Wall clock time and date at job start Tue Mar 31 2020 18:53:13
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52999 * 1
3 3 N 1.46504 * 109.47341 * 2 1
4 4 C 1.36936 * 119.99959 * 266.22574 * 3 2 1
5 5 H 1.08000 * 119.99627 * 145.95087 * 4 3 2
6 6 C 1.38811 * 120.00350 * 325.95900 * 4 3 2
7 7 N 1.31624 * 119.99871 * 337.82446 * 6 4 3
8 8 Si 1.86801 * 120.00217 * 157.81855 * 6 4 3
9 9 H 1.48504 * 109.46725 * 60.00274 * 8 6 4
10 10 H 1.48494 * 109.47235 * 179.97438 * 8 6 4
11 11 H 1.48497 * 109.47258 * 300.00078 * 8 6 4
12 12 C 1.46496 * 119.99944 * 85.95567 * 3 2 1
13 13 C 1.52996 * 109.47215 * 89.99546 * 12 3 2
14 14 N 1.46508 * 109.46933 * 179.97438 * 13 12 3
15 15 C 1.34777 * 119.99782 * 180.02562 * 14 13 12
16 16 O 1.21279 * 120.00257 * 0.02562 * 15 14 13
17 17 C 1.50700 * 119.99728 * 179.97438 * 15 14 13
18 18 C 1.53002 * 109.47173 * 180.02562 * 17 15 14
19 19 C 1.50689 * 109.47448 * 180.02562 * 18 17 15
20 20 C 1.34516 * 125.79067 * 90.00118 * 19 18 17
21 21 C 1.41381 * 106.84380 * 180.02562 * 20 19 18
22 22 C 1.34512 * 106.83893 * 359.97438 * 21 20 19
23 23 C 1.50707 * 125.78828 * 180.02562 * 22 21 20
24 24 H 1.08998 * 115.54763 * 334.27930 * 23 22 21
25 25 C 1.52992 * 117.49919 * 188.61107 * 23 22 21
26 26 C 1.52995 * 117.49880 * 119.98792 * 23 22 21
27 27 H 1.08997 * 117.49870 * 0.02562 * 26 23 22
28 28 C 1.52999 * 117.49827 * 214.98054 * 26 23 22
29 29 O 1.34300 * 125.79424 * 269.69890 * 19 18 17
30 30 H 1.08996 * 109.47750 * 179.97438 * 1 2 3
31 31 H 1.09008 * 109.46723 * 299.99840 * 1 2 3
32 32 H 1.09002 * 109.47274 * 59.99456 * 1 2 3
33 33 H 1.09008 * 109.46723 * 240.00159 * 2 1 3
34 34 H 1.09002 * 109.47274 * 120.00544 * 2 1 3
35 35 H 0.96999 * 119.99774 * 179.97438 * 7 6 4
36 36 H 1.08994 * 109.46961 * 210.00096 * 12 3 2
37 37 H 1.09010 * 109.47007 * 329.99854 * 12 3 2
38 38 H 1.08994 * 109.47605 * 300.00156 * 13 12 3
39 39 H 1.08996 * 109.46853 * 60.00317 * 13 12 3
40 40 H 0.96996 * 119.99699 * 0.02562 * 14 13 12
41 41 H 1.08994 * 109.47308 * 300.00460 * 17 15 14
42 42 H 1.08996 * 109.46941 * 60.00493 * 17 15 14
43 43 H 1.09003 * 109.47339 * 300.01002 * 18 17 15
44 44 H 1.09002 * 109.46865 * 59.99660 * 18 17 15
45 45 H 1.08005 * 126.57548 * 359.96926 * 20 19 18
46 46 H 1.08004 * 126.57783 * 179.97438 * 21 20 19
47 47 H 1.09005 * 117.50168 * 359.97438 * 25 23 22
48 48 H 1.08998 * 117.50368 * 144.99296 * 25 23 22
49 49 H 1.09001 * 109.47133 * 60.00240 * 28 26 23
50 50 H 1.09000 * 109.47233 * 180.02562 * 28 26 23
51 51 H 1.09005 * 109.47137 * 299.99878 * 28 26 23
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 7 2.0184 1.3812 0.0000
4 6 2.3202 2.0007 -1.1833
5 1 2.1463 3.0605 -1.2978
6 6 2.8496 1.2667 -2.2358
7 7 3.4618 0.1256 -2.0000
8 14 2.6931 1.8981 -3.9869
9 1 3.3624 3.2190 -4.0984
10 1 3.3364 0.9376 -4.9189
11 1 1.2565 2.0401 -4.3354
12 6 2.1782 2.1016 1.2655
13 6 3.5904 1.8727 1.8079
14 7 3.7503 2.5936 3.0732
15 6 4.9217 2.5373 3.7375
16 8 5.8435 1.8902 3.2875
17 6 5.0864 3.2794 5.0387
18 6 6.4990 3.0514 5.5806
19 6 6.6636 3.7929 6.8820
20 6 6.3989 3.3019 8.1061
21 6 6.6918 4.3295 9.0319
22 6 7.1186 5.3869 8.3182
23 6 7.5460 6.7170 8.8833
24 1 7.1125 6.9788 9.8485
25 6 7.8057 7.8544 7.8936
26 6 8.9786 7.1757 8.6040
27 1 9.6118 6.5158 8.0111
28 6 9.6936 7.9670 9.7010
29 8 7.1048 5.0541 7.0172
30 1 -0.3634 -1.0276 -0.0005
31 1 -0.3633 0.5139 0.8901
32 1 -0.3634 0.5139 -0.8899
33 1 1.8933 -0.5139 -0.8901
34 1 1.8934 -0.5139 0.8899
35 1 3.8314 -0.3876 -2.7355
36 1 2.0211 3.1673 1.0993
37 1 1.4480 1.7349 1.9871
38 1 3.7474 0.8070 1.9742
39 1 4.3205 2.2393 1.0865
40 1 3.0132 3.1115 3.4329
41 1 4.9293 4.3450 4.8717
42 1 4.3565 2.9133 5.7606
43 1 6.6566 1.9858 5.7474
44 1 7.2287 3.4178 4.8584
45 1 6.0319 2.3128 8.3372
46 1 6.5921 4.2758 10.1059
47 1 7.6679 7.6407 6.8337
48 1 7.5431 8.8646 8.2076
49 1 9.7565 7.3603 10.6044
50 1 10.6981 8.2261 9.3662
51 1 9.1355 8.8788 9.9138
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001567338001.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 18:53:13
Heat of formation + Delta-G solvation = 4.201284 kcal
Electronic energy + Delta-G solvation = -27473.331351 eV
Core-core repulsion = 23568.318804 eV
Total energy + Delta-G solvation = -3905.012547 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 334.204 amu
Computer time = 1.30 seconds
Orbital eigenvalues (eV)
-42.82429 -39.39258 -38.13959 -36.32259 -34.34196 -34.00164 -32.99842 -31.51431
-30.30899 -29.77032 -28.36509 -27.24241 -25.05570 -23.79490 -22.52167 -22.05499
-21.86315 -21.12131 -20.27883 -20.06926 -19.74723 -17.42771 -16.83653 -16.53756
-16.16091 -15.74386 -15.43989 -15.12529 -14.80978 -14.67965 -14.22339 -13.94146
-13.83299 -13.62553 -13.50523 -13.12674 -12.99785 -12.76471 -12.65258 -12.44847
-12.29303 -12.21058 -12.05601 -12.00818 -11.89529 -11.30454 -11.21503 -11.08393
-10.98039 -10.83451 -10.70186 -10.50266 -10.49252 -10.03034 -10.00560 -9.95145
-9.63463 -9.55416 -8.57880 -8.48927 -8.36011 -6.67417 -5.81030 -3.35828
1.44155 2.36365 2.61367 2.92359 3.36902 3.41977 3.43347 3.43889
3.55635 4.05055 4.34420 4.40547 4.47195 4.56822 4.78391 4.82590
4.85638 4.89838 5.03456 5.15384 5.19689 5.30266 5.30511 5.34946
5.43497 5.53310 5.55092 5.57748 5.59248 5.70425 5.81024 5.82991
5.89125 5.94113 6.00466 6.02969 6.27168 6.33281 6.34987 6.52551
6.63296 6.75872 6.82353 6.85012 7.01289 7.06396 7.25078 7.73849
7.79463 7.85884 8.47070 8.55548 9.15623 9.78358 10.33824 11.19944
Molecular weight = 334.20amu
Principal moments of inertia in cm(-1)
A = 0.019740 B = 0.001697 C = 0.001628
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1418.132232 B =16497.177611 C =17190.174549
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.162 4.162
2 C 0.136 3.864
3 N -0.578 5.578
4 C -0.264 4.264
5 H 0.063 0.937
6 C 0.011 3.989
7 N -0.885 5.885
8 Si 0.900 3.100
9 H -0.281 1.281
10 H -0.290 1.290
11 H -0.283 1.283
12 C 0.139 3.861
13 C 0.097 3.903
14 N -0.725 5.725
15 C 0.506 3.494
16 O -0.543 6.543
17 C -0.137 4.137
18 C -0.024 4.024
19 C -0.004 4.004
20 C -0.208 4.208
21 C -0.202 4.202
22 C 0.013 3.987
23 C -0.080 4.080
24 H 0.133 0.867
25 C -0.166 4.166
26 C -0.141 4.141
27 H 0.107 0.893
28 C -0.123 4.123
29 O -0.172 6.172
30 H 0.035 0.965
31 H 0.031 0.969
32 H 0.049 0.951
33 H 0.100 0.900
34 H 0.020 0.980
35 H 0.256 0.744
36 H 0.047 0.953
37 H 0.039 0.961
38 H 0.059 0.941
39 H 0.070 0.930
40 H 0.395 0.605
41 H 0.094 0.906
42 H 0.095 0.905
43 H 0.103 0.897
44 H 0.089 0.911
45 H 0.149 0.851
46 H 0.146 0.854
47 H 0.101 0.899
48 H 0.103 0.897
49 H 0.062 0.938
50 H 0.064 0.936
51 H 0.058 0.942
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 5.610 11.983 24.520 27.862
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.222 4.222
2 C 0.010 3.990
3 N -0.299 5.299
4 C -0.393 4.393
5 H 0.081 0.919
6 C -0.190 4.190
7 N -0.527 5.527
8 Si 0.729 3.271
9 H -0.207 1.207
10 H -0.216 1.216
11 H -0.209 1.209
12 C 0.012 3.988
13 C -0.028 4.028
14 N -0.376 5.376
15 C 0.291 3.709
16 O -0.421 6.421
17 C -0.177 4.177
18 C -0.062 4.062
19 C -0.054 4.054
20 C -0.228 4.228
21 C -0.222 4.222
22 C -0.037 4.037
23 C -0.098 4.098
24 H 0.151 0.849
25 C -0.203 4.203
26 C -0.160 4.160
27 H 0.125 0.875
28 C -0.180 4.180
29 O -0.069 6.069
30 H 0.054 0.946
31 H 0.051 0.949
32 H 0.068 0.932
33 H 0.118 0.882
34 H 0.039 0.961
35 H 0.066 0.934
36 H 0.066 0.934
37 H 0.057 0.943
38 H 0.077 0.923
39 H 0.088 0.912
40 H 0.228 0.772
41 H 0.112 0.888
42 H 0.114 0.886
43 H 0.121 0.879
44 H 0.108 0.892
45 H 0.166 0.834
46 H 0.164 0.836
47 H 0.120 0.880
48 H 0.121 0.879
49 H 0.081 0.919
50 H 0.083 0.917
51 H 0.077 0.923
Dipole moment (debyes) X Y Z Total
from point charges 6.436 11.557 23.790 27.221
hybrid contribution -0.511 0.300 -0.528 0.794
sum 5.925 11.857 23.262 26.773
Atomic orbital electron populations
1.22298 1.00777 0.98748 1.00368 1.20993 0.89847 0.86183 1.01937
1.43838 1.73753 1.11916 1.00386 1.19040 1.36835 0.94127 0.89319
0.91949 1.25131 0.96725 0.97858 0.99276 1.69981 1.35896 1.15864
1.30954 0.86419 0.77914 0.78174 0.84573 1.20730 1.21591 1.20897
1.21071 0.91780 0.96802 0.89176 1.22452 1.01688 0.96075 0.82577
1.46239 1.14260 1.52106 1.25029 1.20490 0.82909 0.81635 0.85867
1.90727 1.39993 1.42493 1.68848 1.21669 0.98194 1.02136 0.95742
1.19863 0.96991 0.99431 0.89895 1.22478 1.02457 0.82929 0.97512
1.21587 1.08147 1.01366 0.91651 1.21452 1.07101 0.93112 1.00491
1.21313 1.05232 0.96396 0.80769 1.20569 1.00128 0.88958 1.00113
0.84942 1.23200 1.01761 0.96664 0.98633 1.22522 0.89923 1.02276
1.01243 0.87469 1.21388 1.00311 0.99172 0.97135 1.83927 1.66495
1.29178 1.27274 0.94645 0.94947 0.93207 0.88236 0.96122 0.93373
0.93444 0.94284 0.92287 0.91163 0.77247 0.88773 0.88645 0.87898
0.89217 0.83365 0.83635 0.88024 0.87889 0.91916 0.91716 0.92258
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 19.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -3.23 10.24 37.16 0.38 -2.85 16
2 C 0.14 3.18 5.98 -4.04 -0.02 3.16 16
3 N -0.58 -14.00 2.45 -173.24 -0.42 -14.43 16
4 C -0.26 -7.06 9.49 -15.06 -0.14 -7.20 16
5 H 0.06 1.66 7.92 -52.49 -0.42 1.24 16
6 C 0.01 0.29 4.94 -17.43 -0.09 0.20 16
7 N -0.88 -25.38 11.32 55.49 0.63 -24.75 16
8 Si 0.90 21.47 29.61 -169.99 -5.03 16.43 16
9 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16
10 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16
11 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16
12 C 0.14 2.76 5.80 -4.05 -0.02 2.74 16
13 C 0.10 1.94 6.00 -4.04 -0.02 1.91 16
14 N -0.73 -10.98 5.56 -60.29 -0.33 -11.32 16
15 C 0.51 7.83 7.83 -10.99 -0.09 7.74 16
16 O -0.54 -10.93 15.98 5.56 0.09 -10.84 16
17 C -0.14 -1.48 5.68 -27.88 -0.16 -1.64 16
18 C -0.02 -0.27 5.04 -27.89 -0.14 -0.41 16
19 C 0.00 -0.04 6.57 -35.63 -0.23 -0.28 16
20 C -0.21 -2.16 10.81 -39.70 -0.43 -2.59 16
21 C -0.20 -1.98 10.81 -39.70 -0.43 -2.41 16
22 C 0.01 0.13 6.80 -35.62 -0.24 -0.11 16
23 C -0.08 -0.60 5.96 -91.77 -0.55 -1.15 16
24 H 0.13 0.76 8.14 -51.93 -0.42 0.33 16
25 C -0.17 -1.16 9.81 -26.74 -0.26 -1.43 16
26 C -0.14 -0.98 6.11 -90.63 -0.55 -1.53 16
27 H 0.11 0.85 8.14 -51.93 -0.42 0.43 16
28 C -0.12 -0.60 10.19 37.16 0.38 -0.23 16
29 O -0.17 -2.05 10.36 5.73 0.06 -1.99 16
30 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16
31 H 0.03 0.59 8.14 -51.92 -0.42 0.16 16
32 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16
33 H 0.10 2.65 5.32 -51.92 -0.28 2.37 16
34 H 0.02 0.46 8.10 -51.93 -0.42 0.04 16
35 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16
36 H 0.05 0.90 8.04 -51.93 -0.42 0.48 16
37 H 0.04 0.69 8.07 -51.92 -0.42 0.27 16
38 H 0.06 1.31 8.14 -51.93 -0.42 0.88 16
39 H 0.07 1.66 8.14 -51.93 -0.42 1.24 16
40 H 0.39 4.55 8.47 -40.82 -0.35 4.21 16
41 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16
42 H 0.10 0.84 8.14 -51.93 -0.42 0.42 16
43 H 0.10 1.16 8.10 -51.93 -0.42 0.74 16
44 H 0.09 1.11 8.10 -51.93 -0.42 0.69 16
45 H 0.15 1.28 8.06 -52.48 -0.42 0.85 16
46 H 0.15 1.10 8.06 -52.48 -0.42 0.68 16
47 H 0.10 0.83 7.97 -51.93 -0.41 0.42 16
48 H 0.10 0.55 8.05 -51.93 -0.42 0.13 16
49 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16
50 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16
51 H 0.06 0.25 7.90 -51.93 -0.41 -0.17 16
LS Contribution 424.68 15.07 6.40 6.40
Total: -1.00 -32.18 424.68 -10.25 -42.43
By element:
Atomic # 1 Polarization: 13.15 SS G_CDS: -9.01 Total: 4.14 kcal
Atomic # 6 Polarization: -3.45 SS G_CDS: -2.62 Total: -6.08 kcal
Atomic # 7 Polarization: -50.36 SS G_CDS: -0.13 Total: -50.50 kcal
Atomic # 8 Polarization: -12.98 SS G_CDS: 0.15 Total: -12.83 kcal
Atomic # 14 Polarization: 21.47 SS G_CDS: -5.03 Total: 16.43 kcal
Total LS contribution 6.40 Total: 6.40 kcal
Total: -32.18 -10.25 -42.43 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001567338001.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 46.628 kcal
(2) G-P(sol) polarization free energy of solvation -32.176 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.452 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.251 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.427 kcal
(6) G-S(sol) free energy of system = (1) + (5) 4.201 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.31 seconds