Wall clock time and date at job start Tue Mar 31 2020 18:03:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09006 * 109.46580 * 2 1 4 4 O 1.42896 * 109.47211 * 119.99711 * 2 1 3 5 5 C 1.35907 * 117.00171 * 275.32908 * 4 2 1 6 6 C 1.38732 * 120.05573 * 5.08150 * 5 4 2 7 7 C 1.38145 * 119.94477 * 179.74892 * 6 5 4 8 8 C 1.38265 * 120.05157 * 0.50520 * 7 6 5 9 9 C 1.38263 * 120.11487 * 359.77436 * 8 7 6 10 10 C 1.38146 * 120.05442 * 359.97081 * 9 8 7 11 11 C 1.50692 * 109.47090 * 240.00059 * 2 1 3 12 12 O 1.21285 * 120.00019 * 244.98999 * 11 2 1 13 13 N 1.34770 * 120.00243 * 65.00092 * 11 2 1 14 14 C 1.46501 * 120.00195 * 180.02562 * 13 11 2 15 15 H 1.08996 * 109.47454 * 34.99252 * 14 13 11 16 16 C 1.52999 * 109.47535 * 154.99904 * 14 13 11 17 17 N 1.46504 * 109.46985 * 304.99841 * 16 14 13 18 18 C 1.36929 * 119.99957 * 179.97438 * 17 16 14 19 19 H 1.07999 * 120.00625 * 0.02562 * 18 17 16 20 20 C 1.38818 * 119.99932 * 180.02562 * 18 17 16 21 21 N 1.31622 * 119.99587 * 359.97438 * 20 18 17 22 22 Si 1.86794 * 120.00163 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.47292 * 59.99565 * 22 20 18 24 24 H 1.48504 * 109.47023 * 180.02562 * 22 20 18 25 25 H 1.48507 * 109.47219 * 299.99617 * 22 20 18 26 26 C 1.53006 * 109.46995 * 274.99695 * 14 13 11 27 27 C 1.52997 * 109.47081 * 59.99503 * 26 14 13 28 28 C 1.53000 * 109.47215 * 180.02562 * 26 14 13 29 29 C 1.53002 * 109.47117 * 299.99880 * 26 14 13 30 30 H 1.09002 * 109.47572 * 300.00119 * 1 2 3 31 31 H 1.09005 * 109.47308 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.47252 * 60.00263 * 1 2 3 33 33 H 1.08006 * 120.02488 * 359.97438 * 6 5 4 34 34 H 1.07997 * 119.97226 * 180.23524 * 7 6 5 35 35 H 1.08001 * 119.94045 * 179.74739 * 8 7 6 36 36 H 1.07998 * 119.97266 * 179.97438 * 9 8 7 37 37 H 1.08005 * 120.02435 * 179.97438 * 10 9 8 38 38 H 0.97001 * 120.00404 * 359.97438 * 13 11 2 39 39 H 1.09003 * 109.47025 * 64.99621 * 16 14 13 40 40 H 1.09000 * 109.47484 * 184.99870 * 16 14 13 41 41 H 0.97007 * 119.99662 * 359.97438 * 17 16 14 42 42 H 0.97004 * 119.99537 * 180.02562 * 21 20 18 43 43 H 1.09005 * 109.46864 * 60.00542 * 27 26 14 44 44 H 1.09003 * 109.46708 * 179.97438 * 27 26 14 45 45 H 1.08993 * 109.47691 * 300.00166 * 27 26 14 46 46 H 1.08995 * 109.47240 * 60.00043 * 28 26 14 47 47 H 1.08998 * 109.47078 * 179.97438 * 28 26 14 48 48 H 1.09003 * 109.46663 * 299.99792 * 28 26 14 49 49 H 1.09002 * 109.47102 * 59.99629 * 29 26 14 50 50 H 1.08998 * 109.47380 * 179.97438 * 29 26 14 51 51 H 1.09004 * 109.47224 * 300.00100 * 29 26 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0278 0.0000 4 8 2.0063 -0.6736 1.1668 5 6 2.1060 0.0610 2.3059 6 6 1.6543 1.3726 2.3286 7 6 1.7519 2.1155 3.4891 8 6 2.3088 1.5563 4.6244 9 6 2.7650 0.2513 4.6027 10 6 2.6648 -0.4975 3.4461 11 6 2.0323 -0.7104 -1.2304 12 8 2.6531 -1.7466 -1.1214 13 7 1.7919 -0.1942 -2.4519 14 6 2.2797 -0.8851 -3.6481 15 1 2.2323 -1.9625 -3.4902 16 6 1.4079 -0.5065 -4.8471 17 7 0.0042 -0.7916 -4.5395 18 6 -0.9669 -0.5315 -5.4692 19 1 -0.6980 -0.1166 -6.4294 20 6 -2.2970 -0.8012 -5.1776 21 7 -2.6247 -1.3073 -4.0076 22 14 -3.6217 -0.4471 -6.4461 23 1 -3.3558 -1.2391 -7.6738 24 1 -4.9486 -0.8199 -5.8935 25 1 -3.6138 1.0001 -6.7794 26 6 3.7279 -0.4728 -3.9202 27 6 4.5997 -0.8514 -2.7213 28 6 4.2372 -1.1939 -5.1698 29 6 3.7945 1.0396 -4.1419 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3634 0.5138 -0.8900 33 1 1.2233 1.8112 1.4407 34 1 1.3970 3.1353 3.5084 35 1 2.3880 2.1401 5.5296 36 1 3.2000 -0.1830 5.4907 37 1 3.0217 -1.5167 3.4296 38 1 1.2952 0.6345 -2.5392 39 1 1.5246 0.5562 -5.0600 40 1 1.7144 -1.0872 -5.7171 41 1 -0.2373 -1.1646 -3.6772 42 1 -3.5541 -1.4961 -3.8040 43 1 4.5522 -1.9289 -2.5633 44 1 5.6314 -0.5581 -2.9154 45 1 4.2368 -0.3374 -1.8313 46 1 3.6160 -0.9238 -6.0237 47 1 5.2687 -0.8999 -5.3639 48 1 4.1896 -2.2714 -5.0123 49 1 3.4315 1.5536 -3.2520 50 1 4.8262 1.3333 -4.3353 51 1 3.1733 1.3093 -4.9961 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001508031128.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:03:16 Heat of formation + Delta-G solvation = -60.280186 kcal Electronic energy + Delta-G solvation = -30035.613084 eV Core-core repulsion = 26127.804411 eV Total energy + Delta-G solvation = -3907.808674 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.84612 -40.84069 -38.96413 -37.99636 -36.18969 -34.86399 -33.32381 -32.65348 -31.68373 -30.57543 -29.32127 -28.15097 -27.87271 -26.07708 -25.33062 -23.80140 -23.30397 -22.80312 -21.33055 -19.91017 -19.39434 -19.19670 -18.14620 -17.42563 -17.05744 -16.84848 -16.65887 -16.24306 -16.13449 -15.54934 -15.33563 -15.21681 -15.04690 -14.84262 -14.59260 -14.38520 -14.21164 -14.10056 -13.70341 -13.58785 -13.34486 -13.05664 -13.01447 -12.93305 -12.86664 -12.71409 -12.53651 -12.44081 -12.38290 -12.22905 -12.07032 -12.03058 -11.74919 -11.74457 -11.63573 -11.30754 -10.93498 -10.73887 -9.95049 -9.93853 -9.18114 -8.96878 -7.91606 -5.20614 0.39957 0.48719 1.49565 1.50200 1.51802 1.57521 1.62247 2.56665 2.60888 2.85513 3.42152 3.49728 3.64304 3.67836 3.81907 3.87203 3.94648 4.00657 4.03834 4.25365 4.29336 4.33819 4.39727 4.44112 4.52163 4.59511 4.63196 4.64118 4.75784 4.81030 4.83522 4.90058 4.95737 5.05799 5.07937 5.08959 5.10900 5.15916 5.23693 5.30737 5.37377 5.41639 5.49129 5.51986 5.55171 5.61083 5.61727 5.85735 6.28553 6.35943 6.54281 7.19190 7.36455 8.09867 8.33987 9.30787 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.010485 B = 0.003389 C = 0.002741 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2669.902172 B = 8260.461642 C =10212.047908 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.076 3.924 3 H 0.123 0.877 4 O -0.312 6.312 5 C 0.105 3.895 6 C -0.220 4.220 7 C -0.082 4.082 8 C -0.161 4.161 9 C -0.081 4.081 10 C -0.173 4.173 11 C 0.517 3.483 12 O -0.558 6.558 13 N -0.695 5.695 14 C 0.160 3.840 15 H 0.053 0.947 16 C 0.145 3.855 17 N -0.742 5.742 18 C -0.242 4.242 19 H 0.078 0.922 20 C -0.070 4.070 21 N -0.965 5.965 22 Si 0.969 3.031 23 H -0.283 1.283 24 H -0.300 1.300 25 H -0.275 1.275 26 C -0.070 4.070 27 C -0.121 4.121 28 C -0.140 4.140 29 C -0.137 4.137 30 H 0.090 0.910 31 H 0.049 0.951 32 H 0.087 0.913 33 H 0.141 0.859 34 H 0.151 0.849 35 H 0.151 0.849 36 H 0.153 0.847 37 H 0.124 0.876 38 H 0.410 0.590 39 H 0.048 0.952 40 H 0.037 0.963 41 H 0.374 0.626 42 H 0.249 0.751 43 H 0.037 0.963 44 H 0.063 0.937 45 H 0.038 0.962 46 H 0.063 0.937 47 H 0.075 0.925 48 H 0.045 0.955 49 H 0.054 0.946 50 H 0.069 0.931 51 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.885 10.314 12.315 21.233 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.016 3.984 3 H 0.140 0.860 4 O -0.226 6.226 5 C 0.060 3.940 6 C -0.238 4.238 7 C -0.100 4.100 8 C -0.179 4.179 9 C -0.099 4.099 10 C -0.192 4.192 11 C 0.303 3.697 12 O -0.437 6.437 13 N -0.347 5.347 14 C 0.055 3.945 15 H 0.071 0.929 16 C 0.019 3.981 17 N -0.385 5.385 18 C -0.374 4.374 19 H 0.096 0.904 20 C -0.263 4.263 21 N -0.616 5.616 22 Si 0.799 3.201 23 H -0.209 1.209 24 H -0.227 1.227 25 H -0.201 1.201 26 C -0.072 4.072 27 C -0.178 4.178 28 C -0.197 4.197 29 C -0.194 4.194 30 H 0.109 0.891 31 H 0.068 0.932 32 H 0.106 0.894 33 H 0.158 0.842 34 H 0.168 0.832 35 H 0.169 0.831 36 H 0.170 0.830 37 H 0.142 0.858 38 H 0.246 0.754 39 H 0.066 0.934 40 H 0.055 0.945 41 H 0.206 0.794 42 H 0.058 0.942 43 H 0.056 0.944 44 H 0.082 0.918 45 H 0.057 0.943 46 H 0.082 0.918 47 H 0.094 0.906 48 H 0.064 0.936 49 H 0.073 0.927 50 H 0.088 0.912 51 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 14.311 9.424 12.174 21.020 hybrid contribution -1.517 -0.189 -0.495 1.607 sum 12.794 9.235 11.679 19.631 Atomic orbital electron populations 1.22246 0.91794 1.03459 1.04895 1.22196 0.96000 0.97364 0.82803 0.85981 1.86177 1.81369 1.38485 1.16543 1.19434 0.96694 0.91394 0.86497 1.21545 1.07008 0.93749 1.01524 1.21336 0.96469 1.00501 0.91712 1.21466 1.01024 0.95776 0.99635 1.21295 0.97379 0.94294 0.96955 1.20693 1.04645 1.01782 0.92070 1.20334 0.79224 0.85219 0.84969 1.90699 1.41392 1.24644 1.86920 1.45704 1.56644 1.27852 1.04460 1.21124 0.93513 0.96015 0.83871 0.92865 1.21227 0.83276 0.98995 0.94640 1.42524 1.01652 1.77098 1.17252 1.19556 0.87571 1.33885 0.96357 0.90393 1.25485 0.99356 1.02608 0.98857 1.69817 1.17049 1.51478 1.23228 0.85279 0.78312 0.78108 0.78414 1.20910 1.22652 1.20084 1.20863 0.92557 0.97465 0.96305 1.21779 0.98970 1.00468 0.96623 1.21886 1.01900 0.99649 0.96292 1.21882 1.02600 0.92997 1.01951 0.89113 0.93213 0.89437 0.84167 0.83162 0.83138 0.82959 0.85796 0.75360 0.93402 0.94505 0.79407 0.94220 0.94412 0.91766 0.94262 0.91839 0.90613 0.93593 0.92718 0.91191 0.91835 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.61 9.12 71.98 0.66 -3.95 16 2 C 0.08 2.12 2.64 29.84 0.08 2.20 16 3 H 0.12 2.61 6.31 -2.38 -0.02 2.60 16 4 O -0.31 -9.95 9.34 -73.51 -0.69 -10.64 16 5 C 0.10 2.76 6.60 22.51 0.15 2.91 16 6 C -0.22 -4.60 8.24 22.37 0.18 -4.42 16 7 C -0.08 -1.36 10.04 22.25 0.22 -1.13 16 8 C -0.16 -2.46 10.04 22.28 0.22 -2.23 16 9 C -0.08 -1.42 10.04 22.25 0.22 -1.20 16 10 C -0.17 -4.12 9.99 22.37 0.22 -3.89 16 11 C 0.52 17.42 5.54 87.66 0.49 17.90 16 12 O -0.56 -23.05 13.63 15.95 0.22 -22.84 16 13 N -0.69 -21.51 3.60 -442.54 -1.59 -23.10 16 14 C 0.16 5.26 1.69 44.99 0.08 5.33 16 15 H 0.05 2.13 7.58 -2.39 -0.02 2.12 16 16 C 0.15 5.31 5.10 86.38 0.44 5.75 16 17 N -0.74 -35.50 5.43 -343.44 -1.87 -37.37 16 18 C -0.24 -12.82 9.99 84.04 0.84 -11.98 16 19 H 0.08 3.93 7.83 -2.91 -0.02 3.90 16 20 C -0.07 -3.90 5.50 84.86 0.47 -3.43 16 21 N -0.97 -57.41 13.06 21.65 0.28 -57.13 16 22 Si 0.97 44.84 29.55 68.60 2.03 46.86 16 23 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 24 H -0.30 -14.19 7.11 99.48 0.71 -13.48 16 25 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 26 C -0.07 -1.84 0.62 -52.18 -0.03 -1.87 16 27 C -0.12 -3.38 7.00 71.98 0.50 -2.88 16 28 C -0.14 -3.32 8.12 71.98 0.58 -2.74 16 29 C -0.14 -2.96 7.97 71.98 0.57 -2.38 16 30 H 0.09 2.11 6.91 -2.39 -0.02 2.09 16 31 H 0.05 1.66 8.14 -2.38 -0.02 1.64 16 32 H 0.09 2.41 7.92 -2.39 -0.02 2.39 16 33 H 0.14 2.52 5.43 -2.91 -0.02 2.50 16 34 H 0.15 1.62 8.06 -2.91 -0.02 1.60 16 35 H 0.15 1.40 8.06 -2.91 -0.02 1.37 16 36 H 0.15 1.78 8.06 -2.91 -0.02 1.75 16 37 H 0.12 2.95 8.06 -2.91 -0.02 2.93 16 38 H 0.41 11.53 8.38 -92.71 -0.78 10.75 16 39 H 0.05 1.62 6.17 -2.39 -0.01 1.61 16 40 H 0.04 1.37 6.71 -2.39 -0.02 1.36 16 41 H 0.37 19.53 7.33 -92.70 -0.68 18.85 16 42 H 0.25 14.56 8.31 -92.71 -0.77 13.79 16 43 H 0.04 1.23 7.53 -2.38 -0.02 1.21 16 44 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 45 H 0.04 1.18 5.77 -2.39 -0.01 1.16 16 46 H 0.06 1.50 6.54 -2.39 -0.02 1.49 16 47 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 48 H 0.04 1.18 8.14 -2.39 -0.02 1.16 16 49 H 0.05 1.15 7.60 -2.39 -0.02 1.13 16 50 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 51 H 0.06 1.38 6.32 -2.38 -0.02 1.37 16 Total: -1.00 -69.98 399.76 3.76 -66.22 By element: Atomic # 1 Polarization: 46.53 SS G_CDS: -0.52 Total: 46.01 kcal Atomic # 6 Polarization: -13.92 SS G_CDS: 5.90 Total: -8.02 kcal Atomic # 7 Polarization: -114.42 SS G_CDS: -3.18 Total: -117.60 kcal Atomic # 8 Polarization: -33.00 SS G_CDS: -0.47 Total: -33.47 kcal Atomic # 14 Polarization: 44.84 SS G_CDS: 2.03 Total: 46.86 kcal Total: -69.98 3.76 -66.22 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001508031128.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.940 kcal (2) G-P(sol) polarization free energy of solvation -69.983 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.043 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.763 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.220 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.280 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds