Wall clock time and date at job start Tue Mar 31 2020 18:03:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09004 * 109.47193 * 2 1 4 4 O 1.42894 * 109.46907 * 240.00262 * 2 1 3 5 5 C 1.35901 * 117.00236 * 84.95381 * 4 2 1 6 6 C 1.38736 * 120.05941 * 174.27826 * 5 4 2 7 7 C 1.38142 * 119.94372 * 179.74219 * 6 5 4 8 8 C 1.38269 * 120.05670 * 0.50213 * 7 6 5 9 9 C 1.38268 * 120.10997 * 359.77023 * 8 7 6 10 10 C 1.38144 * 120.05611 * 359.97428 * 9 8 7 11 11 C 1.50703 * 109.47055 * 120.00455 * 2 1 3 12 12 O 1.21279 * 119.99800 * 114.99945 * 11 2 1 13 13 N 1.34780 * 119.99704 * 294.99802 * 11 2 1 14 14 C 1.46501 * 119.99745 * 180.27942 * 13 11 2 15 15 H 1.09005 * 109.46571 * 324.72240 * 14 13 11 16 16 C 1.52996 * 109.46785 * 204.72509 * 14 13 11 17 17 N 1.46500 * 109.47528 * 55.00019 * 16 14 13 18 18 C 1.36936 * 119.99882 * 179.97438 * 17 16 14 19 19 H 1.07994 * 120.00056 * 359.97438 * 18 17 16 20 20 C 1.38811 * 119.99702 * 179.97438 * 18 17 16 21 21 N 1.31624 * 120.00087 * 180.02562 * 20 18 17 22 22 Si 1.86801 * 120.00021 * 359.97438 * 20 18 17 23 23 H 1.48498 * 109.47211 * 90.00109 * 22 20 18 24 24 H 1.48504 * 109.47040 * 210.00032 * 22 20 18 25 25 H 1.48502 * 109.47172 * 330.00104 * 22 20 18 26 26 C 1.52999 * 109.47307 * 84.72248 * 14 13 11 27 27 C 1.53001 * 109.47298 * 59.99843 * 26 14 13 28 28 C 1.52998 * 109.47200 * 180.02562 * 26 14 13 29 29 C 1.53003 * 109.47240 * 300.00055 * 26 14 13 30 30 H 1.09004 * 109.47193 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47036 * 299.99741 * 1 2 3 32 32 H 1.08995 * 109.47377 * 59.99496 * 1 2 3 33 33 H 1.07999 * 120.02446 * 359.97438 * 6 5 4 34 34 H 1.07996 * 119.97203 * 180.22840 * 7 6 5 35 35 H 1.07997 * 119.94533 * 179.74689 * 8 7 6 36 36 H 1.08001 * 119.97202 * 179.97438 * 9 8 7 37 37 H 1.08002 * 120.02593 * 179.97438 * 10 9 8 38 38 H 0.97001 * 119.99753 * 359.97438 * 13 11 2 39 39 H 1.09008 * 109.46596 * 175.00084 * 16 14 13 40 40 H 1.09000 * 109.46989 * 294.99234 * 16 14 13 41 41 H 0.97003 * 119.99332 * 359.97438 * 17 16 14 42 42 H 0.96998 * 119.99933 * 179.97438 * 21 20 18 43 43 H 1.09003 * 109.46695 * 59.99749 * 27 26 14 44 44 H 1.08992 * 109.47626 * 180.02562 * 27 26 14 45 45 H 1.08999 * 109.47020 * 300.00308 * 27 26 14 46 46 H 1.08990 * 109.47269 * 59.99747 * 28 26 14 47 47 H 1.09001 * 109.46847 * 180.02562 * 28 26 14 48 48 H 1.09000 * 109.46770 * 299.99682 * 28 26 14 49 49 H 1.08999 * 109.47035 * 59.99718 * 29 26 14 50 50 H 1.08996 * 109.47328 * 180.02562 * 29 26 14 51 51 H 1.09004 * 109.46879 * 300.00060 * 29 26 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 8 2.0063 -0.6736 -1.1668 5 6 2.1115 0.0624 -2.3044 6 6 2.6775 -0.4940 -3.4422 7 6 2.7785 0.2545 -4.5988 8 6 2.3254 1.5607 -4.6201 9 6 1.7660 2.1194 -3.4858 10 6 1.6580 1.3734 -2.3282 11 6 2.0323 -0.7105 1.2304 12 8 2.6529 -1.7468 1.1213 13 7 1.7919 -0.1943 2.4520 14 6 2.2855 -0.8818 3.6478 15 1 2.2381 -1.9597 3.4927 16 6 1.4184 -0.5008 4.8494 17 7 0.0136 -0.7878 4.5486 18 6 -0.9536 -0.5271 5.4823 19 1 -0.6808 -0.1103 6.4405 20 6 -2.2847 -0.7986 5.1971 21 7 -3.2145 -0.5475 6.0942 22 14 -2.7566 -1.5189 3.5394 23 1 -2.7292 -3.0015 3.6180 24 1 -4.1236 -1.0677 3.1747 25 1 -1.7921 -1.0600 2.5076 26 6 3.7344 -0.4678 3.9126 27 6 3.8009 1.0452 4.1302 28 6 4.2500 -1.1863 5.1611 29 6 4.6014 -0.8487 2.7109 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5139 -0.8899 33 1 3.0355 -1.5128 -3.4248 34 1 3.2157 -0.1794 -5.4859 35 1 2.4089 2.1456 -5.5242 36 1 1.4132 3.1400 -3.5048 37 1 1.2214 1.8104 -1.4423 38 1 1.2958 0.6347 2.5391 39 1 1.7292 -1.0792 5.7196 40 1 1.5353 0.5624 5.0593 41 1 -0.2313 -1.1626 3.6881 42 1 -4.1446 -0.7368 5.8948 43 1 3.1831 1.3166 4.9863 44 1 4.8331 1.3403 4.3185 45 1 3.4336 1.5567 3.2405 46 1 4.2028 -2.2640 5.0057 47 1 5.2821 -0.8909 5.3500 48 1 3.6324 -0.9152 6.0174 49 1 4.2342 -0.3372 1.8212 50 1 5.6337 -0.5542 2.8998 51 1 4.5541 -1.9266 2.5559 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001508031125.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:03:13 Heat of formation + Delta-G solvation = -57.775770 kcal Electronic energy + Delta-G solvation = -30201.973262 eV Core-core repulsion = 26294.273188 eV Total energy + Delta-G solvation = -3907.700074 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.89968 -40.88485 -39.01216 -38.03782 -36.34798 -34.92449 -33.52438 -32.87547 -31.72228 -30.61145 -29.66913 -28.16300 -27.89814 -26.10502 -25.18444 -23.80055 -23.29044 -22.80696 -21.39295 -20.13790 -19.60035 -19.40410 -18.20073 -17.46403 -17.15958 -16.85256 -16.65376 -16.33948 -16.13803 -15.80009 -15.40749 -15.11927 -15.05232 -14.79981 -14.61075 -14.48732 -14.40204 -14.14864 -13.82297 -13.66328 -13.43305 -13.32955 -13.11501 -13.00590 -12.91585 -12.81897 -12.55911 -12.46276 -12.40952 -12.14112 -12.08513 -12.05194 -11.82307 -11.76821 -11.64735 -11.31863 -11.02646 -10.79662 -10.02006 -9.95852 -9.29834 -9.20495 -8.03016 -5.36004 0.37990 0.46429 1.33047 1.38914 1.43849 1.45925 1.55446 2.45889 2.54668 2.83462 3.29517 3.39722 3.50573 3.64172 3.75745 3.81803 3.92099 3.98383 4.00392 4.03257 4.26939 4.28305 4.35350 4.40672 4.49749 4.53821 4.59066 4.59629 4.72798 4.80291 4.82864 4.86969 4.94962 5.00459 5.04277 5.07088 5.08215 5.12435 5.22501 5.29303 5.34684 5.38798 5.47303 5.52044 5.57900 5.59584 5.77310 5.82921 6.20303 6.32374 6.48953 7.06812 7.12986 7.82142 8.00414 9.18214 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.010290 B = 0.003814 C = 0.003012 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2720.555048 B = 7339.532788 C = 9292.442096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.073 3.927 3 H 0.125 0.875 4 O -0.311 6.311 5 C 0.105 3.895 6 C -0.173 4.173 7 C -0.082 4.082 8 C -0.161 4.161 9 C -0.083 4.083 10 C -0.219 4.219 11 C 0.516 3.484 12 O -0.553 6.553 13 N -0.701 5.701 14 C 0.156 3.844 15 H 0.064 0.936 16 C 0.147 3.853 17 N -0.756 5.756 18 C -0.226 4.226 19 H 0.064 0.936 20 C -0.057 4.057 21 N -0.981 5.981 22 Si 0.942 3.058 23 H -0.293 1.293 24 H -0.295 1.295 25 H -0.245 1.245 26 C -0.070 4.070 27 C -0.139 4.139 28 C -0.141 4.141 29 C -0.121 4.121 30 H 0.053 0.947 31 H 0.090 0.910 32 H 0.093 0.907 33 H 0.124 0.876 34 H 0.152 0.848 35 H 0.150 0.850 36 H 0.150 0.850 37 H 0.142 0.858 38 H 0.412 0.588 39 H 0.044 0.956 40 H 0.053 0.947 41 H 0.363 0.637 42 H 0.257 0.743 43 H 0.062 0.938 44 H 0.068 0.932 45 H 0.056 0.944 46 H 0.048 0.952 47 H 0.073 0.927 48 H 0.062 0.938 49 H 0.039 0.961 50 H 0.062 0.938 51 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.979 7.881 -19.062 26.092 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.013 3.987 3 H 0.142 0.858 4 O -0.225 6.225 5 C 0.060 3.940 6 C -0.191 4.191 7 C -0.100 4.100 8 C -0.179 4.179 9 C -0.101 4.101 10 C -0.238 4.238 11 C 0.302 3.698 12 O -0.431 6.431 13 N -0.354 5.354 14 C 0.051 3.949 15 H 0.082 0.918 16 C 0.021 3.979 17 N -0.402 5.402 18 C -0.357 4.357 19 H 0.082 0.918 20 C -0.249 4.249 21 N -0.632 5.632 22 Si 0.770 3.230 23 H -0.220 1.220 24 H -0.221 1.221 25 H -0.169 1.169 26 C -0.072 4.072 27 C -0.196 4.196 28 C -0.199 4.199 29 C -0.178 4.178 30 H 0.072 0.928 31 H 0.109 0.891 32 H 0.112 0.888 33 H 0.142 0.858 34 H 0.169 0.831 35 H 0.167 0.833 36 H 0.168 0.832 37 H 0.160 0.840 38 H 0.249 0.751 39 H 0.062 0.938 40 H 0.071 0.929 41 H 0.197 0.803 42 H 0.066 0.934 43 H 0.081 0.919 44 H 0.087 0.913 45 H 0.075 0.925 46 H 0.067 0.933 47 H 0.092 0.908 48 H 0.081 0.919 49 H 0.059 0.941 50 H 0.081 0.919 51 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 16.400 7.007 -18.897 25.983 hybrid contribution -1.241 -0.468 -0.346 1.371 sum 15.159 6.539 -19.242 25.354 Atomic orbital electron populations 1.22381 0.91970 1.03737 1.05315 1.22229 0.96034 0.97584 0.82857 0.85810 1.86174 1.81440 1.38269 1.16574 1.19401 0.96690 0.91370 0.86498 1.20692 1.04514 1.01818 0.92101 1.21295 0.97398 0.94297 0.97001 1.21468 1.01040 0.95759 0.99653 1.21340 0.96451 1.00496 0.91781 1.21548 1.06963 0.93716 1.01539 1.20354 0.79311 0.85298 0.84875 1.90714 1.40993 1.24542 1.86844 1.45805 1.56861 1.28164 1.04565 1.21197 0.93510 0.96608 0.83610 0.91822 1.21230 0.82075 0.99599 0.95003 1.42699 1.03042 1.78195 1.16232 1.19014 0.87153 1.33508 0.96018 0.91801 1.25360 0.95816 1.02682 1.01005 1.69859 1.00608 1.56319 1.36399 0.85619 0.77627 0.77956 0.81791 1.22038 1.22137 1.16898 1.20853 0.92547 0.97382 0.96371 1.21894 1.02597 0.93099 1.02011 1.21897 1.01857 0.99825 0.96304 1.21783 0.98942 1.00593 0.96510 0.92756 0.89120 0.88804 0.85752 0.83053 0.83262 0.83216 0.84004 0.75131 0.93786 0.92918 0.80342 0.93415 0.91933 0.91328 0.92513 0.93291 0.90767 0.91945 0.94144 0.91933 0.94161 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.07 9.12 71.98 0.66 -3.41 16 2 C 0.07 1.76 2.64 29.85 0.08 1.84 16 3 H 0.12 2.23 6.31 -2.39 -0.02 2.22 16 4 O -0.31 -8.89 9.34 -73.45 -0.69 -9.58 16 5 C 0.11 2.51 6.60 22.51 0.15 2.66 16 6 C -0.17 -3.74 9.99 22.37 0.22 -3.52 16 7 C -0.08 -1.30 10.04 22.25 0.22 -1.08 16 8 C -0.16 -2.23 10.04 22.28 0.22 -2.00 16 9 C -0.08 -1.22 10.04 22.25 0.22 -1.00 16 10 C -0.22 -4.07 8.24 22.37 0.18 -3.89 16 11 C 0.52 15.31 5.52 87.66 0.48 15.80 16 12 O -0.55 -20.56 13.62 15.96 0.22 -20.34 16 13 N -0.70 -19.02 3.61 -442.53 -1.60 -20.62 16 14 C 0.16 4.60 1.69 44.99 0.08 4.67 16 15 H 0.06 2.23 7.58 -2.38 -0.02 2.22 16 16 C 0.15 5.02 5.10 86.38 0.44 5.46 16 17 N -0.76 -33.00 5.24 -343.45 -1.80 -34.80 16 18 C -0.23 -12.24 10.47 84.03 0.88 -11.36 16 19 H 0.06 3.76 8.06 -2.91 -0.02 3.74 16 20 C -0.06 -3.25 5.50 84.86 0.47 -2.79 16 21 N -0.98 -61.48 13.97 21.65 0.30 -61.17 16 22 Si 0.94 44.69 27.73 68.60 1.90 46.60 16 23 H -0.29 -14.28 7.11 99.48 0.71 -13.58 16 24 H -0.29 -14.12 7.11 99.48 0.71 -13.41 16 25 H -0.24 -10.15 6.52 99.48 0.65 -9.50 16 26 C -0.07 -1.68 0.62 -52.18 -0.03 -1.71 16 27 C -0.14 -2.79 7.97 71.98 0.57 -2.22 16 28 C -0.14 -3.14 8.12 71.98 0.58 -2.56 16 29 C -0.12 -3.09 6.99 71.98 0.50 -2.59 16 30 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 31 H 0.09 1.97 7.92 -2.39 -0.02 1.95 16 32 H 0.09 1.78 6.91 -2.39 -0.02 1.76 16 33 H 0.12 2.70 8.06 -2.91 -0.02 2.68 16 34 H 0.15 1.57 8.06 -2.91 -0.02 1.54 16 35 H 0.15 1.22 8.06 -2.91 -0.02 1.19 16 36 H 0.15 1.39 8.06 -2.91 -0.02 1.36 16 37 H 0.14 2.16 5.43 -2.91 -0.02 2.14 16 38 H 0.41 9.81 8.39 -92.71 -0.78 9.03 16 39 H 0.04 1.56 6.71 -2.38 -0.02 1.54 16 40 H 0.05 1.70 6.17 -2.39 -0.01 1.68 16 41 H 0.36 15.70 5.20 -92.71 -0.48 15.22 16 42 H 0.26 15.44 8.31 -92.71 -0.77 14.67 16 43 H 0.06 1.30 6.32 -2.39 -0.02 1.28 16 44 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 45 H 0.06 1.09 7.60 -2.39 -0.02 1.07 16 46 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 47 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 48 H 0.06 1.42 6.54 -2.39 -0.02 1.40 16 49 H 0.04 1.11 5.76 -2.39 -0.01 1.09 16 50 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 51 H 0.04 1.20 7.53 -2.39 -0.02 1.18 16 Total: -1.00 -72.59 396.63 3.90 -68.69 By element: Atomic # 1 Polarization: 39.31 SS G_CDS: -0.38 Total: 38.93 kcal Atomic # 6 Polarization: -13.64 SS G_CDS: 5.94 Total: -7.70 kcal Atomic # 7 Polarization: -113.50 SS G_CDS: -3.09 Total: -116.59 kcal Atomic # 8 Polarization: -29.45 SS G_CDS: -0.47 Total: -29.92 kcal Atomic # 14 Polarization: 44.69 SS G_CDS: 1.90 Total: 46.60 kcal Total: -72.59 3.90 -68.69 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001508031125.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.910 kcal (2) G-P(sol) polarization free energy of solvation -72.589 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.679 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.903 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.686 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.776 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds