Wall clock time and date at job start Tue Mar 31 2020 18:52:28
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53006 * 1
3 3 N 1.46503 * 109.46697 * 2 1
4 4 C 1.46492 * 120.00421 * 269.99695 * 3 2 1
5 5 C 1.53000 * 109.47384 * 270.00603 * 4 3 2
6 6 N 1.46502 * 109.46989 * 180.02562 * 5 4 3
7 7 C 1.36937 * 119.99655 * 179.97438 * 6 5 4
8 8 H 1.08000 * 120.00463 * 359.97438 * 7 6 5
9 9 C 1.38813 * 119.99973 * 179.97438 * 7 6 5
10 10 N 1.31625 * 119.99981 * 359.97438 * 9 7 6
11 11 Si 1.86803 * 120.00195 * 180.02562 * 9 7 6
12 12 H 1.48495 * 109.46887 * 89.99840 * 11 9 7
13 13 H 1.48499 * 109.47012 * 209.99698 * 11 9 7
14 14 H 1.48502 * 109.46911 * 330.00045 * 11 9 7
15 15 C 1.34785 * 119.99472 * 90.00429 * 3 2 1
16 16 O 1.21280 * 119.99368 * 179.97438 * 15 3 2
17 17 C 1.50694 * 119.99900 * 359.97438 * 15 3 2
18 18 O 1.42902 * 109.46848 * 180.02562 * 17 15 3
19 19 C 1.35905 * 116.99941 * 180.02562 * 18 17 15
20 20 C 1.38738 * 120.05455 * 179.97438 * 19 18 17
21 21 C 1.38139 * 119.94262 * 180.02562 * 20 19 18
22 22 C 1.38264 * 120.05734 * 0.02562 * 21 20 19
23 23 C 1.50699 * 119.94544 * 179.97438 * 22 21 20
24 24 C 1.53000 * 109.47083 * 239.99774 * 23 22 21
25 25 C 1.52997 * 109.47078 * 119.99901 * 23 22 21
26 26 C 1.38274 * 120.11129 * 0.25057 * 22 21 20
27 27 C 1.38140 * 120.05195 * 359.45387 * 26 22 21
28 28 H 1.08994 * 109.47341 * 299.99800 * 1 2 3
29 29 H 1.08999 * 109.46856 * 60.00055 * 1 2 3
30 30 H 1.09002 * 109.46811 * 179.97438 * 1 2 3
31 31 H 1.09006 * 109.47111 * 240.00569 * 2 1 3
32 32 H 1.08987 * 109.47054 * 120.00363 * 2 1 3
33 33 H 1.09001 * 109.47202 * 30.00595 * 4 3 2
34 34 H 1.09002 * 109.47435 * 150.00233 * 4 3 2
35 35 H 1.09000 * 109.47148 * 299.99642 * 5 4 3
36 36 H 1.08997 * 109.47407 * 59.99831 * 5 4 3
37 37 H 0.96999 * 120.00067 * 359.97438 * 6 5 4
38 38 H 0.96995 * 119.99949 * 179.97438 * 10 9 7
39 39 H 1.08994 * 109.47457 * 59.99941 * 17 15 3
40 40 H 1.09006 * 109.47323 * 300.00025 * 17 15 3
41 41 H 1.07997 * 120.02456 * 0.02562 * 20 19 18
42 42 H 1.07998 * 119.97261 * 180.02562 * 21 20 19
43 43 H 1.09002 * 109.46959 * 359.97438 * 23 22 21
44 44 H 1.09001 * 109.47194 * 179.97438 * 24 23 22
45 45 H 1.08992 * 109.47399 * 299.99938 * 24 23 22
46 46 H 1.09004 * 109.46724 * 60.00424 * 24 23 22
47 47 H 1.09002 * 109.47153 * 60.00207 * 25 23 22
48 48 H 1.08998 * 109.47533 * 179.97438 * 25 23 22
49 49 H 1.08996 * 109.47853 * 300.00179 * 25 23 22
50 50 H 1.08000 * 119.96815 * 179.70256 * 26 22 21
51 51 H 1.08005 * 120.02747 * 180.24921 * 27 26 22
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5301 0.0000 0.0000
3 7 2.0183 1.3813 0.0000
4 6 2.2625 2.0719 -1.2686
5 6 3.7075 1.8316 -1.7103
6 7 3.9518 2.5228 -2.9787
7 6 5.1842 2.4508 -3.5713
8 1 5.9762 1.8848 -3.1035
9 6 5.4156 3.1053 -4.7734
10 7 4.4503 3.7947 -5.3439
11 14 7.0965 3.0066 -5.5822
12 1 7.1378 1.8373 -6.4967
13 1 7.3473 4.2491 -6.3558
14 1 8.1405 2.8548 -4.5371
15 6 2.2429 2.0165 1.1673
16 8 2.6476 3.1599 1.1673
17 6 1.9913 1.3062 2.4723
18 8 2.3004 2.1818 3.5585
19 6 2.1273 1.6919 4.8143
20 6 2.4088 2.4876 5.9155
21 6 2.2325 1.9872 7.1909
22 6 1.7766 0.6943 7.3707
23 6 1.5858 0.1507 8.7632
24 6 2.4774 -1.0773 8.9579
25 6 0.1212 -0.2461 8.9595
26 6 1.5008 -0.1027 6.2749
27 6 1.6696 0.3952 4.9974
28 1 -0.3634 0.5138 0.8899
29 1 -0.3633 0.5138 -0.8900
30 1 -0.3633 -1.0277 -0.0005
31 1 1.8934 -0.5138 -0.8901
32 1 1.8933 -0.5138 0.8898
33 1 1.5817 1.6879 -2.0283
34 1 2.0955 3.1412 -1.1383
35 1 4.3883 2.2157 -0.9507
36 1 3.8745 0.7624 -1.8407
37 1 3.2406 3.0314 -3.3987
38 1 4.6121 4.2523 -6.1836
39 1 2.6212 0.4185 2.5302
40 1 0.9432 1.0123 2.5299
41 1 2.7653 3.4974 5.7755
42 1 2.4510 2.6063 8.0484
43 1 1.8563 0.9150 9.4918
44 1 2.3397 -1.4702 9.9653
45 1 2.2072 -1.8416 8.2294
46 1 3.5207 -0.7945 8.8181
47 1 -0.1489 -1.0105 8.2309
48 1 -0.0168 -0.6397 9.9665
49 1 -0.5141 0.6287 8.8208
50 1 1.1494 -1.1138 6.4180
51 1 1.4503 -0.2264 4.1418
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001497417206.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 18:52:28
Heat of formation + Delta-G solvation = -64.770567 kcal
Electronic energy + Delta-G solvation = -28049.859957 eV
Core-core repulsion = 24141.856566 eV
Total energy + Delta-G solvation = -3908.003391 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 334.204 amu
Computer time = 0.99 seconds
Orbital eigenvalues (eV)
-41.63245 -40.74474 -38.99207 -37.55909 -36.42967 -35.64781 -33.70329 -32.04043
-31.63192 -30.90784 -29.64746 -28.27471 -27.91238 -25.64341 -24.42661 -24.23706
-23.66853 -22.90321 -20.92731 -20.30438 -19.53452 -19.12963 -18.13563 -17.61550
-17.42143 -16.88397 -16.48308 -16.29587 -15.93171 -15.48037 -15.32926 -15.20891
-15.10982 -14.95268 -14.83923 -14.51125 -14.33300 -14.21332 -13.98116 -13.72613
-13.40879 -13.32319 -13.10474 -12.96966 -12.92647 -12.80373 -12.66332 -12.37000
-12.22932 -12.15624 -12.08653 -11.99134 -11.89359 -11.68798 -11.65896 -11.45545
-11.00668 -10.92945 -9.94403 -9.84177 -9.09107 -9.04171 -7.99897 -5.30937
0.40232 0.45040 1.38822 1.43585 1.45647 1.47681 1.56393 2.43210
2.56136 2.79540 3.29561 3.33624 3.76748 3.80730 3.87993 3.95668
4.00564 4.03075 4.08046 4.12868 4.18642 4.19958 4.39230 4.40327
4.45032 4.49117 4.52391 4.57774 4.61066 4.72421 4.85375 4.87232
4.93118 4.99806 5.03908 5.06009 5.06550 5.10563 5.17322 5.34643
5.37498 5.39104 5.40620 5.45411 5.46451 5.48929 5.75693 5.83940
6.21258 6.23733 6.42419 7.01886 7.27618 7.98926 8.24403 9.23343
Molecular weight = 334.20amu
Principal moments of inertia in cm(-1)
A = 0.020933 B = 0.001849 C = 0.001785
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1337.299856 B =15140.762791 C =15684.442570
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.169 4.169
2 C 0.090 3.910
3 N -0.598 5.598
4 C 0.124 3.876
5 C 0.148 3.852
6 N -0.743 5.743
7 C -0.253 4.253
8 H 0.073 0.927
9 C -0.073 4.073
10 N -0.967 5.967
11 Si 0.979 3.021
12 H -0.280 1.280
13 H -0.293 1.293
14 H -0.273 1.273
15 C 0.505 3.495
16 O -0.575 6.575
17 C 0.051 3.949
18 O -0.325 6.325
19 C 0.101 3.899
20 C -0.168 4.168
21 C -0.082 4.082
22 C -0.117 4.117
23 C -0.052 4.052
24 C -0.144 4.144
25 C -0.143 4.143
26 C -0.075 4.075
27 C -0.206 4.206
28 H 0.059 0.941
29 H 0.048 0.952
30 H 0.097 0.903
31 H 0.092 0.908
32 H 0.108 0.892
33 H 0.100 0.900
34 H 0.057 0.943
35 H -0.003 1.003
36 H 0.035 0.965
37 H 0.376 0.624
38 H 0.254 0.746
39 H 0.122 0.878
40 H 0.125 0.875
41 H 0.121 0.879
42 H 0.144 0.856
43 H 0.080 0.920
44 H 0.067 0.933
45 H 0.060 0.940
46 H 0.048 0.952
47 H 0.060 0.940
48 H 0.067 0.933
49 H 0.049 0.951
50 H 0.148 0.852
51 H 0.152 0.848
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -12.814 -16.421 30.100 36.604
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.227 4.227
2 C -0.031 4.031
3 N -0.331 5.331
4 C 0.001 3.999
5 C 0.021 3.979
6 N -0.386 5.386
7 C -0.384 4.384
8 H 0.091 0.909
9 C -0.266 4.266
10 N -0.617 5.617
11 Si 0.807 3.193
12 H -0.206 1.206
13 H -0.219 1.219
14 H -0.198 1.198
15 C 0.293 3.707
16 O -0.453 6.453
17 C -0.026 4.026
18 O -0.239 6.239
19 C 0.057 3.943
20 C -0.187 4.187
21 C -0.100 4.100
22 C -0.117 4.117
23 C -0.070 4.070
24 C -0.201 4.201
25 C -0.200 4.200
26 C -0.093 4.093
27 C -0.224 4.224
28 H 0.078 0.922
29 H 0.068 0.932
30 H 0.115 0.885
31 H 0.110 0.890
32 H 0.127 0.873
33 H 0.118 0.882
34 H 0.075 0.925
35 H 0.015 0.985
36 H 0.053 0.947
37 H 0.208 0.792
38 H 0.062 0.938
39 H 0.139 0.861
40 H 0.143 0.857
41 H 0.139 0.861
42 H 0.161 0.839
43 H 0.098 0.902
44 H 0.086 0.914
45 H 0.079 0.921
46 H 0.067 0.933
47 H 0.079 0.921
48 H 0.086 0.914
49 H 0.068 0.932
50 H 0.165 0.835
51 H 0.170 0.830
Dipole moment (debyes) X Y Z Total
from point charges -12.370 -15.707 30.036 36.082
hybrid contribution 0.758 0.779 -1.199 1.618
sum -11.613 -14.928 28.837 34.486
Atomic orbital electron populations
1.22216 0.94130 1.04042 1.02288 1.22080 0.95784 0.79657 1.05606
1.47930 1.65113 1.15918 1.04179 1.21340 0.96040 0.97592 0.84975
1.20959 0.94756 0.95434 0.86776 1.42384 1.12068 1.61168 1.23008
1.19595 0.90326 1.25876 1.02641 0.90887 1.25641 1.01798 1.00289
0.98825 1.69820 1.33634 1.38378 1.19865 0.85070 0.79149 0.76888
0.78195 1.20624 1.21931 1.19803 1.20820 0.77274 0.86398 0.86236
1.90758 1.46437 1.20351 1.87761 1.22662 1.04720 0.92784 0.82469
1.86130 1.83257 1.41804 1.12718 1.19327 0.97583 0.93892 0.83534
1.20612 1.06209 1.00693 0.91193 1.21088 0.97495 0.95688 0.95765
1.20077 1.01274 0.94026 0.96339 1.20098 0.96695 0.98266 0.91954
1.21863 0.98948 0.96887 1.02388 1.21854 0.94371 1.01406 1.02379
1.21054 0.97183 1.00316 0.90738 1.21500 1.06449 0.94453 1.00044
0.92232 0.93246 0.88455 0.88976 0.87346 0.88191 0.92452 0.98541
0.94723 0.79233 0.93768 0.86074 0.85743 0.86127 0.83871 0.90169
0.91380 0.92098 0.93297 0.92100 0.91402 0.93184 0.83465 0.83033
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.17 -2.02 10.24 71.98 0.74 -1.29 16
2 C 0.09 1.38 5.93 86.38 0.51 1.89 16
3 N -0.60 -16.01 2.47 -821.82 -2.03 -18.04 16
4 C 0.12 4.33 5.52 86.38 0.48 4.80 16
5 C 0.15 6.44 6.58 86.38 0.57 7.00 16
6 N -0.74 -40.08 5.60 -343.45 -1.92 -42.00 16
7 C -0.25 -14.83 9.99 84.03 0.84 -14.00 16
8 H 0.07 4.14 7.83 -2.91 -0.02 4.12 16
9 C -0.07 -4.33 5.50 84.86 0.47 -3.86 16
10 N -0.97 -60.57 13.06 21.65 0.28 -60.29 16
11 Si 0.98 47.34 29.55 68.60 2.03 49.37 16
12 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16
13 H -0.29 -14.17 7.11 99.48 0.71 -13.47 16
14 H -0.27 -12.67 7.11 99.48 0.71 -11.97 16
15 C 0.50 15.60 7.75 87.65 0.68 16.28 16
16 O -0.57 -25.05 16.08 16.01 0.26 -24.79 16
17 C 0.05 1.06 3.77 71.23 0.27 1.33 16
18 O -0.33 -9.09 9.67 -73.44 -0.71 -9.80 16
19 C 0.10 2.28 6.69 22.51 0.15 2.43 16
20 C -0.17 -3.67 9.99 22.37 0.22 -3.45 16
21 C -0.08 -1.37 9.66 22.25 0.22 -1.15 16
22 C -0.12 -1.62 4.78 -19.85 -0.09 -1.72 16
23 C -0.05 -0.49 3.09 -11.54 -0.04 -0.53 16
24 C -0.14 -1.19 9.00 71.98 0.65 -0.54 16
25 C -0.14 -1.13 9.01 71.98 0.65 -0.48 16
26 C -0.08 -0.98 8.70 22.26 0.19 -0.79 16
27 C -0.21 -3.22 9.04 22.36 0.20 -3.02 16
28 H 0.06 0.68 7.22 -2.39 -0.02 0.66 16
29 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16
30 H 0.10 0.67 8.14 -2.39 -0.02 0.65 16
31 H 0.09 1.43 8.07 -2.38 -0.02 1.41 16
32 H 0.11 0.97 6.44 -2.39 -0.02 0.96 16
33 H 0.10 3.07 8.07 -2.39 -0.02 3.05 16
34 H 0.06 2.34 7.42 -2.39 -0.02 2.33 16
35 H 0.00 -0.17 8.14 -2.39 -0.02 -0.19 16
36 H 0.03 1.40 8.14 -2.39 -0.02 1.38 16
37 H 0.38 21.19 7.67 -92.71 -0.71 20.47 16
38 H 0.25 15.28 8.31 -92.71 -0.77 14.51 16
39 H 0.12 1.73 6.92 -2.39 -0.02 1.71 16
40 H 0.13 1.68 6.71 -2.38 -0.02 1.66 16
41 H 0.12 2.75 8.06 -2.91 -0.02 2.73 16
42 H 0.14 1.76 7.94 -2.91 -0.02 1.74 16
43 H 0.08 0.71 7.87 -2.39 -0.02 0.69 16
44 H 0.07 0.42 8.14 -2.39 -0.02 0.40 16
45 H 0.06 0.45 7.37 -2.39 -0.02 0.44 16
46 H 0.05 0.49 8.14 -2.39 -0.02 0.47 16
47 H 0.06 0.43 7.40 -2.39 -0.02 0.41 16
48 H 0.07 0.40 8.14 -2.39 -0.02 0.38 16
49 H 0.05 0.47 8.14 -2.39 -0.02 0.45 16
50 H 0.15 1.18 7.09 -2.91 -0.02 1.16 16
51 H 0.15 1.48 6.30 -2.91 -0.02 1.46 16
Total: -1.00 -81.37 414.84 4.80 -76.57
By element:
Atomic # 1 Polarization: 25.88 SS G_CDS: 0.20 Total: 26.08 kcal
Atomic # 6 Polarization: -3.79 SS G_CDS: 6.70 Total: 2.91 kcal
Atomic # 7 Polarization: -116.66 SS G_CDS: -3.67 Total: -120.33 kcal
Atomic # 8 Polarization: -34.14 SS G_CDS: -0.45 Total: -34.59 kcal
Atomic # 14 Polarization: 47.34 SS G_CDS: 2.03 Total: 49.37 kcal
Total: -81.37 4.80 -76.57 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001497417206.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 11.797 kcal
(2) G-P(sol) polarization free energy of solvation -81.369 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.572 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.801 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.568 kcal
(6) G-S(sol) free energy of system = (1) + (5) -64.771 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.99 seconds