Wall clock time and date at job start Tue Mar 31 2020 18:03:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53006 * 109.47091 * 2 1 4 4 C 1.52995 * 109.47514 * 120.00126 * 2 1 3 5 5 C 1.53006 * 109.47138 * 175.25559 * 4 2 1 6 6 H 1.08999 * 109.46928 * 54.41331 * 5 4 2 7 7 C 1.53002 * 109.46979 * 294.40713 * 5 4 2 8 8 N 1.46497 * 109.46784 * 184.99773 * 7 5 4 9 9 C 1.36936 * 119.99997 * 180.02562 * 8 7 5 10 10 H 1.07994 * 119.99917 * 359.72865 * 9 8 7 11 11 C 1.38816 * 120.00197 * 179.72740 * 9 8 7 12 12 N 1.31621 * 119.99696 * 0.02562 * 11 9 8 13 13 Si 1.86800 * 120.00215 * 180.02562 * 11 9 8 14 14 H 1.48498 * 109.47411 * 89.99727 * 13 11 9 15 15 H 1.48493 * 109.47198 * 210.00251 * 13 11 9 16 16 H 1.48501 * 109.46675 * 330.00016 * 13 11 9 17 17 N 1.46504 * 109.47020 * 174.41231 * 5 4 2 18 18 C 1.34776 * 119.99710 * 272.87981 * 17 5 4 19 19 O 1.21282 * 120.00012 * 5.22253 * 18 17 5 20 20 C 1.50700 * 119.99801 * 185.23092 * 18 17 5 21 21 H 1.08996 * 109.46945 * 304.99018 * 20 18 17 22 22 C 1.53003 * 109.47161 * 64.99773 * 20 18 17 23 23 O 1.42900 * 109.46805 * 184.99328 * 20 18 17 24 24 C 1.35906 * 116.99818 * 153.65024 * 23 20 18 25 25 C 1.38729 * 120.05454 * 4.85798 * 24 23 20 26 26 C 1.38145 * 119.94400 * 179.74919 * 25 24 23 27 27 C 1.38266 * 120.05586 * 0.50254 * 26 25 24 28 28 C 1.38267 * 120.10978 * 359.77243 * 27 26 25 29 29 C 1.38144 * 120.05457 * 359.97438 * 28 27 26 30 30 H 1.09001 * 109.46993 * 299.99278 * 1 2 3 31 31 H 1.08995 * 109.47375 * 59.99494 * 1 2 3 32 32 H 1.08998 * 109.47059 * 179.97438 * 1 2 3 33 33 H 1.09001 * 109.46993 * 240.00722 * 2 1 3 34 34 H 1.08998 * 109.47460 * 305.81361 * 3 2 1 35 35 H 1.09006 * 109.46483 * 65.81424 * 3 2 1 36 36 H 1.08996 * 109.47015 * 185.81272 * 3 2 1 37 37 H 1.09004 * 109.46862 * 55.25871 * 4 2 1 38 38 H 1.08992 * 109.47308 * 295.25517 * 4 2 1 39 39 H 1.08998 * 109.47006 * 65.00414 * 7 5 4 40 40 H 1.08995 * 109.47478 * 305.00213 * 7 5 4 41 41 H 0.97005 * 120.00383 * 359.73429 * 8 7 5 42 42 H 0.97003 * 119.99676 * 179.97438 * 12 11 9 43 43 H 0.96999 * 119.99917 * 92.86985 * 17 5 4 44 44 H 1.09001 * 109.46599 * 299.99533 * 22 20 18 45 45 H 1.08994 * 109.47418 * 60.00132 * 22 20 18 46 46 H 1.09006 * 109.46712 * 180.02562 * 22 20 18 47 47 H 1.08008 * 120.02913 * 359.97438 * 25 24 23 48 48 H 1.08005 * 119.97436 * 180.23330 * 26 25 24 49 49 H 1.08001 * 119.94547 * 179.74830 * 27 26 25 50 50 H 1.08003 * 119.97177 * 179.97438 * 28 27 26 51 51 H 1.08001 * 120.02491 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 3.5654 -0.8253 1.1908 6 1 3.9921 0.1674 1.0475 7 6 3.9707 -1.7282 0.0239 8 7 5.4224 -1.9243 0.0397 9 6 6.0188 -2.7016 -0.9170 10 1 5.4184 -3.1736 -1.6806 11 6 7.3950 -2.8828 -0.9054 12 7 8.1266 -2.3079 0.0255 13 14 8.2086 -3.9426 -2.2110 14 1 8.5793 -3.0974 -3.3743 15 1 9.4296 -4.5721 -1.6473 16 1 7.2633 -5.0008 -2.6491 17 7 4.0643 -1.3949 2.4450 18 6 4.3292 -0.5894 3.4926 19 8 4.0659 0.5929 3.4303 20 6 4.9527 -1.1577 4.7413 21 1 4.3436 -1.9840 5.1078 22 6 6.3610 -1.6639 4.4233 23 8 5.0269 -0.1403 5.7421 24 6 5.0284 -0.5488 7.0383 25 6 5.0615 -1.9024 7.3401 26 6 5.0681 -2.3150 8.6585 27 6 5.0313 -1.3804 9.6768 28 6 4.9925 -0.0308 9.3785 29 6 4.9910 0.3870 8.0618 30 1 -0.3633 0.5137 0.8901 31 1 -0.3634 0.5139 -0.8899 32 1 -0.3633 -1.0276 -0.0005 33 1 1.8933 -0.5137 -0.8901 34 1 1.5942 1.9856 -0.8333 35 1 1.7641 1.9254 0.9375 36 1 3.1249 1.4443 -0.1041 37 1 1.6090 -1.7215 1.2926 38 1 1.7478 -0.1608 2.1371 39 1 3.6775 -1.2606 -0.9160 40 1 3.4727 -2.6928 0.1208 41 1 5.9618 -1.5001 0.7254 42 1 9.0883 -2.4349 0.0338 43 1 4.2039 -2.3518 2.5215 44 1 6.3043 -2.4399 3.6600 45 1 6.9701 -0.8376 4.0569 46 1 6.8118 -2.0754 5.3265 47 1 5.0857 -2.6331 6.5450 48 1 5.0977 -3.3686 8.8941 49 1 5.0324 -1.7050 10.7068 50 1 4.9633 0.6973 10.1756 51 1 4.9602 1.4412 7.8293 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001496293543.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:03:07 Heat of formation + Delta-G solvation = -70.756429 kcal Electronic energy + Delta-G solvation = -29357.036072 eV Core-core repulsion = 25448.773115 eV Total energy + Delta-G solvation = -3908.262958 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.72391 -40.60276 -38.78000 -38.00888 -36.35729 -35.22864 -33.58670 -32.64423 -31.73899 -30.66927 -30.18785 -28.02248 -27.20923 -25.94619 -24.58396 -23.85640 -23.31803 -22.40227 -21.34764 -20.61002 -19.42687 -19.23255 -18.35511 -17.49374 -16.89974 -16.84471 -16.65997 -16.31712 -16.07168 -15.58998 -15.51712 -15.18240 -15.13638 -14.99117 -14.49621 -14.39129 -14.23121 -14.10281 -13.84969 -13.61890 -13.39963 -13.30027 -13.18655 -12.94986 -12.87220 -12.76564 -12.62933 -12.44843 -12.22545 -12.11197 -12.01412 -11.92045 -11.76235 -11.73501 -11.55091 -11.37170 -10.98529 -10.77629 -10.05220 -9.94163 -9.18585 -8.98367 -7.92068 -5.21198 0.39778 0.48396 1.43177 1.49314 1.50598 1.58463 1.61432 2.55593 2.59034 2.85292 3.41603 3.47395 3.65566 3.73449 3.82614 3.91671 3.94724 4.01115 4.05168 4.16795 4.20362 4.29465 4.39441 4.41434 4.52073 4.56822 4.60306 4.63762 4.75744 4.75879 4.81233 4.90078 4.94755 5.00136 5.03688 5.09445 5.11423 5.12211 5.14355 5.34255 5.37155 5.46357 5.47955 5.49099 5.54129 5.56437 5.60862 5.85354 6.28135 6.34562 6.51520 7.13582 7.36175 8.08919 8.33346 9.30425 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.008387 B = 0.003415 C = 0.002569 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3337.631416 B = 8196.508965 C =10896.708056 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.096 4.096 3 C -0.146 4.146 4 C -0.108 4.108 5 C 0.146 3.854 6 H 0.062 0.938 7 C 0.148 3.852 8 N -0.742 5.742 9 C -0.242 4.242 10 H 0.078 0.922 11 C -0.070 4.070 12 N -0.964 5.964 13 Si 0.969 3.031 14 H -0.293 1.293 15 H -0.297 1.297 16 H -0.267 1.267 17 N -0.698 5.698 18 C 0.516 3.484 19 O -0.567 6.567 20 C 0.076 3.924 21 H 0.126 0.874 22 C -0.163 4.163 23 O -0.313 6.313 24 C 0.104 3.896 25 C -0.220 4.220 26 C -0.082 4.082 27 C -0.161 4.161 28 C -0.081 4.081 29 C -0.173 4.173 30 H 0.052 0.948 31 H 0.063 0.937 32 H 0.063 0.937 33 H 0.075 0.925 34 H 0.066 0.934 35 H 0.047 0.953 36 H 0.035 0.965 37 H 0.082 0.918 38 H 0.056 0.944 39 H 0.039 0.961 40 H 0.042 0.958 41 H 0.374 0.626 42 H 0.249 0.751 43 H 0.412 0.588 44 H 0.087 0.913 45 H 0.048 0.952 46 H 0.090 0.910 47 H 0.141 0.859 48 H 0.151 0.849 49 H 0.151 0.849 50 H 0.153 0.847 51 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.756 -0.911 15.460 20.064 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.115 4.115 3 C -0.203 4.203 4 C -0.147 4.147 5 C 0.041 3.959 6 H 0.080 0.920 7 C 0.021 3.979 8 N -0.385 5.385 9 C -0.373 4.373 10 H 0.096 0.904 11 C -0.263 4.263 12 N -0.615 5.615 13 Si 0.798 3.202 14 H -0.221 1.221 15 H -0.224 1.224 16 H -0.192 1.192 17 N -0.350 5.350 18 C 0.302 3.698 19 O -0.445 6.445 20 C 0.017 3.983 21 H 0.143 0.857 22 C -0.221 4.221 23 O -0.227 6.227 24 C 0.059 3.941 25 C -0.239 4.239 26 C -0.100 4.100 27 C -0.179 4.179 28 C -0.099 4.099 29 C -0.192 4.192 30 H 0.071 0.929 31 H 0.082 0.918 32 H 0.082 0.918 33 H 0.093 0.907 34 H 0.085 0.915 35 H 0.066 0.934 36 H 0.054 0.946 37 H 0.100 0.900 38 H 0.074 0.926 39 H 0.057 0.943 40 H 0.060 0.940 41 H 0.206 0.794 42 H 0.058 0.942 43 H 0.248 0.752 44 H 0.105 0.895 45 H 0.067 0.933 46 H 0.109 0.891 47 H 0.159 0.841 48 H 0.169 0.831 49 H 0.169 0.831 50 H 0.171 0.829 51 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -12.933 0.009 15.162 19.928 hybrid contribution 1.305 -0.532 -0.731 1.588 sum -11.627 -0.524 14.431 18.540 Atomic orbital electron populations 1.21774 0.93477 1.02346 1.02025 1.21135 0.96964 0.95732 0.97630 1.21852 1.00160 0.96686 1.01645 1.21894 0.92676 1.01630 0.98538 1.21213 0.94987 0.97169 0.82505 0.91986 1.21138 0.84647 0.96764 0.95347 1.42517 1.02487 1.59350 1.34131 1.19589 0.90692 1.21290 1.05766 0.90406 1.25480 0.97063 1.02771 1.00959 1.69817 1.04957 1.49722 1.36967 0.85213 0.77860 0.78571 0.78514 1.22100 1.22425 1.19216 1.45766 1.65998 1.11306 1.11956 1.20494 0.77743 0.86465 0.85123 1.90680 1.53571 1.17599 1.82668 1.22209 0.99139 0.90754 0.86223 0.85696 1.22205 0.93825 1.02053 1.03985 1.86178 1.88320 1.35171 1.13017 1.19448 0.97318 0.94184 0.83159 1.21543 1.08902 0.93929 0.99479 1.21341 0.96068 1.01288 0.91302 1.21473 1.02982 0.92749 1.00678 1.21300 0.96517 0.97218 0.94866 1.20698 1.07288 0.99272 0.91947 0.92892 0.91797 0.91756 0.90685 0.91482 0.93413 0.94556 0.89957 0.92558 0.94319 0.94050 0.79352 0.94199 0.75163 0.89465 0.93302 0.89145 0.84130 0.83128 0.83093 0.82910 0.85771 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.65 9.19 71.98 0.66 -1.99 16 2 C -0.10 -2.32 2.79 -10.79 -0.03 -2.35 16 3 C -0.15 -3.89 8.80 71.98 0.63 -3.26 16 4 C -0.11 -2.88 4.46 30.59 0.14 -2.74 16 5 C 0.15 4.81 2.06 44.99 0.09 4.91 16 6 H 0.06 2.45 5.88 -2.39 -0.01 2.44 16 7 C 0.15 5.42 5.48 86.38 0.47 5.90 16 8 N -0.74 -35.41 5.43 -343.46 -1.87 -37.28 16 9 C -0.24 -12.78 9.99 84.03 0.84 -11.94 16 10 H 0.08 3.93 7.83 -2.91 -0.02 3.91 16 11 C -0.07 -3.87 5.50 84.86 0.47 -3.40 16 12 N -0.96 -57.08 13.06 21.65 0.28 -56.80 16 13 Si 0.97 44.78 29.55 68.60 2.03 46.81 16 14 H -0.29 -13.62 7.11 99.48 0.71 -12.91 16 15 H -0.30 -13.92 7.11 99.48 0.71 -13.22 16 16 H -0.27 -11.57 7.11 99.48 0.71 -10.87 16 17 N -0.70 -21.89 4.46 -442.51 -1.97 -23.87 16 18 C 0.52 17.86 7.15 87.66 0.63 18.49 16 19 O -0.57 -24.24 16.19 15.96 0.26 -23.98 16 20 C 0.08 2.18 2.63 29.85 0.08 2.26 16 21 H 0.13 2.71 6.19 -2.39 -0.01 2.69 16 22 C -0.16 -4.68 9.17 71.98 0.66 -4.02 16 23 O -0.31 -10.19 9.33 -73.50 -0.69 -10.87 16 24 C 0.10 2.78 6.61 22.50 0.15 2.93 16 25 C -0.22 -4.69 8.32 22.37 0.19 -4.50 16 26 C -0.08 -1.38 10.04 22.25 0.22 -1.15 16 27 C -0.16 -2.49 10.04 22.28 0.22 -2.26 16 28 C -0.08 -1.44 10.04 22.25 0.22 -1.21 16 29 C -0.17 -4.18 9.99 22.36 0.22 -3.95 16 30 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 31 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 32 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 33 H 0.07 1.87 6.49 -2.39 -0.02 1.85 16 34 H 0.07 1.52 8.14 -2.39 -0.02 1.51 16 35 H 0.05 1.31 8.14 -2.38 -0.02 1.29 16 36 H 0.04 1.12 6.73 -2.39 -0.02 1.11 16 37 H 0.08 1.88 8.14 -2.38 -0.02 1.86 16 38 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 39 H 0.04 1.44 6.73 -2.39 -0.02 1.42 16 40 H 0.04 1.41 8.14 -2.39 -0.02 1.40 16 41 H 0.37 19.47 7.34 -92.70 -0.68 18.79 16 42 H 0.25 14.46 8.31 -92.71 -0.77 13.69 16 43 H 0.41 11.44 8.59 -92.71 -0.80 10.64 16 44 H 0.09 2.52 8.11 -2.39 -0.02 2.50 16 45 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 46 H 0.09 2.18 7.12 -2.38 -0.02 2.17 16 47 H 0.14 2.57 5.51 -2.91 -0.02 2.55 16 48 H 0.15 1.66 8.06 -2.91 -0.02 1.64 16 49 H 0.15 1.42 8.06 -2.91 -0.02 1.40 16 50 H 0.15 1.80 8.06 -2.91 -0.02 1.78 16 51 H 0.12 2.99 8.06 -2.91 -0.02 2.97 16 Total: -1.00 -70.65 411.94 3.36 -67.29 By element: Atomic # 1 Polarization: 47.56 SS G_CDS: -0.55 Total: 47.01 kcal Atomic # 6 Polarization: -14.17 SS G_CDS: 5.87 Total: -8.30 kcal Atomic # 7 Polarization: -114.39 SS G_CDS: -3.56 Total: -117.94 kcal Atomic # 8 Polarization: -34.43 SS G_CDS: -0.43 Total: -34.86 kcal Atomic # 14 Polarization: 44.78 SS G_CDS: 2.03 Total: 46.81 kcal Total: -70.65 3.36 -67.29 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001496293543.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.469 kcal (2) G-P(sol) polarization free energy of solvation -70.652 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.121 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.365 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.287 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.756 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds