 12 12 N 1.31621 * 119.99696 * 0.02562 * 11 9 8 13 13 Si 1.86800 * 120.00215 * 180.02562 * 11 9 8 14 14 H 1.48498 * 109.47411 * 89.99727 * 13 11 9 15 15 H 1.48493 * 109.47198 * 210.00251 * 13 11 9 16 16 H 1.48501 * 109.46675 * 330.00016 * 13 11 9 17 17 N 1.46504 * 109.47020 * 174.41231 * 5 4 2 18 18 C 1.34776 * 119.99710 * 272.87981 * 17 5 4 19 19 O 1.21282 * 120.00012 * 5.22253 * 18 17 5 20 20 C 1.50700 * 119.99801 * 185.23092 * 18 17 5 21 21 H 1.08996 * 109.46945 * 304.99018 * 20 18 17 22 22 C 1.53003 * 109.47161 * 64.99773 * 20 18 17 23 23 O 1.42900 * 109.46805 * 184.99328 * 20 18 17 24 24 C 1.35906 * 116.99818 * 153.65024 * 23 20 18 25 25 C 1.38729 * 120.05454 * 4.85798 * 24 23 20 26 26 C 1.38145 * 119.94400 * 179.74919 * 25 24 23 27 27 C 1.38266 * 120.05586 * 0.50254 * 26 25 24 28 28 C 1.38267 * 120.10978 * 359.77243 * 27 26 25 29 29 C 1.38144 * 120.05457 * 359.97438 * 28 27 26 30 30 H 1.09001 * 109.46993 * 299.99278 * 1 2 3 31 31 H 1.08995 * 109.47375 * 59.99494 * 1 2 3 32 32 H 1.08998 * 109.47059 * 179.97438 * 1 2 3 33 33 H 1.09001 * 109.46993 * 240.00722 * 2 1 3 34 34 H 1.08998 * 109.47460 * 305.81361 * 3 2 1 35 35 H 1.09006 * 109.46483 * 65.81424 * 3 2 1 36 36 H 1.08996 * 109.47015 * 185.81272 * 3 2 1 37 37 H 1.09004 * 109.46862 * 55.25871 * 4 2 1 38 38 H 1.08992 * 109.47308 * 295.25517 * 4 2 1 39 39 H 1.08998 * 109.47006 * 65.00414 * 7 5 4 40 40 H 1.08995 * 109.47478 * 305.00213 * 7 5 4 41 41 H 0.97005 * 120.00383 * 359.73429 * 8 7 5 42 42 H 0.97003 * 119.99676 * 179.97438 * 12 11 9 43 43 H 0.96999 * 119.99917 * 92.86985 * 17 5 4 44 44 H 1.09001 * 109.46599 * 299.99533 * 22 20 18 45 45 H 1.08994 * 109.47418 * 60.00132 * 22 20 18 46 46 H 1.09006 * 109.46712 * 180.02562 * 22 20 18 47 47 H 1.08008 * 120.02913 * 359.97438 * 25 24 23 48 48 H 1.08005 * 119.97436 * 180.23330 * 26 25 24 49 49 H 1.08001 * 119.94547 * 179.74830 * 27 26 25 50 50 H 1.08003 * 119.97177 * 179.97438 * 28 27 26 51 51 H 1.08001 * 120.02491 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 3.5654 -0.8253 1.1908 6 1 3.9921 0.1674 1.0475 7 6 3.9707 -1.7282 0.0239 8 7 5.4224 -1.9243 0.0397 9 6 6.0188 -2.7016 -0.9170 10 1 5.4184 -3.1736 -1.6806 11 6 7.3950 -2.8828 -0.9054 12 7 8.1266 -2.3079 0.0255 13 14 8.2086 -3.9426 -2.2110 14 1 8.5793 -3.0974 -3.3743 15 1 9.4296 -4.5721 -1.6473 16 1 7.2633 -5.0008 -2.6491 17 7 4.0643 -1.3949 2.4450 18 6 4.3292 -0.5894 3.4926 19 8 4.0659 0.5929 3.4303 20 6 4.9527 -1.1577 4.7413 21 1 4.3436 -1.9840 5.1078 22 6 6.3610 -1.6639 4.4233 23 8 5.0269 -0.1403 5.7421 24 6 5.0284 -0.5488 7.0383 25 6 5.0615 -1.9024 7.3401 26 6 5.0681 -2.3150 8.6585 27 6 5.0313 -1.3804 9.6768 28 6 4.9925 -0.0308 9.3785 29 6 4.9910 0.3870 8.0618 30 1 -0.3633 0.5137 0.8901 31 1 -0.3634 0.5139 -0.8899 32 1 -0.3633 -1.0276 -0.0005 33 1 1.8933 -0.5137 -0.8901 34 1 1.5942 1.9856 -0.8333 35 1 1.7641 1.9254 0.9375 36 1 3.1249 1.4443 -0.1041 37 1 1.6090 -1.7215 1.2926 38 1 1.7478 -0.1608 2.1371 39 1 3.6775 -1.2606 -0.9160 40 1 3.4727 -2.6928 0.1208 41 1 5.9618 -1.5001 0.7254 42 1 9.0883 -2.4349 0.0338 43 1 4.2039 -2.3518 2.5215 44 1 6.3043 -2.4399 3.6600 45 1 6.9701 -0.8376 4.0569 46 1 6.8118 -2.0754 5.3265 47 1 5.0857 -2.6331 6.5450 48 1 5.0977 -3.3686 8.8941 49 1 5.0324 -1.7050 10.7068 50 1 4.9633 0.6973 10.1756 51 1 4.9602 1.4412 7.8293 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001496293543.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:03:08 Heat of formation + Delta-G solvation = -52.635510 kcal Electronic energy + Delta-G solvation = -29356.250290 eV Core-core repulsion = 25448.773115 eV Total energy + Delta-G solvation = -3907.477176 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.61512 -39.43631 -37.69732 -36.84921 -34.86484 -33.63466 -32.31359 -31.12135 -30.72979 -29.72451 -28.86861 -27.01997 -25.59318 -24.74714 -23.13689 -22.73290 -22.26173 -21.21536 -20.08350 -19.44137 -18.45969 -17.51007 -16.87658 -16.33521 -15.85757 -15.61699 -15.43881 -15.18902 -14.54089 -14.45300 -14.36494 -14.10095 -13.59597 -13.52424 -13.49518 -13.25546 -13.02996 -12.82804 -12.60144 -12.33883 -12.26923 -12.17194 -11.90747 -11.77060 -11.69735 -11.65801 -11.12397 -11.10253 -10.90369 -10.85765 -10.80166 -10.77975 -10.44955 -10.27483 -10.03896 -9.78635 -9.48969 -9.14444 -8.95049 -8.70468 -8.29252 -7.00057 -5.82493 -3.12086 1.19018 1.31719 2.67999 2.81974 3.39342 3.44931 3.46251 3.65703 3.72593 4.52727 4.58829 4.70419 4.76567 4.82509 4.95486 4.99690 5.01498 5.05711 5.10648 5.22719 5.30682 5.39173 5.48548 5.50769 5.55520 5.71368 5.73649 5.77044 5.78042 5.83952 5.87229 5.92639 6.00745 6.09855 6.16362 6.18727 6.20832 6.26157 6.31018 6.33729 6.38164 6.41801 6.49040 6.58035 6.62924 6.68318 6.89708 7.31807 7.64249 7.76980 8.35323 8.44134 9.47478 10.02855 10.38525 11.39623 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.008387 B = 0.003415 C = 0.002569 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3337.631416 B = 8196.508965 C =10896.708056 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.096 4.096 3 C -0.148 4.148 4 C -0.120 4.120 5 C 0.138 3.862 6 H 0.092 0.908 7 C 0.144 3.856 8 N -0.731 5.731 9 C -0.243 4.243 10 H 0.070 0.930 11 C -0.011 4.011 12 N -0.930 5.930 13 Si 0.906 3.094 14 H -0.290 1.290 15 H -0.292 1.292 16 H -0.282 1.282 17 N -0.706 5.706 18 C 0.520 3.480 19 O -0.524 6.524 20 C 0.068 3.932 21 H 0.094 0.906 22 C -0.173 4.173 23 O -0.284 6.284 24 C 0.136 3.864 25 C -0.213 4.213 26 C -0.080 4.080 27 C -0.165 4.165 28 C -0.082 4.082 29 C -0.152 4.152 30 H 0.051 0.949 31 H 0.052 0.948 32 H 0.052 0.948 33 H 0.077 0.923 34 H 0.050 0.950 35 H 0.053 0.947 36 H 0.060 0.940 37 H 0.062 0.938 38 H 0.065 0.935 39 H 0.037 0.963 40 H 0.024 0.976 41 H 0.386 0.614 42 H 0.255 0.745 43 H 0.403 0.597 44 H 0.090 0.910 45 H 0.078 0.922 46 H 0.069 0.931 47 H 0.131 0.869 48 H 0.124 0.876 49 H 0.121 0.879 50 H 0.127 0.873 51 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.208 1.111 14.492 18.354 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.115 4.115 3 C -0.205 4.205 4 C -0.159 4.159 5 C 0.034 3.966 6 H 0.110 0.890 7 C 0.016 3.984 8 N -0.376 5.376 9 C -0.374 4.374 10 H 0.088 0.912 11 C -0.207 4.207 12 N -0.578 5.578 13 Si 0.737 3.263 14 H -0.217 1.217 15 H -0.218 1.218 16 H -0.208 1.208 17 N -0.358 5.358 18 C 0.304 3.696 19 O -0.399 6.399 20 C 0.008 3.992 21 H 0.111 0.889 22 C -0.231 4.231 23 O -0.197 6.197 24 C 0.090 3.910 25 C -0.232 4.232 26 C -0.098 4.098 27 C -0.183 4.183 28 C -0.100 4.100 29 C -0.171 4.171 30 H 0.070 0.930 31 H 0.071 0.929 32 H 0.071 0.929 33 H 0.096 0.904 34 H 0.069 0.931 35 H 0.072 0.928 36 H 0.079 0.921 37 H 0.081 0.919 38 H 0.084 0.916 39 H 0.054 0.946 40 H 0.042 0.958 41 H 0.220 0.780 42 H 0.065 0.935 43 H 0.238 0.762 44 H 0.108 0.892 45 H 0.097 0.903 46 H 0.088 0.912 47 H 0.149 0.851 48 H 0.142 0.858 49 H 0.139 0.861 50 H 0.145 0.855 51 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -11.337 2.064 14.206 18.292 hybrid contribution 0.871 -1.199 -0.503 1.566 sum -10.465 0.865 13.702 17.263 Atomic orbital electron populations 1.21822 0.95564 1.01376 1.01393 1.21124 0.95266 0.96655 0.98483 1.21874 1.01646 0.95699 1.01316 1.21984 0.95078 1.00527 0.98305 1.21379 0.93168 0.99238 0.82854 0.89041 1.21024 0.87350 0.95655 0.94350 1.42351 1.00489 1.59811 1.34936 1.19199 0.90379 1.22093 1.05693 0.91191 1.24732 0.96263 1.00893 0.98811 1.69660 1.05249 1.47831 1.35052 0.86210 0.78967 0.79938 0.81158 1.21728 1.21796 1.20795 1.45827 1.66576 1.10966 1.12475 1.19953 0.78424 0.86962 0.84214 1.90709 1.51696 1.15776 1.81759 1.22275 0.99171 0.90360 0.87404 0.88852 1.22303 0.94045 1.03391 1.03332 1.86223 1.87531 1.34155 1.11745 1.19131 0.95065 0.92777 0.84007 1.21363 1.08911 0.94744 0.98168 1.20949 0.97198 0.99641 0.91995 1.21044 1.04866 0.93187 0.99207 1.20958 0.97642 0.96013 0.95353 1.20485 1.06259 0.99464 0.90908 0.93004 0.92889 0.92898 0.90440 0.93131 0.92753 0.92127 0.91890 0.91640 0.94587 0.95837 0.78036 0.93491 0.76182 0.89160 0.90275 0.91174 0.85108 0.85842 0.86089 0.85487 0.85106 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.54 9.19 37.16 0.34 -1.19 16 2 C -0.10 -1.22 2.79 -90.62 -0.25 -1.47 16 3 C -0.15 -1.96 8.80 37.16 0.33 -1.63 16 4 C -0.12 -1.64 4.46 -26.73 -0.12 -1.76 16 5 C 0.14 2.25 2.06 -67.92 -0.14 2.11 16 6 H 0.09 1.72 5.88 -51.93 -0.31 1.41 16 7 C 0.14 2.69 5.48 -4.04 -0.02 2.66 16 8 N -0.73 -17.34 5.43 -59.91 -0.33 -17.67 16 9 C -0.24 -6.46 9.99 -15.06 -0.15 -6.61 16 10 H 0.07 1.82 7.83 -52.49 -0.41 1.40 16 11 C -0.01 -0.29 5.50 -17.43 -0.10 -0.39 16 12 N -0.93 -27.00 13.06 55.49 0.72 -26.27 16 13 Si 0.91 21.77 29.55 -169.99 -5.02 16.74 16 14 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 15 H -0.29 -7.08 7.11 56.52 0.40 -6.67 16 16 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16 17 N -0.71 -10.92 4.46 -53.80 -0.24 -11.16 16 18 C 0.52 8.68 7.15 -10.99 -0.08 8.60 16 19 O -0.52 -10.61 16.19 -14.31 -0.23 -10.84 16 20 C 0.07 0.95 2.63 -27.88 -0.07 0.88 16 21 H 0.09 1.05 6.19 -51.93 -0.32 0.73 16 22 C -0.17 -2.41 9.17 37.16 0.34 -2.07 16 23 O -0.28 -4.43 9.33 -39.30 -0.37 -4.80 16 24 C 0.14 1.81 6.61 -39.22 -0.26 1.55 16 25 C -0.21 -2.42 8.32 -39.43 -0.33 -2.75 16 26 C -0.08 -0.78 10.04 -39.61 -0.40 -1.17 16 27 C -0.16 -1.52 10.04 -39.56 -0.40 -1.92 16 28 C -0.08 -0.79 10.04 -39.61 -0.40 -1.19 16 29 C -0.15 -1.82 9.99 -39.43 -0.39 -2.22 16 30 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 32 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 33 H 0.08 1.02 6.49 -51.93 -0.34 0.68 16 34 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.06 0.90 6.73 -51.93 -0.35 0.55 16 37 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 38 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 39 H 0.04 0.68 6.73 -51.93 -0.35 0.33 16 40 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 41 H 0.39 9.76 7.34 -40.82 -0.30 9.46 16 42 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 43 H 0.40 5.67 8.59 -40.82 -0.35 5.32 16 44 H 0.09 1.28 8.11 -51.93 -0.42 0.86 16 45 H 0.08 1.28 8.14 -51.93 -0.42 0.85 16 46 H 0.07 0.85 7.12 -51.93 -0.37 0.48 16 47 H 0.13 1.31 5.51 -52.48 -0.29 1.02 16 48 H 0.12 0.92 8.06 -52.48 -0.42 0.49 16 49 H 0.12 0.83 8.06 -52.49 -0.42 0.41 16 50 H 0.13 0.90 8.06 -52.48 -0.42 0.48 16 51 H 0.13 1.48 8.06 -52.49 -0.42 1.06 16 LS Contribution 411.94 15.07 6.21 6.21 Total: -1.00 -31.90 411.94 -9.79 -41.69 By element: Atomic # 1 Polarization: 23.10 SS G_CDS: -8.43 Total: 14.66 kcal Atomic # 6 Polarization: -6.47 SS G_CDS: -2.10 Total: -8.57 kcal Atomic # 7 Polarization: -55.26 SS G_CDS: 0.16 Total: -55.10 kcal Atomic # 8 Polarization: -15.04 SS G_CDS: -0.60 Total: -15.64 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.74 kcal Total LS contribution 6.21 Total: 6.21 kcal Total: -31.90 -9.79 -41.69 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001496293543.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.944 kcal (2) G-P(sol) polarization free energy of solvation -31.905 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.849 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.786 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.691 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.636 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds