Wall clock time and date at job start Tue Mar 31 2020 18:53:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46499 * 109.46824 * 2 1 4 4 C 1.36939 * 120.00015 * 270.32183 * 3 2 1 5 5 H 1.08003 * 119.99909 * 326.14002 * 4 3 2 6 6 C 1.38810 * 120.00189 * 146.14685 * 4 3 2 7 7 N 1.31622 * 120.00096 * 336.89947 * 6 4 3 8 8 Si 1.86805 * 120.00200 * 156.90802 * 6 4 3 9 9 H 1.48501 * 109.47123 * 59.99627 * 8 6 4 10 10 H 1.48496 * 109.46986 * 179.97438 * 8 6 4 11 11 H 1.48492 * 109.46753 * 299.99571 * 8 6 4 12 12 C 1.46506 * 120.00384 * 90.32565 * 3 2 1 13 13 C 1.52994 * 109.47279 * 89.99847 * 12 3 2 14 14 N 1.46501 * 109.46903 * 180.02562 * 13 12 3 15 15 C 1.34775 * 119.99866 * 179.97438 * 14 13 12 16 16 O 1.21278 * 120.00112 * 0.02562 * 15 14 13 17 17 C 1.50701 * 120.00028 * 179.97438 * 15 14 13 18 18 C 1.52998 * 109.47330 * 180.02562 * 17 15 14 19 19 C 1.50701 * 109.47330 * 179.97438 * 18 17 15 20 20 C 1.34510 * 125.78709 * 89.99746 * 19 18 17 21 21 C 1.41381 * 106.83832 * 179.79496 * 20 19 18 22 22 C 1.34519 * 106.84124 * 0.37100 * 21 20 19 23 23 C 1.50705 * 125.78994 * 179.88884 * 22 21 20 24 24 H 1.09004 * 115.54836 * 334.05167 * 23 22 21 25 25 C 1.52993 * 117.51595 * 188.35061 * 23 22 21 26 26 C 1.52997 * 117.49604 * 119.71929 * 23 22 21 27 27 H 1.09005 * 117.49577 * 215.02383 * 26 23 22 28 28 C 1.52994 * 117.50040 * 0.02562 * 26 23 22 29 29 O 1.34300 * 108.41989 * 359.62836 * 22 21 20 30 30 H 1.09005 * 109.46455 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47100 * 299.99896 * 1 2 3 32 32 H 1.09000 * 109.47106 * 60.00161 * 1 2 3 33 33 H 1.08994 * 109.47296 * 239.99762 * 2 1 3 34 34 H 1.08998 * 109.47326 * 119.99354 * 2 1 3 35 35 H 0.96992 * 120.00509 * 180.02562 * 7 6 4 36 36 H 1.09007 * 109.46436 * 329.99687 * 12 3 2 37 37 H 1.09003 * 109.46840 * 209.99846 * 12 3 2 38 38 H 1.08996 * 109.47119 * 60.00184 * 13 12 3 39 39 H 1.09003 * 109.47184 * 299.99788 * 13 12 3 40 40 H 0.97000 * 120.00274 * 359.97438 * 14 13 12 41 41 H 1.09002 * 109.47119 * 60.00039 * 17 15 14 42 42 H 1.09000 * 109.47281 * 300.00390 * 17 15 14 43 43 H 1.09002 * 109.47189 * 59.99836 * 18 17 15 44 44 H 1.09000 * 109.47056 * 300.00281 * 18 17 15 45 45 H 1.07997 * 126.58233 * 0.04866 * 20 19 18 46 46 H 1.08007 * 126.58249 * 180.24453 * 21 20 19 47 47 H 1.09005 * 117.49825 * 145.02996 * 25 23 22 48 48 H 1.08994 * 117.50225 * 0.02562 * 25 23 22 49 49 H 1.09002 * 109.47124 * 60.00418 * 28 26 23 50 50 H 1.09001 * 109.47427 * 300.00071 * 28 26 23 51 51 H 1.09002 * 109.46651 * 179.97438 * 28 26 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2402 2.0290 -1.1859 5 1 2.5928 1.4773 -2.0448 6 6 2.0121 3.3947 -1.2841 7 7 1.1856 3.9857 -0.4475 8 14 2.8780 4.3939 -2.6037 9 1 2.5076 3.8710 -3.9434 10 1 2.4666 5.8167 -2.4971 11 1 4.3477 4.2880 -2.4201 12 6 2.2692 2.0696 1.2687 13 6 3.7165 1.8284 1.7022 14 7 3.9672 2.5162 2.9712 15 6 5.1829 2.4433 3.5485 16 8 6.0694 1.8087 3.0172 17 6 5.4410 3.1514 4.8535 18 6 6.8883 2.9101 5.2872 19 6 7.1465 3.6187 6.5919 20 6 6.9691 3.0969 7.8189 21 6 7.3342 4.0991 8.7469 22 6 7.7050 5.1762 8.0314 23 6 8.1736 6.4918 8.5979 24 1 7.8115 6.7285 9.5984 25 6 8.3628 7.6544 7.6216 26 6 9.5830 6.9583 8.2279 27 1 10.1482 7.5017 8.9851 28 6 10.4085 6.0538 7.3107 29 8 7.5924 4.8784 6.7267 30 1 -0.3632 -1.0278 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 1.8934 -0.5138 -0.8899 34 1 1.8934 -0.5137 0.8900 35 1 1.0259 4.9399 -0.5162 36 1 1.5924 1.6840 2.0312 37 1 2.1015 3.1390 1.1412 38 1 4.3932 2.2140 0.9397 39 1 3.8842 0.7589 1.8297 40 1 3.2583 3.0241 3.3959 41 1 4.7639 2.7662 5.6160 42 1 5.2737 4.2209 4.7260 43 1 7.5651 3.2956 4.5246 44 1 7.0559 1.8407 5.4146 45 1 6.6192 2.1018 8.0507 46 1 7.3166 4.0166 9.8236 47 1 8.1252 8.6562 7.9797 48 1 8.1480 7.4681 6.5694 49 1 9.8884 5.9275 6.3612 50 1 10.5421 5.0811 7.7841 51 1 11.3829 6.5089 7.1331 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001567337999.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:53:06 Heat of formation + Delta-G solvation = 4.511966 kcal Electronic energy + Delta-G solvation = -27974.280349 eV Core-core repulsion = 24069.281274 eV Total energy + Delta-G solvation = -3904.999075 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -42.80752 -39.36188 -38.10611 -36.32881 -34.23078 -33.93378 -32.95611 -31.84067 -30.05772 -29.36368 -28.49308 -27.36947 -25.08619 -23.85482 -22.50818 -22.08307 -21.94236 -20.89281 -20.19512 -19.91715 -19.77417 -17.31667 -16.68366 -16.52312 -16.01065 -15.91547 -15.58778 -15.34603 -14.86356 -14.61353 -14.07720 -13.83060 -13.64717 -13.52197 -13.36695 -13.16150 -13.00202 -12.81250 -12.63761 -12.41730 -12.33474 -12.13142 -12.07610 -12.01771 -11.81440 -11.20830 -11.16127 -11.09005 -10.92124 -10.87756 -10.65504 -10.41564 -10.37702 -10.06898 -9.97593 -9.94151 -9.80425 -9.53974 -8.59047 -8.47701 -8.33179 -6.69223 -5.84256 -3.37798 1.48229 2.39743 2.65412 2.94596 3.35860 3.41874 3.45980 3.46525 3.60201 4.12725 4.30410 4.45489 4.48150 4.61964 4.82395 4.86681 4.92014 4.95239 5.06820 5.19240 5.28013 5.30682 5.41225 5.46887 5.47068 5.54907 5.56272 5.61169 5.68851 5.73773 5.82826 5.91336 5.94955 6.06315 6.07196 6.13224 6.17700 6.38326 6.40076 6.51923 6.54086 6.64028 6.87885 6.94887 7.04525 7.05269 7.22637 7.58362 7.78265 7.92429 8.44382 8.57709 9.12586 9.76418 10.31890 11.16315 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.014874 B = 0.002050 C = 0.001898 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1882.070915 B =13653.577864 C =14746.057821 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.141 3.859 3 N -0.581 5.581 4 C -0.257 4.257 5 H 0.064 0.936 6 C 0.009 3.991 7 N -0.888 5.888 8 Si 0.897 3.103 9 H -0.281 1.281 10 H -0.290 1.290 11 H -0.282 1.282 12 C 0.133 3.867 13 C 0.099 3.901 14 N -0.719 5.719 15 C 0.507 3.493 16 O -0.550 6.550 17 C -0.138 4.138 18 C -0.023 4.023 19 C -0.005 4.005 20 C -0.208 4.208 21 C -0.205 4.205 22 C 0.019 3.981 23 C -0.083 4.083 24 H 0.132 0.868 25 C -0.167 4.167 26 C -0.140 4.140 27 H 0.112 0.888 28 C -0.126 4.126 29 O -0.170 6.170 30 H 0.031 0.969 31 H 0.042 0.958 32 H 0.054 0.946 33 H 0.043 0.957 34 H 0.033 0.967 35 H 0.255 0.745 36 H 0.027 0.973 37 H 0.105 0.895 38 H 0.065 0.935 39 H 0.048 0.952 40 H 0.398 0.602 41 H 0.096 0.904 42 H 0.095 0.905 43 H 0.088 0.912 44 H 0.102 0.898 45 H 0.148 0.852 46 H 0.145 0.855 47 H 0.102 0.898 48 H 0.102 0.898 49 H 0.061 0.939 50 H 0.059 0.941 51 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.680 3.832 20.770 24.135 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.015 3.985 3 N -0.301 5.301 4 C -0.387 4.387 5 H 0.081 0.919 6 C -0.191 4.191 7 N -0.531 5.531 8 Si 0.726 3.274 9 H -0.207 1.207 10 H -0.216 1.216 11 H -0.208 1.208 12 C 0.005 3.995 13 C -0.027 4.027 14 N -0.370 5.370 15 C 0.293 3.707 16 O -0.429 6.429 17 C -0.178 4.178 18 C -0.061 4.061 19 C -0.055 4.055 20 C -0.227 4.227 21 C -0.224 4.224 22 C -0.031 4.031 23 C -0.101 4.101 24 H 0.150 0.850 25 C -0.204 4.204 26 C -0.158 4.158 27 H 0.130 0.870 28 C -0.183 4.183 29 O -0.067 6.067 30 H 0.050 0.950 31 H 0.061 0.939 32 H 0.074 0.926 33 H 0.062 0.938 34 H 0.052 0.948 35 H 0.065 0.935 36 H 0.046 0.954 37 H 0.123 0.877 38 H 0.083 0.917 39 H 0.067 0.933 40 H 0.231 0.769 41 H 0.114 0.886 42 H 0.113 0.887 43 H 0.107 0.893 44 H 0.120 0.880 45 H 0.165 0.835 46 H 0.163 0.837 47 H 0.120 0.880 48 H 0.121 0.879 49 H 0.080 0.920 50 H 0.078 0.922 51 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 12.291 3.712 20.098 23.849 hybrid contribution -0.161 0.739 -0.159 0.773 sum 12.131 4.452 19.939 23.760 Atomic orbital electron populations 1.22268 0.99590 0.98417 1.01897 1.20905 0.92049 0.87230 0.98339 1.43708 1.74326 1.10106 1.01990 1.19061 1.38103 0.91209 0.90310 0.91873 1.25072 0.97295 0.98517 0.98230 1.69954 1.33338 1.10349 1.39453 0.86458 0.80097 0.79098 0.81747 1.20701 1.21618 1.20837 1.21105 0.89111 1.02641 0.86619 1.22335 1.01927 0.95430 0.82968 1.46122 1.12603 1.53113 1.25116 1.20470 0.82706 0.81231 0.86314 1.90689 1.44039 1.42952 1.65174 1.21672 0.97627 1.02492 0.96038 1.19850 0.96241 0.99786 0.90186 1.22464 1.02633 0.82950 0.97426 1.21563 1.08121 1.01464 0.91575 1.21445 1.07286 0.93206 1.00441 1.21224 1.04906 0.96374 0.80631 1.20597 1.00576 0.89349 0.99535 0.84978 1.23208 1.01508 0.96263 0.99392 1.22509 0.89384 1.01740 1.02138 0.87003 1.21385 0.99344 0.98654 0.98901 1.83945 1.66194 1.29518 1.27003 0.95027 0.93857 0.92637 0.93827 0.94811 0.93509 0.95444 0.87737 0.91709 0.93328 0.76861 0.88608 0.88685 0.89299 0.87990 0.83454 0.83709 0.87976 0.87945 0.91954 0.92162 0.91940 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.18 10.24 37.16 0.38 -2.80 16 2 C 0.14 2.93 6.39 -4.04 -0.03 2.91 16 3 N -0.58 -14.02 2.45 -173.24 -0.42 -14.44 16 4 C -0.26 -6.87 9.49 -15.06 -0.14 -7.02 16 5 H 0.06 1.70 7.93 -52.48 -0.42 1.28 16 6 C 0.01 0.23 4.95 -17.43 -0.09 0.15 16 7 N -0.89 -24.56 11.31 55.49 0.63 -23.94 16 8 Si 0.90 21.40 29.61 -169.99 -5.03 16.37 16 9 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 10 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 11 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 12 C 0.13 2.93 5.41 -4.04 -0.02 2.91 16 13 C 0.10 1.99 6.00 -4.04 -0.02 1.97 16 14 N -0.72 -11.73 5.56 -60.30 -0.33 -12.06 16 15 C 0.51 8.06 7.83 -10.99 -0.09 7.98 16 16 O -0.55 -10.86 15.98 5.56 0.09 -10.77 16 17 C -0.14 -1.58 5.68 -27.88 -0.16 -1.74 16 18 C -0.02 -0.26 5.04 -27.88 -0.14 -0.41 16 19 C 0.00 -0.05 6.57 -35.63 -0.23 -0.29 16 20 C -0.21 -2.19 10.81 -39.70 -0.43 -2.61 16 21 C -0.20 -2.05 10.81 -39.70 -0.43 -2.48 16 22 C 0.02 0.19 5.89 -35.62 -0.21 -0.02 16 23 C -0.08 -0.65 6.24 -91.77 -0.57 -1.22 16 24 H 0.13 0.78 8.14 -51.93 -0.42 0.35 16 25 C -0.17 -1.24 9.81 -26.73 -0.26 -1.50 16 26 C -0.14 -0.99 6.41 -90.62 -0.58 -1.57 16 27 H 0.11 0.60 8.14 -51.93 -0.42 0.18 16 28 C -0.13 -1.01 9.15 37.15 0.34 -0.67 16 29 O -0.17 -2.03 9.63 5.71 0.06 -1.98 16 30 H 0.03 0.52 8.14 -51.93 -0.42 0.09 16 31 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16 32 H 0.05 1.20 8.14 -51.93 -0.42 0.78 16 33 H 0.04 0.89 8.04 -51.93 -0.42 0.47 16 34 H 0.03 0.64 8.07 -51.93 -0.42 0.22 16 35 H 0.25 6.85 8.31 -40.82 -0.34 6.51 16 36 H 0.03 0.56 8.07 -51.93 -0.42 0.15 16 37 H 0.11 2.60 5.31 -51.93 -0.28 2.32 16 38 H 0.06 1.50 8.14 -51.93 -0.42 1.08 16 39 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 40 H 0.40 5.46 8.47 -40.82 -0.35 5.12 16 41 H 0.10 0.91 8.14 -51.93 -0.42 0.48 16 42 H 0.09 1.02 8.14 -51.93 -0.42 0.59 16 43 H 0.09 1.11 8.10 -51.93 -0.42 0.69 16 44 H 0.10 1.14 8.10 -51.93 -0.42 0.72 16 45 H 0.15 1.29 8.06 -52.49 -0.42 0.87 16 46 H 0.15 1.14 8.06 -52.48 -0.42 0.72 16 47 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 48 H 0.10 0.90 7.87 -51.93 -0.41 0.49 16 49 H 0.06 0.59 7.27 -51.93 -0.38 0.21 16 50 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 51 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 LS Contribution 421.94 15.07 6.36 6.36 Total: -1.00 -31.15 421.94 -10.32 -41.47 By element: Atomic # 1 Polarization: 14.38 SS G_CDS: -8.98 Total: 5.41 kcal Atomic # 6 Polarization: -3.74 SS G_CDS: -2.68 Total: -6.42 kcal Atomic # 7 Polarization: -50.31 SS G_CDS: -0.13 Total: -50.44 kcal Atomic # 8 Polarization: -12.89 SS G_CDS: 0.14 Total: -12.74 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.03 Total: 16.37 kcal Total LS contribution 6.36 Total: 6.36 kcal Total: -31.15 -10.32 -41.47 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567337999.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.986 kcal (2) G-P(sol) polarization free energy of solvation -31.152 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.834 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.322 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.474 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.512 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds