Wall clock time and date at job start Tue Mar 31 2020 18:03:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09006 * 109.46580 * 2 1 4 4 O 1.42896 * 109.47211 * 119.99711 * 2 1 3 5 5 C 1.35907 * 117.00171 * 275.32908 * 4 2 1 6 6 C 1.38732 * 120.05573 * 5.08150 * 5 4 2 7 7 C 1.38145 * 119.94477 * 179.74892 * 6 5 4 8 8 C 1.38265 * 120.05157 * 0.50520 * 7 6 5 9 9 C 1.38263 * 120.11487 * 359.77436 * 8 7 6 10 10 C 1.38146 * 120.05442 * 359.97081 * 9 8 7 11 11 C 1.50692 * 109.47090 * 240.00059 * 2 1 3 12 12 O 1.21285 * 120.00019 * 244.98999 * 11 2 1 13 13 N 1.34770 * 120.00243 * 65.00092 * 11 2 1 14 14 C 1.46501 * 120.00195 * 180.02562 * 13 11 2 15 15 H 1.08996 * 109.47454 * 34.99252 * 14 13 11 16 16 C 1.52999 * 109.47535 * 154.99904 * 14 13 11 17 17 N 1.46504 * 109.46985 * 304.99841 * 16 14 13 18 18 C 1.36929 * 119.99957 * 179.97438 * 17 16 14 19 19 H 1.07999 * 120.00625 * 0.02562 * 18 17 16 20 20 C 1.38818 * 119.99932 * 180.02562 * 18 17 16 21 21 N 1.31622 * 119.99587 * 359.97438 * 20 18 17 22 22 Si 1.86794 * 120.00163 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.47292 * 59.99565 * 22 20 18 24 24 H 1.48504 * 109.47023 * 180.02562 * 22 20 18 25 25 H 1.48507 * 109.47219 * 299.99617 * 22 20 18 26 26 C 1.53006 * 109.46995 * 274.99695 * 14 13 11 27 27 C 1.52997 * 109.47081 * 59.99503 * 26 14 13 28 28 C 1.53000 * 109.47215 * 180.02562 * 26 14 13 29 29 C 1.53002 * 109.47117 * 299.99880 * 26 14 13 30 30 H 1.09002 * 109.47572 * 300.00119 * 1 2 3 31 31 H 1.09005 * 109.47308 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.47252 * 60.00263 * 1 2 3 33 33 H 1.08006 * 120.02488 * 359.97438 * 6 5 4 34 34 H 1.07997 * 119.97226 * 180.23524 * 7 6 5 35 35 H 1.08001 * 119.94045 * 179.74739 * 8 7 6 36 36 H 1.07998 * 119.97266 * 179.97438 * 9 8 7 37 37 H 1.08005 * 120.02435 * 179.97438 * 10 9 8 38 38 H 0.97001 * 120.00404 * 359.97438 * 13 11 2 39 39 H 1.09003 * 109.47025 * 64.99621 * 16 14 13 40 40 H 1.09000 * 109.47484 * 184.99870 * 16 14 13 41 41 H 0.97007 * 119.99662 * 359.97438 * 17 16 14 42 42 H 0.97004 * 119.99537 * 180.02562 * 21 20 18 43 43 H 1.09005 * 109.46864 * 60.00542 * 27 26 14 44 44 H 1.09003 * 109.46708 * 179.97438 * 27 26 14 45 45 H 1.08993 * 109.47691 * 300.00166 * 27 26 14 46 46 H 1.08995 * 109.47240 * 60.00043 * 28 26 14 47 47 H 1.08998 * 109.47078 * 179.97438 * 28 26 14 48 48 H 1.09003 * 109.46663 * 299.99792 * 28 26 14 49 49 H 1.09002 * 109.47102 * 59.99629 * 29 26 14 50 50 H 1.08998 * 109.47380 * 179.97438 * 29 26 14 51 51 H 1.09004 * 109.47224 * 300.00100 * 29 26 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0278 0.0000 4 8 2.0063 -0.6736 1.1668 5 6 2.1060 0.0610 2.3059 6 6 1.6543 1.3726 2.3286 7 6 1.7519 2.1155 3.4891 8 6 2.3088 1.5563 4.6244 9 6 2.7650 0.2513 4.6027 10 6 2.6648 -0.4975 3.4461 11 6 2.0323 -0.7104 -1.2304 12 8 2.6531 -1.7466 -1.1214 13 7 1.7919 -0.1942 -2.4519 14 6 2.2797 -0.8851 -3.6481 15 1 2.2323 -1.9625 -3.4902 16 6 1.4079 -0.5065 -4.8471 17 7 0.0042 -0.7916 -4.5395 18 6 -0.9669 -0.5315 -5.4692 19 1 -0.6980 -0.1166 -6.4294 20 6 -2.2970 -0.8012 -5.1776 21 7 -2.6247 -1.3073 -4.0076 22 14 -3.6217 -0.4471 -6.4461 23 1 -3.3558 -1.2391 -7.6738 24 1 -4.9486 -0.8199 -5.8935 25 1 -3.6138 1.0001 -6.7794 26 6 3.7279 -0.4728 -3.9202 27 6 4.5997 -0.8514 -2.7213 28 6 4.2372 -1.1939 -5.1698 29 6 3.7945 1.0396 -4.1419 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3634 0.5138 -0.8900 33 1 1.2233 1.8112 1.4407 34 1 1.3970 3.1353 3.5084 35 1 2.3880 2.1401 5.5296 36 1 3.2000 -0.1830 5.4907 37 1 3.0217 -1.5167 3.4296 38 1 1.2952 0.6345 -2.5392 39 1 1.5246 0.5562 -5.0600 40 1 1.7144 -1.0872 -5.7171 41 1 -0.2373 -1.1646 -3.6772 42 1 -3.5541 -1.4961 -3.8040 43 1 4.5522 -1.9289 -2.5633 44 1 5.6314 -0.5581 -2.9154 45 1 4.2368 -0.3374 -1.8313 46 1 3.6160 -0.9238 -6.0237 47 1 5.2687 -0.8999 -5.3639 48 1 4.1896 -2.2714 -5.0123 49 1 3.4315 1.5536 -3.2520 50 1 4.8262 1.3333 -4.3353 51 1 3.1733 1.3093 -4.9961 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001508031128.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:03:17 Heat of formation + Delta-G solvation = -42.246557 kcal Electronic energy + Delta-G solvation = -30034.831087 eV Core-core repulsion = 26127.804411 eV Total energy + Delta-G solvation = -3907.026677 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.71367 -39.74536 -37.88769 -36.86207 -34.47666 -33.47197 -32.02957 -31.09300 -30.75307 -29.69809 -27.76302 -27.14814 -26.70601 -24.71778 -23.74122 -22.90094 -22.23479 -21.42947 -20.12778 -18.68673 -18.40491 -17.50715 -16.75196 -16.32649 -15.84304 -15.77767 -15.40537 -15.10581 -14.65302 -14.48558 -13.99691 -13.93793 -13.83112 -13.55321 -13.44746 -13.14742 -13.06552 -12.76497 -12.56514 -12.32090 -12.21874 -11.92882 -11.81772 -11.79335 -11.68737 -11.38813 -11.25069 -11.16390 -11.03814 -10.88685 -10.82872 -10.75638 -10.51973 -10.27638 -9.97393 -9.77368 -9.46863 -9.15263 -8.92643 -8.63003 -8.30265 -6.98669 -5.81621 -3.11180 1.18003 1.30693 2.69207 2.82427 3.39925 3.45128 3.45845 3.64809 3.73425 4.52532 4.58191 4.70677 4.75998 4.82949 4.89912 4.96784 4.98720 5.04544 5.15928 5.21740 5.29973 5.46702 5.50292 5.54777 5.65282 5.71379 5.73501 5.77311 5.85861 5.88380 5.90314 6.02114 6.06523 6.11016 6.14937 6.17287 6.24949 6.26069 6.29271 6.37165 6.43968 6.44823 6.47805 6.61613 6.62610 6.70927 6.92265 7.30854 7.64161 7.78491 8.36224 8.46841 9.48192 10.03917 10.39464 11.40433 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.010485 B = 0.003389 C = 0.002741 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2669.902172 B = 8260.461642 C =10212.047908 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.068 3.932 3 H 0.093 0.907 4 O -0.284 6.284 5 C 0.136 3.864 6 C -0.213 4.213 7 C -0.080 4.080 8 C -0.165 4.165 9 C -0.082 4.082 10 C -0.152 4.152 11 C 0.520 3.480 12 O -0.520 6.520 13 N -0.703 5.703 14 C 0.151 3.849 15 H 0.088 0.912 16 C 0.142 3.858 17 N -0.731 5.731 18 C -0.243 4.243 19 H 0.069 0.931 20 C -0.010 4.010 21 N -0.930 5.930 22 Si 0.907 3.093 23 H -0.286 1.286 24 H -0.291 1.291 25 H -0.286 1.286 26 C -0.077 4.077 27 C -0.130 4.130 28 C -0.141 4.141 29 C -0.141 4.141 30 H 0.070 0.930 31 H 0.079 0.921 32 H 0.088 0.912 33 H 0.131 0.869 34 H 0.123 0.877 35 H 0.121 0.879 36 H 0.127 0.873 37 H 0.131 0.869 38 H 0.403 0.597 39 H 0.029 0.971 40 H 0.036 0.964 41 H 0.386 0.614 42 H 0.256 0.744 43 H 0.062 0.938 44 H 0.042 0.958 45 H 0.050 0.950 46 H 0.062 0.938 47 H 0.052 0.948 48 H 0.056 0.944 49 H 0.051 0.949 50 H 0.049 0.951 51 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.943 7.517 12.109 19.253 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.008 3.992 3 H 0.110 0.890 4 O -0.196 6.196 5 C 0.090 3.910 6 C -0.232 4.232 7 C -0.098 4.098 8 C -0.183 4.183 9 C -0.100 4.100 10 C -0.171 4.171 11 C 0.305 3.695 12 O -0.395 6.395 13 N -0.355 5.355 14 C 0.047 3.953 15 H 0.106 0.894 16 C 0.014 3.986 17 N -0.376 5.376 18 C -0.374 4.374 19 H 0.087 0.913 20 C -0.207 4.207 21 N -0.578 5.578 22 Si 0.738 3.262 23 H -0.213 1.213 24 H -0.217 1.217 25 H -0.213 1.213 26 C -0.078 4.078 27 C -0.187 4.187 28 C -0.198 4.198 29 C -0.198 4.198 30 H 0.089 0.911 31 H 0.098 0.902 32 H 0.107 0.893 33 H 0.149 0.851 34 H 0.141 0.859 35 H 0.139 0.861 36 H 0.145 0.855 37 H 0.149 0.851 38 H 0.238 0.762 39 H 0.047 0.953 40 H 0.054 0.946 41 H 0.220 0.780 42 H 0.066 0.934 43 H 0.081 0.919 44 H 0.061 0.939 45 H 0.069 0.931 46 H 0.081 0.919 47 H 0.071 0.929 48 H 0.075 0.925 49 H 0.070 0.930 50 H 0.068 0.932 51 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 13.337 6.588 11.996 19.110 hybrid contribution -1.312 0.683 -0.500 1.561 sum 12.025 7.271 11.496 18.156 Atomic orbital electron populations 1.22331 0.91788 1.05171 1.04014 1.22259 0.96306 0.96541 0.84092 0.88961 1.86222 1.80663 1.37089 1.15614 1.19125 0.94692 0.90286 0.86875 1.21369 1.07044 0.94460 1.00304 1.20948 0.97158 0.99415 0.92283 1.21042 1.02596 0.95954 0.98692 1.20958 0.97958 0.94021 0.97032 1.20485 1.03856 1.01480 0.91272 1.19829 0.79965 0.85648 0.84096 1.90720 1.39526 1.22894 1.86340 1.45785 1.56942 1.27916 1.04824 1.21302 0.91879 0.97799 0.84345 0.89442 1.21103 0.85613 0.98158 0.93741 1.42351 0.99897 1.77210 1.18144 1.19149 0.86911 1.35491 0.95849 0.91256 1.24731 0.97181 1.01699 0.97070 1.69652 1.17295 1.49532 1.21344 0.86287 0.81375 0.77867 0.80720 1.21289 1.21716 1.21307 1.20909 0.94978 0.95893 0.96054 1.21886 0.97677 1.02245 0.96888 1.21885 1.00563 1.00372 0.97025 1.21914 1.01242 0.94855 1.01837 0.91126 0.90245 0.89334 0.85135 0.85854 0.86093 0.85490 0.85107 0.76179 0.95323 0.94626 0.78038 0.93445 0.91944 0.93936 0.93094 0.91863 0.92869 0.92525 0.93002 0.93164 0.91837 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.37 9.12 37.16 0.34 -2.03 16 2 C 0.07 0.93 2.64 -27.89 -0.07 0.86 16 3 H 0.09 1.03 6.31 -51.93 -0.33 0.70 16 4 O -0.28 -4.33 9.34 -39.31 -0.37 -4.70 16 5 C 0.14 1.78 6.60 -39.22 -0.26 1.53 16 6 C -0.21 -2.38 8.24 -39.43 -0.32 -2.70 16 7 C -0.08 -0.77 10.04 -39.61 -0.40 -1.17 16 8 C -0.16 -1.50 10.04 -39.56 -0.40 -1.90 16 9 C -0.08 -0.78 10.04 -39.61 -0.40 -1.18 16 10 C -0.15 -1.80 9.99 -39.43 -0.39 -2.19 16 11 C 0.52 8.43 5.54 -10.99 -0.06 8.37 16 12 O -0.52 -10.11 13.63 -14.31 -0.19 -10.31 16 13 N -0.70 -10.69 3.60 -53.81 -0.19 -10.89 16 14 C 0.15 2.45 1.69 -67.93 -0.11 2.34 16 15 H 0.09 1.66 7.58 -51.93 -0.39 1.26 16 16 C 0.14 2.62 5.10 -4.04 -0.02 2.60 16 17 N -0.73 -17.34 5.43 -59.91 -0.33 -17.67 16 18 C -0.24 -6.47 9.99 -15.06 -0.15 -6.62 16 19 H 0.07 1.79 7.83 -52.49 -0.41 1.38 16 20 C -0.01 -0.29 5.50 -17.43 -0.10 -0.39 16 21 N -0.93 -27.11 13.06 55.49 0.72 -26.38 16 22 Si 0.91 21.79 29.55 -169.99 -5.02 16.77 16 23 H -0.29 -6.84 7.11 56.52 0.40 -6.43 16 24 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 25 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 26 C -0.08 -1.04 0.62 -154.51 -0.10 -1.13 16 27 C -0.13 -1.83 7.00 37.16 0.26 -1.57 16 28 C -0.14 -1.77 8.12 37.16 0.30 -1.46 16 29 C -0.14 -1.70 7.97 37.16 0.30 -1.40 16 30 H 0.07 0.83 6.91 -51.93 -0.36 0.47 16 31 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 32 H 0.09 1.20 7.92 -51.93 -0.41 0.79 16 33 H 0.13 1.29 5.43 -52.48 -0.29 1.00 16 34 H 0.12 0.90 8.06 -52.49 -0.42 0.48 16 35 H 0.12 0.82 8.06 -52.49 -0.42 0.39 16 36 H 0.13 0.89 8.06 -52.49 -0.42 0.47 16 37 H 0.13 1.46 8.06 -52.48 -0.42 1.04 16 38 H 0.40 5.71 8.38 -40.82 -0.34 5.37 16 39 H 0.03 0.52 6.17 -51.93 -0.32 0.20 16 40 H 0.04 0.68 6.71 -51.93 -0.35 0.33 16 41 H 0.39 9.78 7.33 -40.82 -0.30 9.48 16 42 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 43 H 0.06 0.99 7.53 -51.93 -0.39 0.60 16 44 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 45 H 0.05 0.77 5.77 -51.93 -0.30 0.47 16 46 H 0.06 0.80 6.54 -51.93 -0.34 0.46 16 47 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 48 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 49 H 0.05 0.61 7.60 -51.93 -0.39 0.21 16 50 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 51 H 0.06 0.78 6.32 -51.93 -0.33 0.45 16 LS Contribution 399.76 15.07 6.02 6.02 Total: -1.00 -31.54 399.76 -9.13 -40.67 By element: Atomic # 1 Polarization: 22.73 SS G_CDS: -8.19 Total: 14.53 kcal Atomic # 6 Polarization: -6.46 SS G_CDS: -1.58 Total: -8.05 kcal Atomic # 7 Polarization: -55.14 SS G_CDS: 0.21 Total: -54.94 kcal Atomic # 8 Polarization: -14.45 SS G_CDS: -0.56 Total: -15.01 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.77 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -31.54 -9.13 -40.67 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001508031128.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.578 kcal (2) G-P(sol) polarization free energy of solvation -31.536 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.114 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.133 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.668 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.247 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds