Wall clock time and date at job start Tue Mar 31 2020 18:53:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 N 1.46500 * 109.47042 * 2 1 4 4 C 1.36938 * 120.00328 * 270.33544 * 3 2 1 5 5 H 1.08003 * 119.99514 * 326.13976 * 4 3 2 6 6 C 1.38811 * 120.00418 * 146.14707 * 4 3 2 7 7 N 1.31619 * 119.99797 * 336.89510 * 6 4 3 8 8 Si 1.86792 * 120.00072 * 156.89375 * 6 4 3 9 9 H 1.48498 * 109.47235 * 359.97438 * 8 6 4 10 10 H 1.48507 * 109.47105 * 120.00262 * 8 6 4 11 11 H 1.48500 * 109.47362 * 240.00041 * 8 6 4 12 12 C 1.46503 * 119.99875 * 90.32907 * 3 2 1 13 13 C 1.53000 * 109.46849 * 90.00297 * 12 3 2 14 14 N 1.46506 * 109.47177 * 179.97438 * 13 12 3 15 15 C 1.34773 * 119.99970 * 179.97438 * 14 13 12 16 16 O 1.21285 * 120.00499 * 0.02562 * 15 14 13 17 17 C 1.50702 * 119.99750 * 180.02562 * 15 14 13 18 18 C 1.53000 * 109.46957 * 180.02562 * 17 15 14 19 19 C 1.50702 * 109.46957 * 179.97438 * 18 17 15 20 20 C 1.34519 * 125.78878 * 90.00558 * 19 18 17 21 21 C 1.41379 * 106.84167 * 179.79081 * 20 19 18 22 22 C 1.34514 * 106.83801 * 0.36806 * 21 20 19 23 23 C 1.50702 * 125.78851 * 179.88876 * 22 21 20 24 24 H 1.09004 * 115.55750 * 25.40600 * 23 22 21 25 25 C 1.52994 * 117.49895 * 171.09132 * 23 22 21 26 26 C 1.52997 * 117.50087 * 239.71773 * 23 22 21 27 27 H 1.08993 * 117.51856 * 359.97438 * 26 23 22 28 28 C 1.53001 * 117.49915 * 145.02440 * 26 23 22 29 29 O 1.34296 * 108.42415 * 359.62599 * 22 21 20 30 30 H 1.09005 * 109.47075 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47106 * 299.99519 * 1 2 3 32 32 H 1.08997 * 109.47853 * 59.99845 * 1 2 3 33 33 H 1.09002 * 109.47106 * 240.00481 * 2 1 3 34 34 H 1.08997 * 109.47853 * 120.00155 * 2 1 3 35 35 H 0.96994 * 120.00163 * 179.97438 * 7 6 4 36 36 H 1.09000 * 109.47509 * 330.00582 * 12 3 2 37 37 H 1.08998 * 109.47199 * 210.00202 * 12 3 2 38 38 H 1.09000 * 109.47574 * 59.99805 * 13 12 3 39 39 H 1.08998 * 109.47143 * 299.99940 * 13 12 3 40 40 H 0.97001 * 119.99536 * 0.02562 * 14 13 12 41 41 H 1.08994 * 109.47347 * 60.00592 * 17 15 14 42 42 H 1.08998 * 109.47240 * 300.00708 * 17 15 14 43 43 H 1.09007 * 109.47217 * 60.00125 * 18 17 15 44 44 H 1.08998 * 109.47143 * 300.00057 * 18 17 15 45 45 H 1.07997 * 126.57781 * 0.03050 * 20 19 18 46 46 H 1.08002 * 126.58060 * 180.23107 * 21 20 19 47 47 H 1.08998 * 117.50363 * 0.02562 * 25 23 22 48 48 H 1.09007 * 117.52074 * 214.97430 * 25 23 22 49 49 H 1.09000 * 109.46800 * 180.02562 * 28 26 23 50 50 H 1.08998 * 109.46866 * 300.00757 * 28 26 23 51 51 H 1.08999 * 109.47258 * 60.00785 * 28 26 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0182 1.3812 0.0000 4 6 2.2399 2.0291 -1.1859 5 1 2.5924 1.4775 -2.0449 6 6 2.0119 3.3949 -1.2839 7 7 1.1855 3.9858 -0.4471 8 14 2.8779 4.3941 -2.6033 9 1 3.7482 3.5008 -3.4094 10 1 1.8670 5.0298 -3.4862 11 1 3.7074 5.4463 -1.9629 12 6 2.2693 2.0694 1.2687 13 6 3.7167 1.8282 1.7020 14 7 3.9679 2.5168 2.9705 15 6 5.1837 2.4440 