Wall clock time and date at job start Tue Mar 31 2020 19:25:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.42893 * 109.47193 * 2 1 4 4 C 1.35910 * 117.00244 * 180.02562 * 3 2 1 5 5 C 1.38859 * 119.98258 * 0.02562 * 4 3 2 6 6 C 1.38244 * 120.24015 * 179.97438 * 5 4 3 7 7 C 1.38004 * 120.20627 * 359.74272 * 6 5 4 8 8 C 1.39566 * 119.96255 * 0.51071 * 7 6 5 9 9 C 1.47868 * 120.11782 * 179.76575 * 8 7 6 10 10 O 1.21543 * 120.00076 * 179.72225 * 9 8 7 11 11 N 1.34781 * 119.99398 * 359.72504 * 9 8 7 12 12 C 1.46505 * 119.99279 * 179.97438 * 11 9 8 13 13 C 1.53002 * 109.46716 * 180.02562 * 12 11 9 14 14 C 1.53000 * 109.47025 * 180.02562 * 13 12 11 15 15 N 1.46500 * 109.46780 * 180.02562 * 14 13 12 16 16 C 1.36937 * 119.99959 * 90.00660 * 15 14 13 17 17 H 1.08008 * 119.99395 * 217.14030 * 16 15 14 18 18 C 1.38808 * 120.00640 * 37.13618 * 16 15 14 19 19 N 1.31620 * 119.99559 * 21.27256 * 18 16 15 20 20 Si 1.86802 * 120.00355 * 201.27061 * 18 16 15 21 21 H 1.48500 * 109.47203 * 59.99521 * 20 18 16 22 22 H 1.48497 * 109.47379 * 180.02562 * 20 18 16 23 23 H 1.48504 * 109.46776 * 299.99966 * 20 18 16 24 24 C 1.46502 * 119.99902 * 269.99337 * 15 14 13 25 25 C 1.53005 * 109.46758 * 114.91022 * 24 15 14 26 26 C 1.53006 * 109.47302 * 234.90784 * 24 15 14 27 27 C 1.38452 * 119.98849 * 179.97438 * 4 3 2 28 28 H 1.08999 * 109.46813 * 59.99664 * 1 2 3 29 29 H 1.08992 * 109.47194 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47129 * 300.00459 * 1 2 3 31 31 H 1.09002 * 109.46863 * 240.00011 * 2 1 3 32 32 H 1.08999 * 109.46813 * 120.00336 * 2 1 3 33 33 H 1.08009 * 119.87914 * 359.95960 * 5 4 3 34 34 H 1.07995 * 119.89542 * 180.02562 * 6 5 4 35 35 H 1.07992 * 120.02205 * 180.25579 * 7 6 5 36 36 H 0.96996 * 120.00446 * 0.02562 * 11 9 8 37 37 H 1.08997 * 109.47200 * 60.00692 * 12 11 9 38 38 H 1.08998 * 109.47260 * 300.00148 * 12 11 9 39 39 H 1.08998 * 109.47350 * 300.00059 * 13 12 11 40 40 H 1.08996 * 109.47033 * 59.99924 * 13 12 11 41 41 H 1.08999 * 109.46598 * 299.99697 * 14 13 12 42 42 H 1.08996 * 109.47439 * 59.99974 * 14 13 12 43 43 H 0.97004 * 119.99776 * 180.02562 * 19 18 16 44 44 H 1.08997 * 109.46987 * 354.90447 * 24 15 14 45 45 H 1.08996 * 109.47018 * 63.31160 * 25 24 15 46 46 H 1.08995 * 109.46605 * 183.31305 * 25 24 15 47 47 H 1.09002 * 109.46612 * 303.30730 * 25 24 15 48 48 H 1.08995 * 109.46954 * 61.61817 * 26 24 15 49 49 H 1.08994 * 109.46892 * 181.62114 * 26 24 15 50 50 H 1.09001 * 109.46623 * 301.62125 * 26 24 15 51 51 H 1.07994 * 120.10227 * 0.04259 * 27 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.3538 1.5253 -0.0005 5 6 4.1993 0.4239 -0.0016 6 6 5.5706 0.5989 -0.0027 7 6 6.1084 1.8698 -0.0081 8 6 5.2665 2.9829 -0.0017 9 6 5.8390 4.3463 -0.0022 10 8 5.1038 5.3142 -0.0017 11 7 7.1761 4.5156 -0.0033 12 6 7.7434 5.8663 -0.0044 13 6 9.2708 5.7780 -0.0061 14 6 9.8633 7.1886 -0.0066 15 7 11.3258 7.1039 -0.0088 16 6 12.0075 7.0649 -1.1958 17 1 12.8890 6.4481 -1.2922 18 6 11.5658 7.8177 -2.2751 19 7 10.7857 8.8589 -2.0759 20 14 12.0786 7.3532 -4.0103 21 1 11.6068 5.9784 -4.3147 22 1 11.4787 8.3083 -4.9762 23 1 13.5588 7.4039 -4.1193 24 6 12.0590 7.0614 1.2588 25 6 12.7635 5.7100 1.3953 26 6 13.0989 8.1835 1.2845 27 6 3.8826 2.8048 -0.0011 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8899 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 3.7841 -0.5732 -0.0013 34 1 6.2231 -0.2617 -0.0039 35 1 7.1800 2.0031 -0.0131 36 1 7.7628 3.7431 -0.0041 37 1 7.4110 6.4007 0.8856 38 1 7.4096 6.3999 -0.8943 39 1 9.6049 5.2443 0.8837 40 1 9.6028 5.2437 -0.8962 41 1 9.5292 7.7226 -0.8962 42 1 9.5312 7.7225 0.8838 43 1 10.4767 9.3848 -2.8302 44 1 11.3619 7.1931 2.0863 45 1 13.5025 5.6037 0.6012 46 1 13.2604 5.6556 2.3638 47 1 12.0292 4.9082 1.3180 48 1 12.5949 9.1475 1.2161 49 1 13.6638 8.1340 2.2153 50 1 13.7787 8.0682 0.4402 51 1 3.2261 3.6623 -0.0004 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001567649151.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:25:19 Heat of formation + Delta-G solvation = -60.290359 kcal Electronic energy + Delta-G solvation = -28092.744054 eV Core-core repulsion = 24184.934939 eV Total energy + Delta-G solvation = -3907.809115 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.52834 -40.50781 -38.54469 -38.18194 -36.44518 -34.28356 -33.40603 -32.89047 -32.11345 -30.77702 -30.13154 -27.71033 -27.24456 -25.73196 -24.70051 -23.46793 -23.32017 -22.38635 -21.34973 -21.22158 -19.64015 -18.20324 -17.67929 -17.28226 -17.09587 -16.97848 -16.94081 -16.56836 -16.35689 -15.91505 -15.66677 -15.01986 -14.92920 -14.74415 -14.54590 -14.38939 -14.26709 -14.02501 -13.39924 -13.34036 -13.24907 -13.15479 -13.06721 -12.93152 -12.81897 -12.68335 -12.61135 -12.49125 -12.36161 -12.14108 -11.94537 -11.87503 -11.68692 -11.67415 -11.30772 -11.25470 -11.08547 -10.43937 -10.30266 -10.00668 -9.31429 -8.46911 -7.74235 -5.35528 -0.26990 0.35221 1.46981 1.50018 1.55187 1.76276 1.91725 2.34389 2.55099 2.78643 3.31603 3.58737 3.63549 3.75667 4.00546 4.06728 4.09848 4.12121 4.18583 4.26915 4.34728 4.37819 4.38374 4.47932 4.53595 4.65535 4.74882 4.78321 4.83000 4.90447 4.93921 4.95999 5.00061 5.11198 5.14371 5.17900 5.22913 5.23111 5.25281 5.27604 5.32317 5.38274 5.50863 5.62447 5.65414 5.70730 5.77569 5.92461 6.38677 6.47389 6.55512 7.10949 7.25943 7.97167 8.49113 9.20794 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.016927 B = 0.002055 C = 0.001985 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1653.764102 B =13623.970456 C =14100.232207 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.043 3.957 3 O -0.337 6.337 4 C 0.114 3.886 5 C -0.176 4.176 6 C -0.077 4.077 7 C -0.121 4.121 8 C -0.108 4.108 9 C 0.550 3.450 10 O -0.584 6.584 11 N -0.705 5.705 12 C 0.132 3.868 13 C -0.121 4.121 14 C 0.148 3.852 15 N -0.592 5.592 16 C -0.243 4.243 17 H 0.057 0.943 18 C -0.039 4.039 19 N -0.918 5.918 20 Si 0.946 3.054 21 H -0.279 1.279 22 H -0.300 1.300 23 H -0.277 1.277 24 C 0.151 3.849 25 C -0.141 4.141 26 C -0.137 4.137 27 C -0.121 4.121 28 H 0.058 0.942 29 H 0.103 0.897 30 H 0.059 0.941 31 H 0.077 0.923 32 H 0.079 0.921 33 H 0.164 0.836 34 H 0.171 0.829 35 H 0.151 0.849 36 H 0.414 0.586 37 H 0.061 0.939 38 H 0.045 0.955 39 H 0.071 0.929 40 H 0.054 0.946 41 H 0.061 0.939 42 H 0.025 0.975 43 H 0.247 0.753 44 H 0.057 0.943 45 H 0.036 0.964 46 H 0.065 0.935 47 H 0.049 0.951 48 H 0.022 0.978 49 H 0.065 0.935 50 H 0.036 0.964 51 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.033 -23.528 7.161 27.834 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.031 4.031 3 O -0.252 6.252 4 C 0.069 3.931 5 C -0.195 4.195 6 C -0.095 4.095 7 C -0.140 4.140 8 C -0.111 4.111 9 C 0.338 3.662 10 O -0.466 6.466 11 N -0.357 5.357 12 C 0.008 3.992 13 C -0.161 4.161 14 C 0.021 3.979 15 N -0.313 5.313 16 C -0.374 4.374 17 H 0.074 0.926 18 C -0.236 4.236 19 N -0.563 5.563 20 Si 0.776 3.224 21 H -0.205 1.205 22 H -0.227 1.227 23 H -0.203 1.203 24 C 0.045 3.955 25 C -0.200 4.200 26 C -0.196 4.196 27 C -0.141 4.141 28 H 0.078 0.922 29 H 0.122 0.878 30 H 0.079 0.921 31 H 0.095 0.905 32 H 0.097 0.903 33 H 0.181 0.819 34 H 0.188 0.812 35 H 0.169 0.831 36 H 0.253 0.747 37 H 0.080 0.920 38 H 0.063 0.937 39 H 0.089 0.911 40 H 0.073 0.927 41 H 0.079 0.921 42 H 0.044 0.956 43 H 0.056 0.944 44 H 0.075 0.925 45 H 0.056 0.944 46 H 0.084 0.916 47 H 0.068 0.932 48 H 0.042 0.958 49 H 0.084 0.916 50 H 0.055 0.945 51 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -13.721 -22.556 7.066 27.330 hybrid contribution 0.363 0.281 -1.255 1.336 sum -13.359 -22.275 5.811 26.616 Atomic orbital electron populations 1.21828 0.91878 1.04266 1.02962 1.23148 0.96747 0.80357 1.02834 1.86093 1.18500 1.31955 1.88647 1.18874 0.83327 0.93566 0.97354 1.21819 0.94475 0.98736 1.04479 1.21339 0.94663 0.97576 0.95926 1.21538 1.00486 0.91712 1.00275 1.19590 0.93576 0.92521 1.05418 1.18707 0.82492 0.89195 0.75815 1.90746 1.60670 1.43181 1.51994 1.45873 1.06090 1.10023 1.73693 1.21208 0.94107 0.82950 1.00967 1.22132 0.91225 1.00895 1.01830 1.20712 0.83645 0.93254 1.00242 1.44068 1.00761 1.85298 1.01168 1.19007 1.10221 1.18962 0.89196 0.92568 1.25761 1.00959 0.95040 1.01858 1.70115 1.39337 1.16619 1.30206 0.85670 0.78002 0.77370 0.81397 1.20464 1.22713 1.20303 1.20684 0.93047 0.93917 0.87882 1.22043 1.00018 0.97508 1.00472 1.21952 0.99132 0.98326 1.00177 1.20416 0.94200 0.96052 1.03457 0.92248 0.87800 0.92145 0.90475 0.90328 0.81895 0.81166 0.83138 0.74733 0.92022 0.93697 0.91073 0.92678 0.92089 0.95609 0.94377 0.92470 0.94447 0.91590 0.93233 0.95824 0.91620 0.94498 0.86390 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.30 10.28 71.98 0.74 -0.56 16 2 C 0.04 0.47 5.46 71.98 0.39 0.86 16 3 O -0.34 -6.82 10.13 -92.54 -0.94 -7.76 16 4 C 0.11 2.40 6.68 22.47 0.15 2.55 16 5 C -0.18 -2.49 9.03 22.42 0.20 -2.29 16 6 C -0.08 -0.99 10.03 22.22 0.22 -0.77 16 7 C -0.12 -2.13 9.54 22.53 0.21 -1.92 16 8 C -0.11 -2.78 5.87 -20.10 -0.12 -2.89 16 9 C 0.55 17.74 7.77 86.79 0.67 18.42 16 10 O -0.58 -24.07 16.35 -3.85 -0.06 -24.13 16 11 N -0.70 -20.12 5.51 -465.94 -2.57 -22.68 16 12 C 0.13 4.51 5.67 86.38 0.49 5.00 16 13 C -0.12 -4.29 5.65 30.60 0.17 -4.11 16 14 C 0.15 6.65 5.28 86.38 0.46 7.11 16 15 N -0.59 -27.54 2.37 -678.02 -1.61 -29.14 16 16 C -0.24 -12.58 8.04 84.03 0.68 -11.91 16 17 H 0.06 2.91 7.14 -2.91 -0.02 2.89 16 18 C -0.04 -2.13 4.96 84.86 0.42 -1.71 16 19 N -0.92 -53.29 11.43 21.65 0.25 -53.04 16 20 Si 0.95 44.20 29.60 68.60 2.03 46.23 16 21 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 22 H -0.30 -14.39 7.11 99.48 0.71 -13.68 16 23 H -0.28 -12.58 7.11 99.48 0.71 -11.88 16 24 C 0.15 5.87 3.37 44.99 0.15 6.02 16 25 C -0.14 -4.63 9.19 71.98 0.66 -3.97 16 26 C -0.14 -5.36 9.11 71.98 0.66 -4.70 16 27 C -0.12 -3.26 9.53 22.63 0.22 -3.04 16 28 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 29 H 0.10 0.35 8.14 -2.39 -0.02 0.34 16 30 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 31 H 0.08 0.59 7.66 -2.39 -0.02 0.58 16 32 H 0.08 0.58 7.66 -2.39 -0.02 0.56 16 33 H 0.16 1.19 6.28 -2.91 -0.02 1.17 16 34 H 0.17 0.93 8.06 -2.91 -0.02 0.90 16 35 H 0.15 1.93 6.40 -2.91 -0.02 1.91 16 36 H 0.41 8.96 6.50 -92.71 -0.60 8.36 16 37 H 0.06 2.15 8.14 -2.39 -0.02 2.13 16 38 H 0.04 1.76 8.14 -2.39 -0.02 1.74 16 39 H 0.07 2.24 8.14 -2.39 -0.02 2.22 16 40 H 0.05 2.09 8.14 -2.39 -0.02 2.07 16 41 H 0.06 3.24 5.48 -2.39 -0.01 3.22 16 42 H 0.03 1.12 7.88 -2.39 -0.02 1.10 16 43 H 0.25 14.15 8.31 -92.71 -0.77 13.38 16 44 H 0.06 2.09 7.77 -2.39 -0.02 2.07 16 45 H 0.04 1.32 7.32 -2.39 -0.02 1.30 16 46 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 47 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 48 H 0.02 1.00 8.14 -2.39 -0.02 0.98 16 49 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 50 H 0.04 1.56 7.50 -2.39 -0.02 1.55 16 51 H 0.12 3.64 7.65 -2.91 -0.02 3.61 16 Total: -1.00 -71.18 413.34 3.79 -67.39 By element: Atomic # 1 Polarization: 20.75 SS G_CDS: 0.31 Total: 21.06 kcal Atomic # 6 Polarization: -4.30 SS G_CDS: 6.38 Total: 2.08 kcal Atomic # 7 Polarization: -100.94 SS G_CDS: -3.92 Total: -104.87 kcal Atomic # 8 Polarization: -30.89 SS G_CDS: -1.00 Total: -31.89 kcal Atomic # 14 Polarization: 44.20 SS G_CDS: 2.03 Total: 46.23 kcal Total: -71.18 3.79 -67.39 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567649151.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.099 kcal (2) G-P(sol) polarization free energy of solvation -71.183 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.794 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.389 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.290 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds