Wall clock time and date at job start Tue Mar 31 2020 18:03:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09004 * 109.47193 * 2 1 4 4 O 1.42894 * 109.46907 * 240.00262 * 2 1 3 5 5 C 1.35901 * 117.00236 * 84.95381 * 4 2 1 6 6 C 1.38736 * 120.05941 * 174.27826 * 5 4 2 7 7 C 1.38142 * 119.94372 * 179.74219 * 6 5 4 8 8 C 1.38269 * 120.05670 * 0.50213 * 7 6 5 9 9 C 1.38268 * 120.10997 * 359.77023 * 8 7 6 10 10 C 1.38144 * 120.05611 * 359.97428 * 9 8 7 11 11 C 1.50703 * 109.47055 * 120.00455 * 2 1 3 12 12 O 1.21279 * 119.99800 * 114.99945 * 11 2 1 13 13 N 1.34780 * 119.99704 * 294.99802 * 11 2 1 14 14 C 1.46501 * 119.99745 * 180.27942 * 13 11 2 15 15 H 1.09005 * 109.46571 * 324.72240 * 14 13 11 16 16 C 1.52996 * 109.46785 * 204.72509 * 14 13 11 17 17 N 1.46500 * 109.47528 * 55.00019 * 16 14 13 18 18 C 1.36936 * 119.99882 * 179.97438 * 17 16 14 19 19 H 1.07994 * 120.00056 * 359.97438 * 18 17 16 20 20 C 1.38811 * 119.99702 * 179.97438 * 18 17 16 21 21 N 1.31624 * 120.00087 * 180.02562 * 20 18 17 22 22 Si 1.86801 * 120.00021 * 359.97438 * 20 18 17 23 23 H 1.48498 * 109.47211 * 90.00109 * 22 20 18 24 24 H 1.48504 * 109.47040 * 210.00032 * 22 20 18 25 25 H 1.48502 * 109.47172 * 330.00104 * 22 20 18 26 26 C 1.52999 * 109.47307 * 84.72248 * 14 13 11 27 27 C 1.53001 * 109.47298 * 59.99843 * 26 14 13 28 28 C 1.52998 * 109.47200 * 180.02562 * 26 14 13 29 29 C 1.53003 * 109.47240 * 300.00055 * 26 14 13 30 30 H 1.09004 * 109.47193 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47036 * 299.99741 * 1 2 3 32 32 H 1.08995 * 109.47377 * 59.99496 * 1 2 3 33 33 H 1.07999 * 120.02446 * 359.97438 * 6 5 4 34 34 H 1.07996 * 119.97203 * 180.22840 * 7 6 5 35 35 H 1.07997 * 119.94533 * 179.74689 * 8 7 6 36 36 H 1.08001 * 119.97202 * 179.97438 * 9 8 7 37 37 H 1.08002 * 120.02593 * 179.97438 * 10 9 8 38 38 H 0.97001 * 119.99753 * 359.97438 * 13 11 2 39 39 H 1.09008 * 109.46596 * 175.00084 * 16 14 13 40 40 H 1.09000 * 109.46989 * 294.99234 * 16 14 13 41 41 H 0.97003 * 119.99332 * 359.97438 * 17 16 14 42 42 H 0.96998 * 119.99933 * 179.97438 * 21 20 18 43 43 H 1.09003 * 109.46695 * 59.99749 * 27 26 14 44 44 H 1.08992 * 109.47626 * 180.02562 * 27 26 14 45 45 H 1.08999 * 109.47020 * 300.00308 * 27 26 14 46 46 H 1.08990 * 109.47269 * 59.99747 * 28 26 14 47 47 H 1.09001 * 109.46847 * 180.02562 * 28 26 14 48 48 H 1.09000 * 109.46770 * 299.99682 * 28 26 14 49 49 H 1.08999 * 109.47035 * 59.99718 * 29 26 14 50 50 H 1.08996 * 109.47328 * 180.02562 * 29 26 14 51 51 H 1.09004 * 109.46879 * 300.00060 * 29 26 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 8 2.0063 -0.6736 -1.1668 5 6 2.1115 0.0624 -2.3044 6 6 2.6775 -0.4940 -3.4422 7 6 2.7785 0.2545 -4.5988 8 6 2.3254 1.5607 -4.6201 9 6 1.7660 2.1194 -3.4858 10 6 1.6580 1.3734 -2.3282 11 6 2.0323 -0.7105 1.2304 12 8 2.6529 -1.7468 1.1213 13 7 1.7919 -0.1943 2.4520 14 6 2.2855 -0.8818 3.6478 15 1 2.2381 -1.9597 3.4927 16 6 1.4184 -0.5008 4.8494 17 7 0.0136 -0.7878 4.5486 18 6 -0.9536 -0.5271 5.4823 19 1 -0.6808 -0.1103 6.4405 20 6 -2.2847 -0.7986 5.1971 21 7 -3.2145 -0.5475 6.0942 22 14 -2.7566 -1.5189 3.5394 23 1 -2.7292 -3.0015 3.6180 24 1 -4.1236 -1.0677 3.1747 25 1 -1.7921 -1.0600 2.5076 26 6 3.7344 -0.4678 3.9126 27 6 3.8009 1.0452 4.1302 28 6 4.2500 -1.1863 5.1611 29 6 4.6014 -0.8487 2.7109 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5139 -0.8899 33 1 3.0355 -1.5128 -3.4248 34 1 3.2157 -0.1794 -5.4859 35 1 2.4089 2.1456 -5.5242 36 1 1.4132 3.1400 -3.5048 37 1 1.2214 1.8104 -1.4423 38 1 1.2958 0.6347 2.5391 39 1 1.7292 -1.0792 5.7196 40 1 1.5353 0.5624 5.0593 41 1 -0.2313 -1.1626 3.6881 42 1 -4.1446 -0.7368 5.8948 43 1 3.1831 1.3166 4.9863 44 1 4.8331 1.3403 4.3185 45 1 3.4336 1.5567 3.2405 46 1 4.2028 -2.2640 5.0057 47 1 5.2821 -0.8909 5.3500 48 1 3.6324 -0.9152 6.0174 49 1 4.2342 -0.3372 1.8212 50 1 5.6337 -0.5542 2.8998 51 1 4.5541 -1.9266 2.5559 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001508031125.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:03:14 Heat of formation + Delta-G solvation = -38.321449 kcal Electronic energy + Delta-G solvation = -30201.129659 eV Core-core repulsion = 26294.273188 eV Total energy + Delta-G solvation = -3906.856471 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.86271 -39.88519 -38.01179 -37.00124 -34.66422 -33.63155 -32.16807 -31.31775 -30.93365 -29.82252 -28.16692 -27.21855 -26.82648 -24.91975 -23.67868 -22.96957 -22.29571 -21.35912 -20.29766 -18.82358 -18.53938 -17.95987 -16.95345 -16.45228 -16.01724 -15.91902 -15.50350 -15.25974 -14.66283 -14.53337 -14.24732 -14.11350 -13.86746 -13.66001 -13.55853 -13.26440 -13.12297 -12.85551 -12.72472 -12.53066 -12.33759 -12.03112 -11.97602 -11.91162 -11.79029 -11.59999 -11.46488 -11.35025 -11.16736 -11.01211 -10.90830 -10.80976 -10.60608 -10.36129 -10.04632 -9.66841 -9.63876 -9.24684 -8.97717 -8.79920 -8.41199 -7.31326 -5.83744 -3.20070 1.08667 1.20862 2.54132 2.63642 3.29078 3.35770 3.40969 3.55169 3.57123 4.43267 4.52346 4.58459 4.64219 4.69041 4.72111 4.79099 4.89102 4.94430 5.06389 5.12669 5.18009 5.35050 5.38280 5.44655 5.46054 5.51929 5.56310 5.66948 5.74523 5.76111 5.80740 5.82601 5.94845 5.97638 6.03701 6.06680 6.08381 6.15815 6.20981 6.28338 6.30643 6.33666 6.38440 6.50675 6.51689 6.60996 6.77792 7.18279 7.60164 7.91481 8.28245 8.34944 9.13438 9.85581 10.04944 11.34369 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.010290 B = 0.003814 C = 0.003012 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2720.555048 B = 7339.532788 C = 9292.442096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.067 3.933 3 H 0.096 0.904 4 O -0.284 6.284 5 C 0.134 3.866 6 C -0.151 4.151 7 C -0.081 4.081 8 C -0.163 4.163 9 C -0.080 4.080 10 C -0.213 4.213 11 C 0.518 3.482 12 O -0.516 6.516 13 N -0.708 5.708 14 C 0.147 3.853 15 H 0.089 0.911 16 C 0.146 3.854 17 N -0.755 5.755 18 C -0.246 4.246 19 H 0.091 0.909 20 C 0.007 3.993 21 N -0.932 5.932 22 Si 0.882 3.118 23 H -0.284 1.284 24 H -0.291 1.291 25 H -0.277 1.277 26 C -0.076 4.076 27 C -0.142 4.142 28 C -0.142 4.142 29 C -0.130 4.130 30 H 0.076 0.924 31 H 0.085 0.915 32 H 0.074 0.926 33 H 0.131 0.869 34 H 0.128 0.872 35 H 0.122 0.878 36 H 0.124 0.876 37 H 0.130 0.870 38 H 0.404 0.596 39 H 0.046 0.954 40 H 0.038 0.962 41 H 0.362 0.638 42 H 0.260 0.740 43 H 0.064 0.936 44 H 0.051 0.949 45 H 0.051 0.949 46 H 0.056 0.944 47 H 0.054 0.946 48 H 0.064 0.936 49 H 0.049 0.951 50 H 0.043 0.957 51 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.629 5.942 -16.810 23.062 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.007 3.993 3 H 0.114 0.886 4 O -0.196 6.196 5 C 0.088 3.912 6 C -0.170 4.170 7 C -0.099 4.099 8 C -0.181 4.181 9 C -0.098 4.098 10 C -0.232 4.232 11 C 0.302 3.698 12 O -0.391 6.391 13 N -0.360 5.360 14 C 0.042 3.958 15 H 0.107 0.893 16 C 0.019 3.981 17 N -0.401 5.401 18 C -0.376 4.376 19 H 0.109 0.891 20 C -0.189 4.189 21 N -0.580 5.580 22 Si 0.712 3.288 23 H -0.211 1.211 24 H -0.217 1.217 25 H -0.203 1.203 26 C -0.078 4.078 27 C -0.199 4.199 28 C -0.199 4.199 29 C -0.187 4.187 30 H 0.095 0.905 31 H 0.104 0.896 32 H 0.093 0.907 33 H 0.149 0.851 34 H 0.146 0.854 35 H 0.140 0.860 36 H 0.142 0.858 37 H 0.148 0.852 38 H 0.239 0.761 39 H 0.063 0.937 40 H 0.055 0.945 41 H 0.195 0.805 42 H 0.070 0.930 43 H 0.083 0.917 44 H 0.070 0.930 45 H 0.070 0.930 46 H 0.075 0.925 47 H 0.073 0.927 48 H 0.083 0.917 49 H 0.069 0.931 50 H 0.062 0.938 51 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 15.000 5.039 -16.622 22.950 hybrid contribution -0.930 0.114 -1.049 1.407 sum 14.070 5.154 -17.671 23.169 Atomic orbital electron populations 1.22390 0.92306 1.04865 1.04151 1.22243 0.95973 0.96837 0.84223 0.88628 1.86218 1.80752 1.36933 1.15684 1.19122 0.94885 0.90328 0.86842 1.20489 1.03701 1.01527 0.91284 1.20972 0.97900 0.94019 0.97031 1.21063 1.02432 0.95904 0.98721 1.20959 0.97096 0.99434 0.92281 1.21361 1.07045 0.94418 1.00367 1.19876 0.80065 0.85744 0.84101 1.90728 1.39257 1.22826 1.86300 1.45874 1.57036 1.28113 1.04972 1.21391 0.92296 0.97859 0.84235 0.89338 1.21091 0.84269 0.98887 0.93881 1.42707 1.01932 1.78356 1.17101 1.19028 0.86268 1.35840 0.96416 0.89135 1.24659 0.95670 1.01154 0.97403 1.69697 1.00367 1.53859 1.34039 0.86608 0.77562 0.79530 0.85070 1.21105 1.21738 1.20282 1.20897 0.94618 0.96050 0.96195 1.21921 1.01449 0.94667 1.01904 1.21893 1.00722 1.00348 0.96971 1.21893 0.97839 1.02199 0.96800 0.90541 0.89602 0.90706 0.85086 0.85410 0.85998 0.85778 0.85177 0.76122 0.93673 0.94451 0.80497 0.93000 0.91681 0.93015 0.93018 0.92501 0.92733 0.91709 0.93147 0.93786 0.91952 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.22 9.12 37.16 0.34 -1.88 16 2 C 0.07 0.86 2.64 -27.88 -0.07 0.78 16 3 H 0.10 0.97 6.31 -51.93 -0.33 0.64 16 4 O -0.28 -4.07 9.34 -39.29 -0.37 -4.44 16 5 C 0.13 1.65 6.60 -39.21 -0.26 1.39 16 6 C -0.15 -1.68 9.99 -39.43 -0.39 -2.07 16 7 C -0.08 -0.73 10.04 -39.61 -0.40 -1.13 16 8 C -0.16 -1.39 10.04 -39.56 -0.40 -1.78 16 9 C -0.08 -0.71 10.04 -39.60 -0.40 -1.11 16 10 C -0.21 -2.22 8.24 -39.43 -0.33 -2.54 16 11 C 0.52 7.84 5.52 -10.98 -0.06 7.78 16 12 O -0.52 -9.45 13.62 -14.30 -0.19 -9.64 16 13 N -0.71 -10.03 3.61 -53.80 -0.19 -10.22 16 14 C 0.15 2.22 1.69 -67.93 -0.11 2.11 16 15 H 0.09 1.54 7.58 -51.93 -0.39 1.15 16 16 C 0.15 2.57 5.10 -4.04 -0.02 2.55 16 17 N -0.75 -16.78 5.24 -59.91 -0.31 -17.10 16 18 C -0.25 -6.64 10.47 -15.06 -0.16 -6.80 16 19 H 0.09 2.62 8.06 -52.49 -0.42 2.20 16 20 C 0.01 0.20 5.50 -17.43 -0.10 0.11 16 21 N -0.93 -28.60 13.97 55.49 0.78 -27.83 16 22 Si 0.88 21.61 27.73 -169.99 -4.71 16.90 16 23 H -0.28 -7.14 7.11 56.52 0.40 -6.74 16 24 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 25 H -0.28 -6.18 6.52 56.52 0.37 -5.81 16 26 C -0.08 -0.97 0.62 -154.51 -0.10 -1.06 16 27 C -0.14 -1.62 7.97 37.16 0.30 -1.32 16 28 C -0.14 -1.68 8.12 37.16 0.30 -1.38 16 29 C -0.13 -1.73 6.99 37.16 0.26 -1.47 16 30 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 31 H 0.09 1.04 7.92 -51.93 -0.41 0.63 16 32 H 0.07 0.79 6.91 -51.93 -0.36 0.43 16 33 H 0.13 1.37 8.06 -52.49 -0.42 0.95 16 34 H 0.13 0.82 8.06 -52.49 -0.42 0.40 16 35 H 0.12 0.76 8.06 -52.49 -0.42 0.33 16 36 H 0.12 0.83 8.06 -52.49 -0.42 0.41 16 37 H 0.13 1.17 5.43 -52.49 -0.29 0.89 16 38 H 0.40 5.22 8.39 -40.82 -0.34 4.88 16 39 H 0.05 0.81 6.71 -51.92 -0.35 0.47 16 40 H 0.04 0.64 6.17 -51.93 -0.32 0.32 16 41 H 0.36 8.05 5.20 -40.82 -0.21 7.84 16 42 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 43 H 0.06 0.76 6.32 -51.93 -0.33 0.43 16 44 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 45 H 0.05 0.57 7.60 -51.93 -0.39 0.17 16 46 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 47 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 48 H 0.06 0.78 6.54 -51.93 -0.34 0.44 16 49 H 0.05 0.72 5.76 -51.93 -0.30 0.42 16 50 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 51 H 0.06 0.93 7.53 -51.93 -0.39 0.54 16 LS Contribution 396.63 15.07 5.98 5.98 Total: -1.00 -32.70 396.63 -8.77 -41.47 By element: Atomic # 1 Polarization: 20.87 SS G_CDS: -8.15 Total: 12.72 kcal Atomic # 6 Polarization: -6.25 SS G_CDS: -1.59 Total: -7.84 kcal Atomic # 7 Polarization: -55.41 SS G_CDS: 0.27 Total: -55.15 kcal Atomic # 8 Polarization: -13.52 SS G_CDS: -0.56 Total: -14.08 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -4.71 Total: 16.90 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -32.70 -8.77 -41.47 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001508031125.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.153 kcal (2) G-P(sol) polarization free energy of solvation -32.701 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.548 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.773 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.474 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.321 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds