Wall clock time and date at job start Tue Mar 31 2020 18:52:29
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53006 * 1
3 3 N 1.46503 * 109.46697 * 2 1
4 4 C 1.46492 * 120.00421 * 269.99695 * 3 2 1
5 5 C 1.53000 * 109.47384 * 270.00603 * 4 3 2
6 6 N 1.46502 * 109.46989 * 180.02562 * 5 4 3
7 7 C 1.36937 * 119.99655 * 179.97438 * 6 5 4
8 8 H 1.08000 * 120.00463 * 359.97438 * 7 6 5
9 9 C 1.38813 * 119.99973 * 179.97438 * 7 6 5
10 10 N 1.31625 * 119.99981 * 359.97438 * 9 7 6
11 11 Si 1.86803 * 120.00195 * 180.02562 * 9 7 6
12 12 H 1.48495 * 109.46887 * 89.99840 * 11 9 7
13 13 H 1.48499 * 109.47012 * 209.99698 * 11 9 7
14 14 H 1.48502 * 109.46911 * 330.00045 * 11 9 7
15 15 C 1.34785 * 119.99472 * 90.00429 * 3 2 1
16 16 O 1.21280 * 119.99368 * 179.97438 * 15 3 2
17 17 C 1.50694 * 119.99900 * 359.97438 * 15 3 2
18 18 O 1.42902 * 109.46848 * 180.02562 * 17 15 3
19 19 C 1.35905 * 116.99941 * 180.02562 * 18 17 15
20 20 C 1.38738 * 120.05455 * 179.97438 * 19 18 17
21 21 C 1.38139 * 119.94262 * 180.02562 * 20 19 18
22 22 C 1.38264 * 120.05734 * 0.02562 * 21 20 19
23 23 C 1.50699 * 119.94544 * 179.97438 * 22 21 20
24 24 C 1.53000 * 109.47083 * 239.99774 * 23 22 21
25 25 C 1.52997 * 109.47078 * 119.99901 * 23 22 21
26 26 C 1.38274 * 120.11129 * 0.25057 * 22 21 20
27 27 C 1.38140 * 120.05195 * 359.45387 * 26 22 21
28 28 H 1.08994 * 109.47341 * 299.99800 * 1 2 3
29 29 H 1.08999 * 109.46856 * 60.00055 * 1 2 3
30 30 H 1.09002 * 109.46811 * 179.97438 * 1 2 3
31 31 H 1.09006 * 109.47111 * 240.00569 * 2 1 3
32 32 H 1.08987 * 109.47054 * 120.00363 * 2 1 3
33 33 H 1.09001 * 109.47202 * 30.00595 * 4 3 2
34 34 H 1.09002 * 109.47435 * 150.00233 * 4 3 2
35 35 H 1.09000 * 109.47148 * 299.99642 * 5 4 3
36 36 H 1.08997 * 109.47407 * 59.99831 * 5 4 3
37 37 H 0.96999 * 120.00067 * 359.97438 * 6 5 4
38 38 H 0.96995 * 119.99949 * 179.97438 * 10 9 7
39 39 H 1.08994 * 109.47457 * 59.99941 * 17 15 3
40 40 H 1.09006 * 109.47323 * 300.00025 * 17 15 3
41 41 H 1.07997 * 120.02456 * 0.02562 * 20 19 18
42 42 H 1.07998 * 119.97261 * 180.02562 * 21 20 19
43 43 H 1.09002 * 109.46959 * 359.97438 * 23 22 21
44 44 H 1.09001 * 109.47194 * 179.97438 * 24 23 22
45 45 H 1.08992 * 109.47399 * 299.99938 * 24 23 22
46 46 H 1.09004 * 109.46724 * 60.00424 * 24 23 22
47 47 H 1.09002 * 109.47153 * 60.00207 * 25 23 22
48 48 H 1.08998 * 109.47533 * 179.97438 * 25 23 22
49 49 H 1.08996 * 109.47853 * 300.00179 * 25 23 22
50 50 H 1.08000 * 119.96815 * 179.70256 * 26 22 21
51 51 H 1.08005 * 120.02747 * 180.24921 * 27 26 22
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5301 0.0000 0.0000
3 7 2.0183 1.3813 0.0000
4 6 2.2625 2.0719 -1.2686
5 6 3.7075 1.8316 -1.7103
6 7 3.9518 2.5228 -2.9787
7 6 5.1842 2.4508 -3.5713
8 1 5.9762 1.8848 -3.1035
9 6 5.4156 3.1053 -4.7734
10 7 4.4503 3.7947 -5.3439
11 14 7.0965 3.0066 -5.5822
12 1 7.1378 1.8373 -6.4967
13 1 7.3473 4.2491 -6.3558
14 1 8.1405 2.8548 -4.5371
15 6 2.2429 2.0165 1.1673
16 8 2.6476 3.1599 1.1673
17 6 1.9913 1.3062 2.4723
18 8 2.3004 2.1818 3.5585
19 6 2.1273 1.6919 4.8143
20 6 2.4088 2.4876 5.9155
21 6 2.2325 1.9872 7.1909
22 6 1.7766 0.6943 7.3707
23 6 1.5858 0.1507 8.7632
24 6 2.4774 -1.0773 8.9579
25 6 0.1212 -0.2461 8.9595
26 6 1.5008 -0.1027 6.2749
27 6 1.6696 0.3952 4.9974
28 1 -0.3634 0.5138 0.8899
29 1 -0.3633 0.5138 -0.8900
30 1 -0.3633 -1.0277 -0.0005
31 1 1.8934 -0.5138 -0.8901
32 1 1.8933 -0.5138 0.8898
33 1 1.5817 1.6879 -2.0283
34 1 2.0955 3.1412 -1.1383
35 1 4.3883 2.2157 -0.9507
36 1 3.8745 0.7624 -1.8407
37 1 3.2406 3.0314 -3.3987
38 1 4.6121 4.2523 -6.1836
39 1 2.6212 0.4185 2.5302
40 1 0.9432 1.0123 2.5299
41 1 2.7653 3.4974 5.7755
42 1 2.4510 2.6063 8.0484
43 1 1.8563 0.9150 9.4918
44 1 2.3397 -1.4702 9.9653
45 1 2.2072 -1.8416 8.2294
46 1 3.5207 -0.7945 8.8181
47 1 -0.1489 -1.0105 8.2309
48 1 -0.0168 -0.6397 9.9665
49 1 -0.5141 0.6287 8.8208
50 1 1.1494 -1.1138 6.4180
51 1 1.4503 -0.2264 4.1418
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001497417206.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 18:52:29
Heat of formation + Delta-G solvation = -43.857277 kcal
Electronic energy + Delta-G solvation = -28048.953088 eV
Core-core repulsion = 24141.856566 eV
Total energy + Delta-G solvation = -3907.096523 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 334.204 amu
Computer time = 0.82 seconds
Orbital eigenvalues (eV)
-40.72549 -39.77212 -38.20905 -36.23368 -35.07989 -34.62284 -31.90905 -31.35060
-30.38940 -29.97439 -28.65615 -27.52959 -26.91006 -23.82770 -23.67575 -23.54656
-22.57701 -21.46512 -20.37191 -19.13848 -18.67407 -17.17718 -17.12327 -16.57048
-16.50410 -15.78035 -15.64162 -14.98944 -14.72406 -14.49156 -14.42424 -14.06613
-13.93102 -13.83634 -13.65421 -13.56935 -13.32956 -13.25829 -12.96414 -12.82286
-12.72626 -12.65325 -12.40115 -12.00643 -11.68465 -11.53558 -11.38274 -11.30208
-11.15246 -11.02569 -10.99242 -10.91923 -10.87663 -10.67685 -10.10183 -9.80058
-9.65505 -9.28029 -8.86172 -8.62101 -8.32562 -6.92236 -5.74854 -3.04176
1.06297 1.14504 2.41090 2.57809 3.37743 3.45422 3.46590 3.50674
3.52941 4.24121 4.32234 4.42182 4.50416 4.62181 4.65283 4.70844
4.73749 4.81235 4.82050 4.99886 5.04172 5.05324 5.18670 5.19104
5.22500 5.31980 5.43283 5.47586 5.48735 5.51752 5.56014 5.58178
5.64367 5.73967 5.78588 5.82541 5.84233 5.96451 6.01967 6.02977
6.09285 6.11795 6.35948 6.45614 6.53083 6.71855 6.88960 7.12935
7.38923 7.71714 8.17525 8.43538 9.54519 10.10325 10.45450 11.48002
Molecular weight = 334.20amu
Principal moments of inertia in cm(-1)
A = 0.020933 B = 0.001849 C = 0.001785
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1337.299856 B =15140.762791 C =15684.442570
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.173 4.173
2 C 0.099 3.901
3 N -0.604 5.604
4 C 0.110 3.890
5 C 0.142 3.858
6 N -0.730 5.730
7 C -0.239 4.239
8 H 0.070 0.930
9 C -0.014 4.014
10 N -0.933 5.933
11 Si 0.909 3.091
12 H -0.290 1.290
13 H -0.291 1.291
14 H -0.282 1.282
15 C 0.513 3.487
16 O -0.508 6.508
17 C 0.044 3.956
18 O -0.289 6.289
19 C 0.129 3.871
20 C -0.146 4.146
21 C -0.077 4.077
22 C -0.118 4.118
23 C -0.052 4.052
24 C -0.145 4.145
25 C -0.144 4.144
26 C -0.074 4.074
27 C -0.209 4.209
28 H 0.054 0.946
29 H 0.064 0.936
30 H 0.069 0.931
31 H 0.089 0.911
32 H 0.074 0.926
33 H 0.080 0.920
34 H 0.086 0.914
35 H 0.023 0.977
36 H 0.018 0.982
37 H 0.384 0.616
38 H 0.255 0.745
39 H 0.091 0.909
40 H 0.091 0.909
41 H 0.133 0.867
42 H 0.128 0.872
43 H 0.076 0.924
44 H 0.056 0.944
45 H 0.056 0.944
46 H 0.056 0.944
47 H 0.056 0.944
48 H 0.056 0.944
49 H 0.056 0.944
50 H 0.123 0.877
51 H 0.127 0.873
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -12.159 -13.065 28.522 33.646
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.232 4.232
2 C -0.024 4.024
3 N -0.339 5.339
4 C -0.012 4.012
5 C 0.014 3.986
6 N -0.375 5.375
7 C -0.370 4.370
8 H 0.088 0.912
9 C -0.210 4.210
10 N -0.582 5.582
11 Si 0.740 3.260
12 H -0.217 1.217
13 H -0.217 1.217
14 H -0.207 1.207
15 C 0.298 3.702
16 O -0.381 6.381
17 C -0.035 4.035
18 O -0.201 6.201
19 C 0.083 3.917
20 C -0.164 4.164
21 C -0.095 4.095
22 C -0.119 4.119
23 C -0.071 4.071
24 C -0.202 4.202
25 C -0.202 4.202
26 C -0.092 4.092
27 C -0.227 4.227
28 H 0.073 0.927
29 H 0.084 0.916
30 H 0.087 0.913
31 H 0.108 0.892
32 H 0.093 0.907
33 H 0.098 0.902
34 H 0.105 0.895
35 H 0.041 0.959
36 H 0.036 0.964
37 H 0.218 0.782
38 H 0.065 0.935
39 H 0.109 0.891
40 H 0.108 0.892
41 H 0.151 0.849
42 H 0.146 0.854
43 H 0.094 0.906
44 H 0.075 0.925
45 H 0.075 0.925
46 H 0.075 0.925
47 H 0.075 0.925
48 H 0.075 0.925
49 H 0.075 0.925
50 H 0.141 0.859
51 H 0.145 0.855
Dipole moment (debyes) X Y Z Total
from point charges -11.693 -12.275 28.421 33.093
hybrid contribution 0.585 -0.218 -0.818 1.029
sum -11.107 -12.492 27.603 32.270
Atomic orbital electron populations
1.22247 0.95696 1.02411 1.02814 1.21665 0.94515 0.82497 1.03761
1.47843 1.65938 1.14292 1.05854 1.21736 0.98301 0.98491 0.82693
1.20912 0.92672 0.95546 0.89502 1.42199 1.12907 1.60769 1.21601
1.19208 0.89282 1.26139 1.02341 0.91187 1.24754 0.97874 1.00300
0.98055 1.69662 1.31582 1.37374 1.19551 0.86155 0.83654 0.76962
0.79225 1.21716 1.21700 1.20749 1.19931 0.78740 0.86971 0.84526
1.90791 1.43299 1.17296 1.86723 1.22578 1.02156 0.93320 0.85415
1.86186 1.82318 1.40125 1.11444 1.19096 0.95681 0.92488 0.84446
1.20467 1.05072 1.00759 0.90123 1.20868 0.97660 0.94890 0.96119
1.19756 1.02590 0.94446 0.95067 1.20052 0.95971 0.97887 0.93160
1.21871 0.99653 0.97158 1.01534 1.21866 0.95232 1.01541 1.01534
1.20724 0.97941 0.99290 0.91244 1.21238 1.07460 0.95420 0.98621
0.92685 0.91644 0.91257 0.89211 0.90740 0.90193 0.89549 0.95893
0.96397 0.78245 0.93488 0.89092 0.89153 0.84928 0.85436 0.90560
0.92488 0.92517 0.92482 0.92535 0.92493 0.92513 0.85921 0.85503
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.17 -1.32 10.24 37.16 0.38 -0.94 16
2 C 0.10 0.91 5.93 -4.04 -0.02 0.88 16
3 N -0.60 -8.30 2.47 -173.69 -0.43 -8.73 16
4 C 0.11 1.88 5.52 -4.05 -0.02 1.85 16
5 C 0.14 3.02 6.58 -4.04 -0.03 3.00 16
6 N -0.73 -19.22 5.60 -59.91 -0.34 -19.56 16
7 C -0.24 -6.92 9.99 -15.06 -0.15 -7.07 16
8 H 0.07 1.98 7.83 -52.49 -0.41 1.57 16
9 C -0.01 -0.41 5.50 -17.43 -0.10 -0.51 16
10 N -0.93 -28.75 13.06 55.49 0.72 -28.02 16
11 Si 0.91 22.91 29.55 -169.99 -5.02 17.89 16
12 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16
13 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16
14 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16
15 C 0.51 7.88 7.75 -10.98 -0.09 7.80 16
16 O -0.51 -10.44 16.08 -14.35 -0.23 -10.67 16
17 C 0.04 0.49 3.77 36.00 0.14 0.63 16
18 O -0.29 -3.99 9.67 -39.35 -0.38 -4.37 16
19 C 0.13 1.47 6.69 -39.22 -0.26 1.21 16
20 C -0.15 -1.54 9.99 -39.43 -0.39 -1.93 16
21 C -0.08 -0.66 9.66 -39.61 -0.38 -1.04 16
22 C -0.12 -0.93 4.78 -104.60 -0.50 -1.43 16
23 C -0.05 -0.31 3.09 -91.77 -0.28 -0.59 16
24 C -0.14 -0.78 9.00 37.16 0.33 -0.45 16
25 C -0.14 -0.76 9.01 37.16 0.33 -0.43 16
26 C -0.07 -0.59 8.70 -39.60 -0.34 -0.93 16
27 C -0.21 -1.89 9.04 -39.44 -0.36 -2.25 16
28 H 0.05 0.41 7.22 -51.93 -0.37 0.03 16
29 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16
30 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16
31 H 0.09 0.83 8.07 -51.93 -0.42 0.41 16
32 H 0.07 0.50 6.44 -51.94 -0.33 0.17 16
33 H 0.08 1.23 8.07 -51.93 -0.42 0.82 16
34 H 0.09 1.66 7.42 -51.93 -0.39 1.28 16
35 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16
36 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16
37 H 0.38 10.47 7.67 -40.82 -0.31 10.16 16
38 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16
39 H 0.09 0.80 6.92 -51.93 -0.36 0.44 16
40 H 0.09 0.76 6.71 -51.93 -0.35 0.41 16
41 H 0.13 1.36 8.06 -52.49 -0.42 0.94 16
42 H 0.13 0.82 7.94 -52.49 -0.42 0.40 16
43 H 0.08 0.41 7.87 -51.93 -0.41 0.01 16
44 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16
45 H 0.06 0.30 7.37 -51.93 -0.38 -0.08 16
46 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16
47 H 0.06 0.29 7.40 -51.93 -0.38 -0.10 16
48 H 0.06 0.25 8.14 -51.93 -0.42 -0.18 16
49 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16
50 H 0.12 0.74 7.09 -52.49 -0.37 0.37 16
51 H 0.13 0.88 6.30 -52.48 -0.33 0.55 16
LS Contribution 414.84 15.07 6.25 6.25
Total: -1.00 -35.68 414.84 -9.77 -45.45
By element:
Atomic # 1 Polarization: 12.56 SS G_CDS: -8.60 Total: 3.96 kcal
Atomic # 6 Polarization: -0.46 SS G_CDS: -1.74 Total: -2.20 kcal
Atomic # 7 Polarization: -56.27 SS G_CDS: -0.04 Total: -56.31 kcal
Atomic # 8 Polarization: -14.43 SS G_CDS: -0.61 Total: -15.04 kcal
Atomic # 14 Polarization: 22.91 SS G_CDS: -5.02 Total: 17.89 kcal
Total LS contribution 6.25 Total: 6.25 kcal
Total: -35.68 -9.77 -45.45 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001497417206.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 1.595 kcal
(2) G-P(sol) polarization free energy of solvation -35.685 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.090 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.767 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.452 kcal
(6) G-S(sol) free energy of system = (1) + (5) -43.857 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.82 seconds