3.5475 16 8 6.0700 1.8088 3.0165 17 6 5.4420 3.1519 4.8526 18 6 6.8894 2.9108 5.2858 19 6 7.1479 3.6193 6.5906 20 6 6.9709 3.0973 7.8177 21 6 7.3361 4.0994 8.7457 22 6 7.7066 5.1766 8.0303 23 6 8.1751 6.4922 8.5967 24 1 8.6168 6.4450 9.5921 25 6 8.7477 7.5190 7.6177 26 6 7.3681 7.7422 8.2404 27 1 6.4985 7.6136 7.5960 28 6 7.2429 8.8305 9.3086 29 8 7.5937 4.8789 6.7256 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3635 0.5138 -0.8899 33 1 1.8933 -0.5138 -0.8900 34 1 1.8934 -0.5138 0.8899 35 1 1.0264 4.9401 -0.5153 36 1 1.5927 1.6838 2.0314 37 1 2.1016 3.1388 1.1414 38 1 4.3934 2.2137 0.9395 39 1 3.8844 0.7587 1.8294 40 1 3.2590 3.0246 3.3954 41 1 4.7652 2.7666 5.6151 42 1 5.2745 4.2214 4.7252 43 1 7.5661 3.2965 4.5231 44 1 7.0572 1.8414 5.4131 45 1 6.6211 2.1021 8.0494 46 1 7.3186 4.0167 9.8224 47 1 8.7852 7.2433 6.5638 48 1 9.5660 8.1477 7.9687 49 1 6.6455 9.6548 8.9191 50 1 6.7585 8.4172 10.1932 51 1 8.2353 9.1946 9.5744 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001567338002.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:53:15 Heat of formation + Delta-G solvation = -12.744367 kcal Electronic energy + Delta-G solvation = -27757.574494 eV Core-core repulsion = 23851.827129 eV Total energy + Delta-G solvation = -3905.747366 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -43.61573 -40.72927 -38.69508 -38.10882 -35.67869 -35.03692 -33.80424 -33.78498 -31.56988 -30.58715 -29.44101 -28.57220 -26.32519 -25.44190 -23.83123 -22.97565 -22.71175 -21.84636 -21.67191 -21.25782 -20.80991 -18.83796 -18.19545 -17.55045 -17.16965 -17.01918 -16.77449 -16.66381 -16.02273 -15.74555 -15.48897 -15.37598 -15.05854 -14.67215 -14.46675 -14.18975 -14.02705 -13.94647 -13.86022 -13.73983 -13.34594 -13.17519 -13.10247 -13.03006 -12.88404 -12.78819 -12.63173 -12.42627 -12.38782 -12.23309 -12.10948 -11.97323 -11.72686 -11.55910 -11.52330 -11.03013 -10.98521 -10.73298 -10.57724 -10.02704 -9.12666 -8.65657 -7.86809 -5.43209 0.65282 1.41475 1.46847 1.55440 1.60503 1.64679 1.84196 2.28279 2.51354 2.86546 3.21454 3.41203 3.61377 3.78825 3.82746 3.87890 3.89607 4.02177 4.14738 4.16617 4.33414 4.37364 4.39165 4.45110 4.46451 4.56897 4.68133 4.75033 4.78121 4.82976 4.87091 4.89190 4.89953 4.93875 4.95752 5.05397 5.06601 5.13155 5.17559 5.21577 5.25105 5.29739 5.39209 5.44187 5.57582 5.61907 5.65968 5.80570 6.22714 6.42880 6.61317 7.13017 7.27787 7.83343 8.32832 9.10050 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.013344 B = 0.002036 C = 0.001879 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2097.795207 B =13749.503465 C =14894.997245 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.134 3.866 3 N -0.598 5.598 4 C -0.265 4.265 5 H 0.055 0.945 6 C -0.034 4.034 7 N -0.909 5.909 8 Si 0.948 3.052 9 H -0.273 1.273 10 H -0.288 1.288 11 H -0.291 1.291 12 C 0.140 3.860 13 C 0.120 3.880 14 N -0.714 5.714 15 C 0.507 3.493 16 O -0.590 6.590 17 C -0.123 4.123 18 C -0.017 4.017 19 C -0.024 4.024 20 C -0.206 4.206 21 C -0.210 4.210 22 C 0.002 3.998 23 C -0.085 4.085 24 H 0.155 0.845 25 C -0.169 4.169 26 C -0.139 4.139 27 H 0.091 0.909 28 C -0.120 4.120 29 O -0.192 6.192 30 H 0.067 0.933 31 H 0.036 0.964 32 H 0.027 0.973 33 H 0.043 0.957 34 H 0.056 0.944 35 H 0.252 0.748 36 H 0.044 0.956 37 H 0.080 0.920 38 H 0.029 0.971 39 H 0.046 0.954 40 H 0.413 0.587 41 H 0.125 0.875 42 H 0.105 0.895 43 H 0.071 0.929 44 H 0.105 0.895 45 H 0.166 0.834 46 H 0.169 0.831 47 H 0.082 0.918 48 H 0.123 0.877 49 H 0.066 0.934 50 H 0.069 0.931 51 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.508 4.847 23.729 26.400 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.009 3.991 3 N -0.319 5.319 4 C -0.395 4.395 5 H 0.073 0.927 6 C -0.231 4.231 7 N -0.553 5.553 8 Si 0.777 3.223 9 H -0.198 1.198 10 H -0.215 1.215 11 H -0.218 1.218 12 C 0.013 3.987 13 C -0.007 4.007 14 N -0.365 5.365 15 C 0.295 3.705 16 O -0.471 6.471 17 C -0.163 4.163 18 C -0.055 4.055 19 C -0.073 4.073 20 C -0.225 4.225 21 C -0.229 4.229 22 C -0.048 4.048 23 C -0.102 4.102 24 H 0.173 0.827 25 C -0.206 4.206 26 C -0.157 4.157 27 H 0.109 0.891 28 C -0.176 4.176 29 O -0.090 6.090 30 H 0.086 0.914 31 H 0.055 0.945 32 H 0.046 0.954 33 H 0.062 0.938 34 H 0.074 0.926 35 H 0.062 0.938 36 H 0.062 0.938 37 H 0.098 0.902 38 H 0.047 0.953 39 H 0.065 0.935 40 H 0.249 0.751 41 H 0.143 0.857 42 H 0.124 0.876 43 H 0.090 0.910 44 H 0.123 0.877 45 H 0.184 0.816 46 H 0.186 0.814 47 H 0.101 0.899 48 H 0.141 0.859 49 H 0.085 0.915 50 H 0.088 0.912 51 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 11.111 4.720 23.082 26.048 hybrid contribution -0.111 0.597 -0.909 1.093 sum 11.001 5.317 22.173 25.316 Atomic orbital electron populations 1.22113 0.98465 1.00223 1.00152 1.21066 0.92891 0.85685 0.99426 1.43961 1.74900 1.11217 1.01852 1.19284 1.37476 0.91670 0.91073 0.92703 1.25624 0.98075 0.99279 1.00147 1.70064 1.34433 1.10130 1.40722 0.85514 0.78436 0.78819 0.79531 1.19819 1.21516 1.21763 1.20968 0.90319 1.01037 0.86410 1.21805 0.99786 0.95311 0.83792 1.45984 1.13568 1.53020 1.23955 1.21202 0.81624 0.80443 0.87216 1.90676 1.45183 1.44750 1.66531 1.21626 0.98282 1.02483 0.93898 1.19742 0.95828 0.99938 0.89982 1.22462 1.04137 0.83039 0.97688 1.21885 1.07115 1.02267 0.91186 1.21792 1.06693 0.92800 1.01608 1.21922 1.04969 0.97774 0.80112 1.20799 1.05756 0.83228 1.00458 0.82726 1.23237 0.97660 1.01448 0.98228 1.22543 0.95219 0.96247 1.01702 0.89095 1.21394 1.03019 0.96377 0.96860 1.83915 1.66776 1.30102 1.28234 0.91408 0.94466 0.95388 0.93827 0.92601 0.93831 0.93810 0.90226 0.95282 0.93534 0.75132 0.85664 0.87628 0.91010 0.87681 0.81613 0.81386 0.89936 0.85916 0.91484 0.91234 0.91088 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.67 10.24 71.98 0.74 -4.94 16 2 C 0.13 5.45 6.39 86.38 0.55 6.01 16 3 N -0.60 -28.89 2.45 -702.01 -1.72 -30.61 16 4 C -0.26 -14.31 9.48 84.03 0.80 -13.51 16 5 H 0.06 3.01 7.93 -2.91 -0.02 2.98 16 6 C -0.03 -1.84 4.95 84.86 0.42 -1.42 16 7 N -0.91 -50.85 11.31 21.65 0.24 -50.61 16 8 Si 0.95 44.59 29.61 68.60 2.03 46.63 16 9 H -0.27 -12.63 7.11 99.48 0.71 -11.93 16 10 H -0.29 -13.41 7.11 99.48 0.71 -12.70 16 11 H -0.29 -13.72 7.11 99.48 0.71 -13.02 16 12 C 0.14 6.16 5.41 86.38 0.47 6.62 16 13 C 0.12 4.85 6.00 86.38 0.52 5.37 16 14 N -0.71 -22.87 5.56 -463.05 -2.57 -25.44 16 15 C 0.51 15.89 7.83 87.66 0.69 16.57 16 16 O -0.59 -23.55 15.98 -3.04 -0.05 -23.59 16 17 C -0.12 -2.66 5.68 29.85 0.17 -2.49 16 18 C -0.02 -0.39 5.04 29.85 0.15 -0.24 16 19 C -0.02 -0.54 6.58 24.83 0.16 -0.37 16 20 C -0.21 -4.02 10.81 22.19 0.24 -3.78 16 21 C -0.21 -3.87 10.81 22.19 0.24 -3.63 16 22 C 0.00 0.04 6.80 24.83 0.17 0.21 16 23 C -0.08 -1.23 5.96 -11.54 -0.07 -1.30 16 24 H 0.16 1.48 8.14 -2.38 -0.02 1.46 16 25 C -0.17 -2.39 9.81 30.59 0.30 -2.09 16 26 C -0.14 -1.91 6.11 -10.79 -0.07 -1.97 16 27 H 0.09 1.54 8.14 -2.39 -0.02 1.53 16 28 C -0.12 -1.06 10.19 71.98 0.73 -0.33 16 29 O -0.19 -4.74 10.36 -2.43 -0.03 -4.76 16 30 H 0.07 2.05 8.14 -2.38 -0.02 2.03 16 31 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 32 H 0.03 1.18 8.14 -2.39 -0.02 1.16 16 33 H 0.04 1.75 8.04 -2.39 -0.02 1.73 16 34 H 0.06 2.01 8.07 -2.39 -0.02 1.99 16 35 H 0.25 13.64 8.31 -92.71 -0.77 12.87 16 36 H 0.04 1.76 8.07 -2.39 -0.02 1.74 16 37 H 0.08 4.00 5.31 -2.39 -0.01 3.99 16 38 H 0.03 1.37 8.14 -2.39 -0.02 1.35 16 39 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 40 H 0.41 10.83 8.47 -92.71 -0.79 10.05 16 41 H 0.13 2.03 8.14 -2.39 -0.02 2.01 16 42 H 0.11 2.12 8.14 -2.39 -0.02 2.10 16 43 H 0.07 1.86 8.10 -2.38 -0.02 1.84 16 44 H 0.10 2.30 8.10 -2.39 -0.02 2.28 16 45 H 0.17 2.52 8.06 -2.91 -0.02 2.50 16 46 H 0.17 2.20 8.06 -2.91 -0.02 2.17 16 47 H 0.08 1.48 7.96 -2.39 -0.02 1.46 16 48 H 0.12 1.19 8.05 -2.38 -0.02 1.17 16 49 H 0.07 0.58 8.14 -2.39 -0.02 0.56 16 50 H 0.07 0.54 8.14 -2.39 -0.02 0.52 16 51 H 0.07 0.47 7.90 -2.39 -0.02 0.45 16 Total: -1.00 -68.33 424.66 4.23 -64.10 By element: Atomic # 1 Polarization: 25.46 SS G_CDS: 0.11 Total: 25.58 kcal Atomic # 6 Polarization: -7.49 SS G_CDS: 6.21 Total: -1.29 kcal Atomic # 7 Polarization: -102.61 SS G_CDS: -4.05 Total: -106.66 kcal Atomic # 8 Polarization: -28.28 SS G_CDS: -0.07 Total: -28.36 kcal Atomic # 14 Polarization: 44.59 SS G_CDS: 2.03 Total: 46.63 kcal Total: -68.33 4.23 -64.10 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567338002.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.351 kcal (2) G-P(sol) polarization free energy of solvation -68.325 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.975 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.230 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.095 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.744 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds