Wall clock time and date at job start Tue Mar 31 2020 18:53:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 N 1.46500 * 109.47042 * 2 1 4 4 C 1.36938 * 120.00328 * 270.33544 * 3 2 1 5 5 H 1.08003 * 119.99514 * 326.13976 * 4 3 2 6 6 C 1.38811 * 120.00418 * 146.14707 * 4 3 2 7 7 N 1.31619 * 119.99797 * 336.89510 * 6 4 3 8 8 Si 1.86792 * 120.00072 * 156.89375 * 6 4 3 9 9 H 1.48498 * 109.47235 * 359.97438 * 8 6 4 10 10 H 1.48507 * 109.47105 * 120.00262 * 8 6 4 11 11 H 1.48500 * 109.47362 * 240.00041 * 8 6 4 12 12 C 1.46503 * 119.99875 * 90.32907 * 3 2 1 13 13 C 1.53000 * 109.46849 * 90.00297 * 12 3 2 14 14 N 1.46506 * 109.47177 * 179.97438 * 13 12 3 15 15 C 1.34773 * 119.99970 * 179.97438 * 14 13 12 16 16 O 1.21285 * 120.00499 * 0.02562 * 15 14 13 17 17 C 1.50702 * 119.99750 * 180.02562 * 15 14 13 18 18 C 1.53000 * 109.46957 * 180.02562 * 17 15 14 19 19 C 1.50702 * 109.46957 * 179.97438 * 18 17 15 20 20 C 1.34519 * 125.78878 * 90.00558 * 19 18 17 21 21 C 1.41379 * 106.84167 * 179.79081 * 20 19 18 22 22 C 1.34514 * 106.83801 * 0.36806 * 21 20 19 23 23 C 1.50702 * 125.78851 * 179.88876 * 22 21 20 24 24 H 1.09004 * 115.55750 * 25.40600 * 23 22 21 25 25 C 1.52994 * 117.49895 * 171.09132 * 23 22 21 26 26 C 1.52997 * 117.50087 * 239.71773 * 23 22 21 27 27 H 1.08993 * 117.51856 * 359.97438 * 26 23 22 28 28 C 1.53001 * 117.49915 * 145.02440 * 26 23 22 29 29 O 1.34296 * 108.42415 * 359.62599 * 22 21 20 30 30 H 1.09005 * 109.47075 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47106 * 299.99519 * 1 2 3 32 32 H 1.08997 * 109.47853 * 59.99845 * 1 2 3 33 33 H 1.09002 * 109.47106 * 240.00481 * 2 1 3 34 34 H 1.08997 * 109.47853 * 120.00155 * 2 1 3 35 35 H 0.96994 * 120.00163 * 179.97438 * 7 6 4 36 36 H 1.09000 * 109.47509 * 330.00582 * 12 3 2 37 37 H 1.08998 * 109.47199 * 210.00202 * 12 3 2 38 38 H 1.09000 * 109.47574 * 59.99805 * 13 12 3 39 39 H 1.08998 * 109.47143 * 299.99940 * 13 12 3 40 40 H 0.97001 * 119.99536 * 0.02562 * 14 13 12 41 41 H 1.08994 * 109.47347 * 60.00592 * 17 15 14 42 42 H 1.08998 * 109.47240 * 300.00708 * 17 15 14 43 43 H 1.09007 * 109.47217 * 60.00125 * 18 17 15 44 44 H 1.08998 * 109.47143 * 300.00057 * 18 17 15 45 45 H 1.07997 * 126.57781 * 0.03050 * 20 19 18 46 46 H 1.08002 * 126.58060 * 180.23107 * 21 20 19 47 47 H 1.08998 * 117.50363 * 0.02562 * 25 23 22 48 48 H 1.09007 * 117.52074 * 214.97430 * 25 23 22 49 49 H 1.09000 * 109.46800 * 180.02562 * 28 26 23 50 50 H 1.08998 * 109.46866 * 300.00757 * 28 26 23 51 51 H 1.08999 * 109.47258 * 60.00785 * 28 26 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0182 1.3812 0.0000 4 6 2.2399 2.0291 -1.1859 5 1 2.5924 1.4775 -2.0449 6 6 2.0119 3.3949 -1.2839 7 7 1.1855 3.9858 -0.4471 8 14 2.8779 4.3941 -2.6033 9 1 3.7482 3.5008 -3.4094 10 1 1.8670 5.0298 -3.4862 11 1 3.7074 5.4463 -1.9629 12 6 2.2693 2.0694 1.2687 13 6 3.7167 1.8282 1.7020 14 7 3.9679 2.5168 2.9705 15 6 5.1837 2.4440 3.5475 16 8 6.0700 1.8088 3.0165 17 6 5.4420 3.1519 4.8526 18 6 6.8894 2.9108 5.2858 19 6 7.1479 3.6193 6.5906 20 6 6.9709 3.0973 7.8177 21 6 7.3361 4.0994 8.7457 22 6 7.7066 5.1766 8.0303 23 6 8.1751 6.4922 8.5967 24 1 8.6168 6.4450 9.5921 25 6 8.7477 7.5190 7.6177 26 6 7.3681 7.7422 8.2404 27 1 6.4985 7.6136 7.5960 28 6 7.2429 8.8305 9.3086 29 8 7.5937 4.8789 6.7256 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3635 0.5138 -0.8899 33 1 1.8933 -0.5138 -0.8900 34 1 1.8934 -0.5138 0.8899 35 1 1.0264 4.9401 -0.5153 36 1 1.5927 1.6838 2.0314 37 1 2.1016 3.1388 1.1414 38 1 4.3934 2.2137 0.9395 39 1 3.8844 0.7587 1.8294 40 1 3.2590 3.0246 3.3954 41 1 4.7652 2.7666 5.6151 42 1 5.2745 4.2214 4.7252 43 1 7.5661 3.2965 4.5231 44 1 7.0572 1.8414 5.4131 45 1 6.6211 2.1021 8.0494 46 1 7.3186 4.0167 9.8224 47 1 8.7852 7.2433 6.5638 48 1 9.5660 8.1477 7.9687 49 1 6.6455 9.6548 8.9191 50 1 6.7585 8.4172 10.1932 51 1 8.2353 9.1946 9.5744 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001567338002.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:53:16 Heat of formation + Delta-G solvation = 3.291021 kcal Electronic energy + Delta-G solvation = -27756.879148 eV Core-core repulsion = 23851.827129 eV Total energy + Delta-G solvation = -3905.052019 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -42.79906 -39.36441 -38.10603 -36.33425 -34.24717 -33.94912 -32.97384 -31.84418 -30.21651 -29.56786 -28.30525 -27.30422 -25.04343 -23.85711 -22.50790 -22.02156 -21.82911 -21.07408 -20.21344 -20.05073 -19.78045 -17.46013 -16.90721 -16.37555 -16.12639 -15.73085 -15.39806 -15.08850 -14.86185 -14.71726 -14.10900 -13.90946 -13.83340 -13.63942 -13.47445 -13.17178 -12.97746 -12.71503 -12.61198 -12.37791 -12.35557 -12.22334 -12.11886 -12.03196 -11.85393 -11.21833 -11.16930 -11.10017 -10.94166 -10.89807 -10.66295 -10.46934 -10.34474 -10.07628 -9.98501 -9.93690 -9.79791 -9.54478 -8.59878 -8.48619 -8.33430 -6.69750 -5.84692 -3.38192 1.46681 2.39275 2.63481 2.94070 3.33669 3.43257 3.45193 3.46787 3.59649 4.08186 4.37535 4.43913 4.46305 4.59210 4.81683 4.85574 4.89309 4.92320 5.06322 5.18486 5.22889 5.27656 5.34275 5.37645 5.46448 5.54650 5.56320 5.61315 5.62890 5.72974 5.83519 5.86720 5.91505 6.02448 6.06867 6.12836 6.17215 6.37303 6.39762 6.51642 6.53675 6.63790 6.87405 6.94601 7.03714 7.03966 7.22385 7.58027 7.78497 7.91934 8.43913 8.57180 9.12177 9.75985 10.31388 11.15783 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.013344 B = 0.002036 C = 0.001879 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2097.795207 B =13749.503465 C =14894.997245 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.141 3.859 3 N -0.581 5.581 4 C -0.255 4.255 5 H 0.064 0.936 6 C 0.008 3.992 7 N -0.888 5.888 8 Si 0.896 3.104 9 H -0.275 1.275 10 H -0.290 1.290 11 H -0.288 1.288 12 C 0.133 3.867 13 C 0.099 3.901 14 N -0.719 5.719 15 C 0.507 3.493 16 O -0.550 6.550 17 C -0.138 4.138 18 C -0.023 4.023 19 C -0.004 4.004 20 C -0.208 4.208 21 C -0.203 4.203 22 C 0.013 3.987 23 C -0.080 4.080 24 H 0.133 0.867 25 C -0.166 4.166 26 C -0.140 4.140 27 H 0.108 0.892 28 C -0.123 4.123 29 O -0.171 6.171 30 H 0.031 0.969 31 H 0.042 0.958 32 H 0.054 0.946 33 H 0.043 0.957 34 H 0.034 0.966 35 H 0.254 0.746 36 H 0.027 0.973 37 H 0.105 0.895 38 H 0.064 0.936 39 H 0.049 0.951 40 H 0.398 0.602 41 H 0.096 0.904 42 H 0.094 0.906 43 H 0.089 0.911 44 H 0.102 0.898 45 H 0.148 0.852 46 H 0.146 0.854 47 H 0.101 0.899 48 H 0.102 0.898 49 H 0.064 0.936 50 H 0.062 0.938 51 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.361 4.772 21.445 24.290 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.015 3.985 3 N -0.302 5.302 4 C -0.385 4.385 5 H 0.082 0.918 6 C -0.192 4.192 7 N -0.531 5.531 8 Si 0.725 3.275 9 H -0.200 1.200 10 H -0.217 1.217 11 H -0.214 1.214 12 C 0.005 3.995 13 C -0.027 4.027 14 N -0.370 5.370 15 C 0.293 3.707 16 O -0.428 6.428 17 C -0.178 4.178 18 C -0.061 4.061 19 C -0.054 4.054 20 C -0.227 4.227 21 C -0.222 4.222 22 C -0.037 4.037 23 C -0.098 4.098 24 H 0.150 0.850 25 C -0.203 4.203 26 C -0.158 4.158 27 H 0.126 0.874 28 C -0.180 4.180 29 O -0.068 6.068 30 H 0.050 0.950 31 H 0.061 0.939 32 H 0.074 0.926 33 H 0.062 0.938 34 H 0.052 0.948 35 H 0.064 0.936 36 H 0.046 0.954 37 H 0.123 0.877 38 H 0.083 0.917 39 H 0.067 0.933 40 H 0.231 0.769 41 H 0.114 0.886 42 H 0.113 0.887 43 H 0.107 0.893 44 H 0.121 0.879 45 H 0.166 0.834 46 H 0.164 0.836 47 H 0.120 0.880 48 H 0.121 0.879 49 H 0.083 0.917 50 H 0.081 0.919 51 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 10.982 4.647 20.775 23.954 hybrid contribution -0.081 0.671 -0.228 0.713 sum 10.901 5.318 20.547 23.860 Atomic orbital electron populations 1.22265 0.99583 0.98424 1.01897 1.20907 0.92051 0.87234 0.98355 1.43725 1.74325 1.10101 1.02004 1.19142 1.37884 0.91194 0.90287 0.91785 1.25073 0.97356 0.98533 0.98232 1.69973 1.33479 1.10187 1.39427 0.86335 0.79478 0.80237 0.81440 1.20032 1.21674 1.21434 1.21103 0.89114 1.02646 0.86623 1.22335 1.01919 0.95430 0.82975 1.46122 1.12585 1.53092 1.25157 1.20466 0.82708 0.81234 0.86303 1.90692 1.44056 1.42922 1.65170 1.21671 0.97623 1.02479 0.96057 1.19858 0.96245 0.99809 0.90172 1.22480 1.02590 0.82848 0.97477 1.21577 1.08128 1.01480 0.91558 1.21450 1.07061 0.93233 1.00465 1.21317 1.05248 0.96478 0.80630 1.20568 1.05404 0.84211 0.99620 0.84975 1.23199 0.96767 1.01168 0.99182 1.22523 0.95983 0.95888 1.01451 0.87393 1.21389 1.02133 0.97089 0.97410 1.83931 1.66261 1.29629 1.27018 0.95021 0.93859 0.92637 0.93816 0.94801 0.93627 0.95438 0.87733 0.91722 0.93305 0.76862 0.88598 0.88713 0.89252 0.87934 0.83380 0.83637 0.88041 0.87927 0.91662 0.91906 0.92300 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.18 10.24 37.15 0.38 -2.79 16 2 C 0.14 2.93 6.39 -4.05 -0.03 2.90 16 3 N -0.58 -14.01 2.45 -173.24 -0.42 -14.44 16 4 C -0.26 -6.82 9.48 -15.06 -0.14 -6.97 16 5 H 0.06 1.73 7.93 -52.48 -0.42 1.31 16 6 C 0.01 0.21 4.95 -17.43 -0.09 0.12 16 7 N -0.89 -24.55 11.31 55.49 0.63 -23.92 16 8 Si 0.90 21.41 29.61 -169.99 -5.03 16.38 16 9 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 10 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 11 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 12 C 0.13 2.93 5.41 -4.04 -0.02 2.90 16 13 C 0.10 1.99 6.00 -4.04 -0.02 1.97 16 14 N -0.72 -11.74 5.56 -60.29 -0.33 -12.07 16 15 C 0.51 8.08 7.83 -10.99 -0.09 7.99 16 16 O -0.55 -10.86 15.98 5.55 0.09 -10.77 16 17 C -0.14 -1.59 5.68 -27.88 -0.16 -1.75 16 18 C -0.02 -0.27 5.04 -27.88 -0.14 -0.41 16 19 C 0.00 -0.05 6.58 -35.62 -0.23 -0.28 16 20 C -0.21 -2.22 10.81 -39.70 -0.43 -2.65 16 21 C -0.20 -2.06 10.81 -39.70 -0.43 -2.49 16 22 C 0.01 0.14 6.80 -35.62 -0.24 -0.10 16 23 C -0.08 -0.64 5.96 -91.78 -0.55 -1.19 16 24 H 0.13 0.81 8.14 -51.93 -0.42 0.38 16 25 C -0.17 -1.25 9.81 -26.73 -0.26 -1.51 16 26 C -0.14 -1.04 6.11 -90.62 -0.55 -1.59 16 27 H 0.11 0.92 8.14 -51.93 -0.42 0.50 16 28 C -0.12 -0.67 10.19 37.16 0.38 -0.29 16 29 O -0.17 -2.13 10.36 5.72 0.06 -2.07 16 30 H 0.03 0.52 8.14 -51.93 -0.42 0.09 16 31 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16 32 H 0.05 1.20 8.14 -51.93 -0.42 0.78 16 33 H 0.04 0.89 8.04 -51.93 -0.42 0.48 16 34 H 0.03 0.64 8.07 -51.93 -0.42 0.22 16 35 H 0.25 6.79 8.31 -40.82 -0.34 6.45 16 36 H 0.03 0.57 8.07 -51.93 -0.42 0.15 16 37 H 0.11 2.60 5.31 -51.93 -0.28 2.32 16 38 H 0.06 1.49 8.14 -51.93 -0.42 1.07 16 39 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 40 H 0.40 5.47 8.47 -40.82 -0.35 5.12 16 41 H 0.10 0.91 8.14 -51.93 -0.42 0.49 16 42 H 0.09 1.02 8.14 -51.93 -0.42 0.59 16 43 H 0.09 1.12 8.10 -51.93 -0.42 0.70 16 44 H 0.10 1.15 8.10 -51.93 -0.42 0.73 16 45 H 0.15 1.31 8.06 -52.49 -0.42 0.88 16 46 H 0.15 1.15 8.06 -52.49 -0.42 0.73 16 47 H 0.10 0.89 7.96 -51.93 -0.41 0.48 16 48 H 0.10 0.59 8.05 -51.92 -0.42 0.18 16 49 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 50 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 51 H 0.06 0.27 7.90 -51.93 -0.41 -0.14 16 LS Contribution 424.66 15.07 6.40 6.40 Total: -1.00 -31.29 424.66 -10.25 -41.54 By element: Atomic # 1 Polarization: 14.11 SS G_CDS: -9.01 Total: 5.11 kcal Atomic # 6 Polarization: -3.52 SS G_CDS: -2.62 Total: -6.15 kcal Atomic # 7 Polarization: -50.30 SS G_CDS: -0.13 Total: -50.43 kcal Atomic # 8 Polarization: -12.99 SS G_CDS: 0.15 Total: -12.84 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.03 Total: 16.38 kcal Total LS contribution 6.40 Total: 6.40 kcal Total: -31.29 -10.25 -41.54 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567338002.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.828 kcal (2) G-P(sol) polarization free energy of solvation -31.287 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.541 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.250 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.537 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.291 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds