Wall clock time and date at job start Tue Mar 31 2020 18:53:12
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52999 * 1
3 3 N 1.46504 * 109.47341 * 2 1
4 4 C 1.36936 * 119.99959 * 266.22574 * 3 2 1
5 5 H 1.08000 * 119.99627 * 145.95087 * 4 3 2
6 6 C 1.38811 * 120.00350 * 325.95900 * 4 3 2
7 7 N 1.31624 * 119.99871 * 337.82446 * 6 4 3
8 8 Si 1.86801 * 120.00217 * 157.81855 * 6 4 3
9 9 H 1.48504 * 109.46725 * 60.00274 * 8 6 4
10 10 H 1.48494 * 109.47235 * 179.97438 * 8 6 4
11 11 H 1.48497 * 109.47258 * 300.00078 * 8 6 4
12 12 C 1.46496 * 119.99944 * 85.95567 * 3 2 1
13 13 C 1.52996 * 109.47215 * 89.99546 * 12 3 2
14 14 N 1.46508 * 109.46933 * 179.97438 * 13 12 3
15 15 C 1.34777 * 119.99782 * 180.02562 * 14 13 12
16 16 O 1.21279 * 120.00257 * 0.02562 * 15 14 13
17 17 C 1.50700 * 119.99728 * 179.97438 * 15 14 13
18 18 C 1.53002 * 109.47173 * 180.02562 * 17 15 14
19 19 C 1.50689 * 109.47448 * 180.02562 * 18 17 15
20 20 C 1.34516 * 125.79067 * 90.00118 * 19 18 17
21 21 C 1.41381 * 106.84380 * 180.02562 * 20 19 18
22 22 C 1.34512 * 106.83893 * 359.97438 * 21 20 19
23 23 C 1.50707 * 125.78828 * 180.02562 * 22 21 20
24 24 H 1.08998 * 115.54763 * 334.27930 * 23 22 21
25 25 C 1.52992 * 117.49919 * 188.61107 * 23 22 21
26 26 C 1.52995 * 117.49880 * 119.98792 * 23 22 21
27 27 H 1.08997 * 117.49870 * 0.02562 * 26 23 22
28 28 C 1.52999 * 117.49827 * 214.98054 * 26 23 22
29 29 O 1.34300 * 125.79424 * 269.69890 * 19 18 17
30 30 H 1.08996 * 109.47750 * 179.97438 * 1 2 3
31 31 H 1.09008 * 109.46723 * 299.99840 * 1 2 3
32 32 H 1.09002 * 109.47274 * 59.99456 * 1 2 3
33 33 H 1.09008 * 109.46723 * 240.00159 * 2 1 3
34 34 H 1.09002 * 109.47274 * 120.00544 * 2 1 3
35 35 H 0.96999 * 119.99774 * 179.97438 * 7 6 4
36 36 H 1.08994 * 109.46961 * 210.00096 * 12 3 2
37 37 H 1.09010 * 109.47007 * 329.99854 * 12 3 2
38 38 H 1.08994 * 109.47605 * 300.00156 * 13 12 3
39 39 H 1.08996 * 109.46853 * 60.00317 * 13 12 3
40 40 H 0.96996 * 119.99699 * 0.02562 * 14 13 12
41 41 H 1.08994 * 109.47308 * 300.00460 * 17 15 14
42 42 H 1.08996 * 109.46941 * 60.00493 * 17 15 14
43 43 H 1.09003 * 109.47339 * 300.01002 * 18 17 15
44 44 H 1.09002 * 109.46865 * 59.99660 * 18 17 15
45 45 H 1.08005 * 126.57548 * 359.96926 * 20 19 18
46 46 H 1.08004 * 126.57783 * 179.97438 * 21 20 19
47 47 H 1.09005 * 117.50168 * 359.97438 * 25 23 22
48 48 H 1.08998 * 117.50368 * 144.99296 * 25 23 22
49 49 H 1.09001 * 109.47133 * 60.00240 * 28 26 23
50 50 H 1.09000 * 109.47233 * 180.02562 * 28 26 23
51 51 H 1.09005 * 109.47137 * 299.99878 * 28 26 23
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 7 2.0184 1.3812 0.0000
4 6 2.3202 2.0007 -1.1833
5 1 2.1463 3.0605 -1.2978
6 6 2.8496 1.2667 -2.2358
7 7 3.4618 0.1256 -2.0000
8 14 2.6931 1.8981 -3.9869
9 1 3.3624 3.2190 -4.0984
10 1 3.3364 0.9376 -4.9189
11 1 1.2565 2.0401 -4.3354
12 6 2.1782 2.1016 1.2655
13 6 3.5904 1.8727 1.8079
14 7 3.7503 2.5936 3.0732
15 6 4.9217 2.5373 3.7375
16 8 5.8435 1.8902 3.2875
17 6 5.0864 3.2794 5.0387
18 6 6.4990 3.0514 5.5806
19 6 6.6636 3.7929 6.8820
20 6 6.3989 3.3019 8.1061
21 6 6.6918 4.3295 9.0319
22 6 7.1186 5.3869 8.3182
23 6 7.5460 6.7170 8.8833
24 1 7.1125 6.9788 9.8485
25 6 7.8057 7.8544 7.8936
26 6 8.9786 7.1757 8.6040
27 1 9.6118 6.5158 8.0111
28 6 9.6936 7.9670 9.7010
29 8 7.1048 5.0541 7.0172
30 1 -0.3634 -1.0276 -0.0005
31 1 -0.3633 0.5139 0.8901
32 1 -0.3634 0.5139 -0.8899
33 1 1.8933 -0.5139 -0.8901
34 1 1.8934 -0.5139 0.8899
35 1 3.8314 -0.3876 -2.7355
36 1 2.0211 3.1673 1.0993
37 1 1.4480 1.7349 1.9871
38 1 3.7474 0.8070 1.9742
39 1 4.3205 2.2393 1.0865
40 1 3.0132 3.1115 3.4329
41 1 4.9293 4.3450 4.8717
42 1 4.3565 2.9133 5.7606
43 1 6.6566 1.9858 5.7474
44 1 7.2287 3.4178 4.8584
45 1 6.0319 2.3128 8.3372
46 1 6.5921 4.2758 10.1059
47 1 7.6679 7.6407 6.8337
48 1 7.5431 8.8646 8.2076
49 1 9.7565 7.3603 10.6044
50 1 10.6981 8.2261 9.3662
51 1 9.1355 8.8788 9.9138
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001567338001.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 18:53:12
Heat of formation + Delta-G solvation = -13.216956 kcal
Electronic energy + Delta-G solvation = -27474.086662 eV
Core-core repulsion = 23568.318804 eV
Total energy + Delta-G solvation = -3905.767859 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 334.204 amu
Computer time = 1.10 seconds
Orbital eigenvalues (eV)
-43.61317 -40.73756 -38.69057 -38.09661 -35.82511 -35.04044 -33.80268 -33.47447
-31.77798 -30.64776 -29.41146 -28.52502 -26.31652 -25.38107 -23.87457 -22.97881
-22.70999 -21.89955 -21.66964 -21.23809 -20.79628 -18.70124 -18.29970 -17.62296
-17.17153 -16.90725 -16.77176 -16.70238 -16.00905 -15.73042 -15.54120 -15.39954
-15.07546 -14.59676 -14.45123 -14.21700 -13.97910 -13.93589 -13.77425 -13.73066
-13.39634 -13.19818 -13.14298 -13.02892 -12.82300 -12.77178 -12.63205 -12.44914
-12.38653 -12.28311 -12.10148 -11.96060 -11.70612 -11.55909 -11.46355 -11.02668
-10.99231 -10.73239 -10.52637 -10.05122 -9.12353 -8.65482 -7.84988 -5.43275
0.65687 1.46540 1.48454 1.55264 1.60245 1.65616 1.84611 2.27798
2.53133 2.87016 3.23853 3.41630 3.61760 3.78960 3.83171 3.87999
3.89649 4.02546 4.15687 4.17874 4.26864 4.34957 4.39010 4.39477
4.56302 4.57450 4.68834 4.70207 4.76032 4.88132 4.90088 4.93242
4.94098 4.95644 4.96364 5.07235 5.09691 5.13682 5.17155 5.17530
5.21115 5.24095 5.39245 5.49928 5.55054 5.61907 5.66689 5.88250
6.22923 6.44271 6.62116 7.14490 7.31978 7.84583 8.33870 9.12640
Molecular weight = 334.20amu
Principal moments of inertia in cm(-1)
A = 0.019740 B = 0.001697 C = 0.001628
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1418.132232 B =16497.177611 C =17190.174549
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.147 4.147
2 C 0.133 3.867
3 N -0.596 5.596
4 C -0.268 4.268
5 H 0.063 0.937
6 C -0.041 4.041
7 N -0.919 5.919
8 Si 0.959 3.041
9 H -0.277 1.277
10 H -0.296 1.296
11 H -0.275 1.275
12 C 0.143 3.857
13 C 0.119 3.881
14 N -0.711 5.711
15 C 0.504 3.496
16 O -0.595 6.595
17 C -0.120 4.120
18 C -0.020 4.020
19 C -0.022 4.022
20 C -0.207 4.207
21 C -0.210 4.210
22 C 0.003 3.997
23 C -0.085 4.085
24 H 0.156 0.844
25 C -0.167 4.167
26 C -0.141 4.141
27 H 0.089 0.911
28 C -0.119 4.119
29 O -0.191 6.191
30 H 0.056 0.944
31 H 0.052 0.948
32 H 0.034 0.966
33 H 0.065 0.935
34 H 0.022 0.978
35 H 0.251 0.749
36 H 0.060 0.940
37 H 0.071 0.929
38 H 0.030 0.970
39 H 0.024 0.976
40 H 0.417 0.583
41 H 0.113 0.887
42 H 0.127 0.873
43 H 0.100 0.900
44 H 0.070 0.930
45 H 0.165 0.835
46 H 0.168 0.832
47 H 0.083 0.917
48 H 0.123 0.877
49 H 0.068 0.932
50 H 0.066 0.934
51 H 0.071 0.929
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 4.085 13.735 27.056 30.616
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.207 4.207
2 C 0.007 3.993
3 N -0.317 5.317
4 C -0.398 4.398
5 H 0.081 0.919
6 C -0.239 4.239
7 N -0.563 5.563
8 Si 0.787 3.213
9 H -0.203 1.203
10 H -0.222 1.222
11 H -0.201 1.201
12 C 0.016 3.984
13 C -0.008 4.008
14 N -0.364 5.364
15 C 0.292 3.708
16 O -0.476 6.476
17 C -0.159 4.159
18 C -0.057 4.057
19 C -0.072 4.072
20 C -0.226 4.226
21 C -0.229 4.229
22 C -0.047 4.047
23 C -0.102 4.102
24 H 0.173 0.827
25 C -0.203 4.203
26 C -0.160 4.160
27 H 0.108 0.892
28 C -0.176 4.176
29 O -0.089 6.089
30 H 0.075 0.925
31 H 0.071 0.929
32 H 0.053 0.947
33 H 0.083 0.917
34 H 0.041 0.959
35 H 0.060 0.940
36 H 0.078 0.922
37 H 0.089 0.911
38 H 0.049 0.951
39 H 0.043 0.957
40 H 0.254 0.746
41 H 0.131 0.869
42 H 0.145 0.855
43 H 0.118 0.882
44 H 0.089 0.911
45 H 0.182 0.818
46 H 0.186 0.814
47 H 0.102 0.898
48 H 0.141 0.859
49 H 0.087 0.913
50 H 0.085 0.915
51 H 0.090 0.910
Dipole moment (debyes) X Y Z Total
from point charges 4.868 13.350 26.367 29.952
hybrid contribution 0.005 -0.224 -1.218 1.238
sum 4.872 13.126 25.149 28.783
Atomic orbital electron populations
1.22097 0.97682 1.00303 1.00573 1.20937 0.92237 0.85732 1.00371
1.44065 1.74080 1.12249 1.01266 1.19317 1.35656 0.94251 0.90609
0.91913 1.25834 0.97046 0.98311 1.02664 1.70134 1.37471 1.17239
1.31422 0.85473 0.77967 0.77446 0.80363 1.20266 1.22194 1.20114
1.21167 0.91974 0.97157 0.88101 1.21851 1.00645 0.94584 0.83692
1.45963 1.15326 1.51741 1.23366 1.21334 0.81832 0.80796 0.86887
1.90713 1.41702 1.44792 1.70384 1.21617 0.98700 1.02394 0.93221
1.19738 0.96867 0.99309 0.89823 1.22414 1.04001 0.83145 0.97626
1.21882 1.07219 1.02121 0.91332 1.21783 1.06822 0.92664 1.01595
1.21915 1.04832 0.97675 0.80234 1.20802 1.00582 0.87930 1.00929
0.82694 1.23238 1.01871 0.97554 0.97683 1.22548 0.89660 1.02123
1.01642 0.89248 1.21391 1.00333 0.99406 0.96491 1.83912 1.66975
1.29562 1.28470 0.92465 0.92874 0.94687 0.91687 0.95924 0.94016
0.92187 0.91115 0.95103 0.95730 0.74577 0.86913 0.85500 0.88166
0.91127 0.81762 0.81426 0.89794 0.85873 0.91307 0.91461 0.91044
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 18.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -5.59 10.24 71.98 0.74 -4.85 16
2 C 0.13 6.21 5.98 86.38 0.52 6.73 16
3 N -0.60 -28.80 2.45 -702.00 -1.72 -30.52 16
4 C -0.27 -14.45 9.49 84.03 0.80 -13.65 16
5 H 0.06 3.32 7.92 -2.91 -0.02 3.29 16
6 C -0.04 -2.30 4.94 84.86 0.42 -1.88 16
7 N -0.92 -54.47 11.32 21.65 0.25 -54.22 16
8 Si 0.96 44.80 29.61 68.60 2.03 46.83 16
9 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16
10 H -0.30 -13.95 7.11 99.48 0.71 -13.24 16
11 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16
12 C 0.14 5.48 5.80 86.38 0.50 5.98 16
13 C 0.12 4.81 6.00 86.38 0.52 5.33 16
14 N -0.71 -20.81 5.56 -463.06 -2.57 -23.38 16
15 C 0.50 15.40 7.83 87.66 0.69 16.09 16
16 O -0.59 -24.78 15.98 -3.03 -0.05 -24.83 16
17 C -0.12 -2.38 5.68 29.85 0.17 -2.21 16
18 C -0.02 -0.44 5.04 29.84 0.15 -0.29 16
19 C -0.02 -0.49 6.57 24.83 0.16 -0.32 16
20 C -0.21 -3.92 10.81 22.19 0.24 -3.68 16
21 C -0.21 -3.70 10.81 22.19 0.24 -3.46 16
22 C 0.00 0.06 6.80 24.83 0.17 0.23 16
23 C -0.08 -1.14 5.96 -11.54 -0.07 -1.21 16
24 H 0.16 1.33 8.14 -2.39 -0.02 1.31 16
25 C -0.17 -2.15 9.81 30.59 0.30 -1.85 16
26 C -0.14 -1.80 6.11 -10.80 -0.07 -1.87 16
27 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16
28 C -0.12 -0.94 10.19 71.98 0.73 -0.20 16
29 O -0.19 -4.50 10.36 -2.43 -0.03 -4.53 16
30 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16
31 H 0.05 1.78 8.14 -2.38 -0.02 1.76 16
32 H 0.03 1.41 8.14 -2.39 -0.02 1.39 16
33 H 0.07 3.55 5.32 -2.38 -0.01 3.54 16
34 H 0.02 1.01 8.10 -2.39 -0.02 0.99 16
35 H 0.25 14.48 8.31 -92.71 -0.77 13.71 16
36 H 0.06 2.16 8.04 -2.39 -0.02 2.14 16
37 H 0.07 2.29 8.07 -2.38 -0.02 2.27 16
38 H 0.03 1.41 8.14 -2.39 -0.02 1.39 16
39 H 0.02 1.20 8.14 -2.39 -0.02 1.18 16
40 H 0.42 8.49 8.47 -92.71 -0.79 7.70 16
41 H 0.11 1.90 8.14 -2.39 -0.02 1.89 16
42 H 0.13 1.81 8.14 -2.39 -0.02 1.79 16
43 H 0.10 2.27 8.10 -2.39 -0.02 2.25 16
44 H 0.07 1.83 8.10 -2.39 -0.02 1.81 16
45 H 0.16 2.46 8.06 -2.91 -0.02 2.44 16
46 H 0.17 2.08 8.06 -2.91 -0.02 2.06 16
47 H 0.08 1.38 7.97 -2.38 -0.02 1.36 16
48 H 0.12 1.05 8.05 -2.39 -0.02 1.03 16
49 H 0.07 0.47 8.14 -2.39 -0.02 0.45 16
50 H 0.07 0.50 8.14 -2.39 -0.02 0.48 16
51 H 0.07 0.40 7.90 -2.38 -0.02 0.38 16
Total: -1.00 -72.94 424.68 4.23 -68.71
By element:
Atomic # 1 Polarization: 22.96 SS G_CDS: 0.11 Total: 23.07 kcal
Atomic # 6 Polarization: -7.34 SS G_CDS: 6.20 Total: -1.14 kcal
Atomic # 7 Polarization: -104.07 SS G_CDS: -4.05 Total: -108.12 kcal
Atomic # 8 Polarization: -29.28 SS G_CDS: -0.07 Total: -29.35 kcal
Atomic # 14 Polarization: 44.80 SS G_CDS: 2.03 Total: 46.83 kcal
Total: -72.94 4.23 -68.71 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001567338001.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 55.496 kcal
(2) G-P(sol) polarization free energy of solvation -72.941 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.445 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.228 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.713 kcal
(6) G-S(sol) free energy of system = (1) + (5) -13.217 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.10 seconds