Wall clock time and date at job start Tue Mar 31 2020 19:21:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42894 * 109.47324 * 2 1 4 4 C 1.35900 * 117.00086 * 180.02562 * 3 2 1 5 5 C 1.38740 * 120.05712 * 180.02562 * 4 3 2 6 6 C 1.38139 * 119.94681 * 180.02562 * 5 4 3 7 7 C 1.38269 * 120.05338 * 0.02562 * 6 5 4 8 8 C 1.50701 * 119.94136 * 179.97438 * 7 6 5 9 9 C 1.52997 * 109.47212 * 90.00102 * 8 7 6 10 10 C 1.50697 * 109.47466 * 179.97438 * 9 8 7 11 11 O 1.21288 * 120.00038 * 0.02562 * 10 9 8 12 12 N 1.34777 * 120.00369 * 180.02562 * 10 9 8 13 13 C 1.46505 * 120.00115 * 180.02562 * 12 10 9 14 14 H 1.08997 * 109.46680 * 34.99949 * 13 12 10 15 15 C 1.52995 * 109.46662 * 274.99892 * 13 12 10 16 16 C 1.52998 * 109.46792 * 154.99920 * 13 12 10 17 17 H 1.08996 * 109.47088 * 60.00169 * 16 13 12 18 18 C 1.52991 * 109.47609 * 299.99820 * 16 13 12 19 19 N 1.46500 * 109.46935 * 179.97438 * 16 13 12 20 20 C 1.36933 * 120.00568 * 204.99939 * 19 16 13 21 21 H 1.08006 * 119.99519 * 0.02562 * 20 19 16 22 22 C 1.38809 * 120.00649 * 180.02562 * 20 19 16 23 23 N 1.31620 * 119.99501 * 0.02562 * 22 20 19 24 24 Si 1.86795 * 120.00382 * 180.02562 * 22 20 19 25 25 H 1.48503 * 109.47341 * 59.99994 * 24 22 20 26 26 H 1.48505 * 109.47326 * 180.02562 * 24 22 20 27 27 H 1.48498 * 109.47146 * 299.99841 * 24 22 20 28 28 C 1.38261 * 120.11222 * 0.25270 * 7 6 5 29 29 C 1.38144 * 120.05633 * 359.45047 * 28 7 6 30 30 H 1.08996 * 109.46972 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.46990 * 300.00023 * 1 2 3 32 32 H 1.08998 * 109.47102 * 59.99979 * 1 2 3 33 33 H 1.09000 * 109.46990 * 239.99977 * 2 1 3 34 34 H 1.09000 * 109.47320 * 120.00523 * 2 1 3 35 35 H 1.07998 * 120.02343 * 0.02562 * 5 4 3 36 36 H 1.07999 * 119.97195 * 180.02562 * 6 5 4 37 37 H 1.09002 * 109.47060 * 210.00157 * 8 7 6 38 38 H 1.09001 * 109.47380 * 330.00244 * 8 7 6 39 39 H 1.09002 * 109.47153 * 299.99998 * 9 8 7 40 40 H 1.08998 * 109.47533 * 59.99628 * 9 8 7 41 41 H 0.97003 * 119.99640 * 0.02562 * 12 10 9 42 42 H 1.08998 * 109.47402 * 60.00125 * 15 13 12 43 43 H 1.09004 * 109.46813 * 180.02562 * 15 13 12 44 44 H 1.08997 * 109.47619 * 299.99482 * 15 13 12 45 45 H 1.09000 * 109.47312 * 59.99780 * 18 16 13 46 46 H 1.08998 * 109.47517 * 180.02562 * 18 16 13 47 47 H 1.09007 * 109.47264 * 300.00730 * 18 16 13 48 48 H 0.97003 * 119.99983 * 25.00288 * 19 16 13 49 49 H 0.97006 * 119.99753 * 179.97438 * 23 22 20 50 50 H 1.07999 * 119.97190 * 179.70663 * 28 7 6 51 51 H 1.08001 * 120.03140 * 180.25189 * 29 28 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.3537 1.5252 -0.0005 5 6 3.8853 2.8068 0.0000 6 6 5.2551 2.9851 -0.0011 7 6 6.0963 1.8877 -0.0032 8 6 7.5903 2.0852 -0.0050 9 6 8.0978 2.1506 1.4368 10 6 9.5918 2.3475 1.4351 11 8 10.1917 2.4280 0.3841 12 7 10.2615 2.4340 2.6015 13 6 11.7140 2.6259 2.5998 14 1 11.9957 3.2591 1.7585 15 6 12.4075 1.2683 2.4712 16 6 12.1414 3.2952 3.9076 17 1 11.8596 2.6620 4.7488 18 6 11.4478 4.6528 4.0363 19 7 13.5939 3.4866 3.9061 20 6 14.2741 3.5745 5.0913 21 1 13.7399 3.5023 6.0272 22 6 15.6503 3.7563 5.0900 23 7 16.3012 3.8448 3.9494 24 14 16.5783 3.8755 6.7067 25 1 16.3825 2.6249 7.4832 26 1 18.0253 4.0679 6.4339 27 1 16.0648 5.0290 7.4883 28 6 5.5690 0.6096 -0.0096 29 6 4.1999 0.4259 -0.0023 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 1.8934 -0.5139 0.8899 35 1 3.2286 3.6642 0.0012 36 1 5.6693 3.9825 -0.0003 37 1 8.0664 1.2509 -0.5203 38 1 7.8332 3.0156 -0.5183 39 1 7.6216 2.9848 1.9521 40 1 7.8549 1.2203 1.9502 41 1 9.7818 2.3692 3.4422 42 1 12.1029 0.7915 1.5395 43 1 13.4882 1.4110 2.4704 44 1 12.1258 0.6351 3.3125 45 1 10.3672 4.5101 4.0375 46 1 11.7527 5.1298 4.9677 47 1 11.7296 5.2860 3.1949 48 1 14.0737 3.5511 3.0656 49 1 17.2628 3.9723 3.9484 50 1 6.2281 -0.2459 -0.0160 51 1 3.7885 -0.5727 -0.0031 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001570614000.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:21:46 Heat of formation + Delta-G solvation = -60.068276 kcal Electronic energy + Delta-G solvation = -27588.392100 eV Core-core repulsion = 23680.592615 eV Total energy + Delta-G solvation = -3907.799484 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.53644 -39.70662 -38.17216 -36.74939 -33.93149 -33.81258 -32.15808 -31.70104 -31.21734 -29.85488 -28.68418 -28.33185 -24.92797 -24.28984 -23.98092 -22.65091 -22.26231 -21.08762 -20.15875 -19.80463 -18.63503 -17.43522 -17.04911 -16.52684 -16.42302 -15.62155 -15.47242 -15.30727 -14.69279 -14.61173 -14.13332 -13.86744 -13.81393 -13.65514 -13.59295 -13.44537 -13.10169 -13.04745 -12.80220 -12.72751 -12.41209 -12.15179 -11.96379 -11.82579 -11.67845 -11.54738 -11.30284 -11.16001 -11.04771 -10.95378 -10.93733 -10.82628 -10.67033 -10.24435 -9.89186 -9.78476 -9.56113 -9.30263 -9.00195 -8.71974 -8.36514 -6.99227 -5.77798 -3.07429 1.04061 1.10970 2.80058 2.83039 3.30968 3.42931 3.47192 3.48595 3.53091 4.38758 4.42620 4.53222 4.56349 4.60412 4.61708 4.74701 4.88025 4.92706 5.00067 5.05970 5.15743 5.21248 5.28362 5.32876 5.41387 5.49035 5.50413 5.54184 5.62996 5.69687 5.77173 5.81305 5.91344 5.96059 6.03405 6.06258 6.11472 6.25071 6.40439 6.40761 6.43900 6.47889 6.54469 6.64735 6.82148 6.97574 7.03921 7.07000 7.67403 7.74410 8.39392 8.44731 9.51123 10.06782 10.41835 11.44499 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.031556 B = 0.001576 C = 0.001561 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 887.101581 B =17759.717559 C =17936.137030 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.054 3.946 3 O -0.319 6.319 4 C 0.122 3.878 5 C -0.150 4.150 6 C -0.075 4.075 7 C -0.116 4.116 8 C -0.061 4.061 9 C -0.135 4.135 10 C 0.509 3.491 11 O -0.544 6.544 12 N -0.719 5.719 13 C 0.135 3.865 14 H 0.084 0.916 15 C -0.152 4.152 16 C 0.169 3.831 17 H 0.050 0.950 18 C -0.164 4.164 19 N -0.718 5.718 20 C -0.240 4.240 21 H 0.070 0.930 22 C -0.011 4.011 23 N -0.931 5.931 24 Si 0.907 3.093 25 H -0.286 1.286 26 H -0.291 1.291 27 H -0.286 1.286 28 C -0.075 4.075 29 C -0.207 4.207 30 H 0.078 0.922 31 H 0.066 0.934 32 H 0.066 0.934 33 H 0.061 0.939 34 H 0.062 0.938 35 H 0.129 0.871 36 H 0.130 0.870 37 H 0.079 0.921 38 H 0.080 0.920 39 H 0.092 0.908 40 H 0.091 0.909 41 H 0.397 0.603 42 H 0.046 0.954 43 H 0.079 0.921 44 H 0.049 0.951 45 H 0.035 0.965 46 H 0.054 0.946 47 H 0.046 0.954 48 H 0.385 0.615 49 H 0.256 0.744 50 H 0.125 0.875 51 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.731 -7.912 -7.803 32.679 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.021 4.021 3 O -0.233 6.233 4 C 0.077 3.923 5 C -0.169 4.169 6 C -0.093 4.093 7 C -0.117 4.117 8 C -0.098 4.098 9 C -0.175 4.175 10 C 0.295 3.705 11 O -0.422 6.422 12 N -0.370 5.370 13 C 0.030 3.970 14 H 0.102 0.898 15 C -0.210 4.210 16 C 0.058 3.942 17 H 0.067 0.933 18 C -0.224 4.224 19 N -0.360 5.360 20 C -0.371 4.371 21 H 0.088 0.912 22 C -0.207 4.207 23 N -0.579 5.579 24 Si 0.738 3.262 25 H -0.213 1.213 26 H -0.217 1.217 27 H -0.213 1.213 28 C -0.094 4.094 29 C -0.226 4.226 30 H 0.097 0.903 31 H 0.085 0.915 32 H 0.085 0.915 33 H 0.079 0.921 34 H 0.080 0.920 35 H 0.147 0.853 36 H 0.148 0.852 37 H 0.097 0.903 38 H 0.099 0.901 39 H 0.111 0.889 40 H 0.110 0.890 41 H 0.231 0.769 42 H 0.065 0.935 43 H 0.098 0.902 44 H 0.068 0.932 45 H 0.054 0.946 46 H 0.073 0.927 47 H 0.065 0.935 48 H 0.219 0.781 49 H 0.066 0.934 50 H 0.143 0.857 51 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -30.354 -7.716 -8.386 32.422 hybrid contribution 0.542 -0.160 1.130 1.264 sum -29.812 -7.875 -7.256 31.676 Atomic orbital electron populations 1.21779 0.92717 1.02899 1.03560 1.22774 0.95886 0.82011 1.01411 1.86062 1.19190 1.29275 1.88747 1.19002 0.82161 0.94232 0.96864 1.20432 0.95244 0.94775 1.06426 1.20925 0.91981 0.98961 0.97479 1.19863 0.95837 0.93003 1.02950 1.20264 0.89775 1.04307 0.95486 1.21669 0.92511 1.04268 0.99068 1.20619 0.89598 0.76291 0.83950 1.90706 1.70243 1.49995 1.31219 1.46123 1.09030 1.73572 1.08231 1.21319 0.78036 0.97333 1.00282 0.89797 1.22042 1.02373 0.96228 1.00374 1.20389 0.86712 0.93590 0.93527 0.93252 1.22441 0.97876 1.00168 1.01911 1.42284 0.99969 1.87135 1.06619 1.19150 0.89845 1.42255 0.85882 0.91229 1.24733 0.96496 1.02761 0.96740 1.69656 1.07879 1.56438 1.23911 0.86276 0.79028 0.77813 0.83079 1.21292 1.21701 1.21315 1.20882 0.94165 0.96938 0.97372 1.21220 0.94357 0.97946 1.09053 0.90345 0.91478 0.91514 0.92063 0.92023 0.85287 0.85167 0.90254 0.90135 0.88918 0.89046 0.76937 0.93511 0.90189 0.93173 0.94570 0.92704 0.93451 0.78058 0.93407 0.85678 0.85654 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.63 10.28 37.16 0.38 -0.25 16 2 C 0.05 0.31 5.46 37.16 0.20 0.51 16 3 O -0.32 -2.83 10.14 -19.43 -0.20 -3.03 16 4 C 0.12 1.13 6.69 -39.21 -0.26 0.87 16 5 C -0.15 -1.34 9.99 -39.43 -0.39 -1.73 16 6 C -0.08 -0.65 9.69 -39.61 -0.38 -1.03 16 7 C -0.12 -1.04 5.13 -104.60 -0.54 -1.58 16 8 C -0.06 -0.59 4.63 -27.88 -0.13 -0.71 16 9 C -0.14 -1.26 5.68 -27.89 -0.16 -1.42 16 10 C 0.51 6.88 7.79 -10.99 -0.09 6.80 16 11 O -0.54 -9.61 15.65 5.55 0.09 -9.52 16 12 N -0.72 -9.54 4.38 -53.81 -0.24 -9.78 16 13 C 0.14 2.30 2.21 -67.93 -0.15 2.15 16 14 H 0.08 1.63 7.58 -51.93 -0.39 1.24 16 15 C -0.15 -2.64 9.33 37.15 0.35 -2.30 16 16 C 0.17 3.20 2.52 -67.94 -0.17 3.03 16 17 H 0.05 0.93 8.08 -51.93 -0.42 0.51 16 18 C -0.16 -2.88 9.33 37.15 0.35 -2.53 16 19 N -0.72 -17.42 4.43 -53.43 -0.24 -17.66 16 20 C -0.24 -6.48 9.93 -15.06 -0.15 -6.63 16 21 H 0.07 1.81 7.83 -52.48 -0.41 1.40 16 22 C -0.01 -0.31 5.50 -17.43 -0.10 -0.41 16 23 N -0.93 -27.78 13.06 55.49 0.72 -27.06 16 24 Si 0.91 22.09 29.55 -169.99 -5.02 17.07 16 25 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 26 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 27 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 28 C -0.08 -0.64 9.69 -39.61 -0.38 -1.02 16 29 C -0.21 -1.71 9.04 -39.43 -0.36 -2.07 16 30 H 0.08 0.19 8.14 -51.93 -0.42 -0.24 16 31 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 32 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 33 H 0.06 0.30 7.66 -51.93 -0.40 -0.10 16 34 H 0.06 0.30 7.67 -51.93 -0.40 -0.09 16 35 H 0.13 0.99 8.06 -52.49 -0.42 0.57 16 36 H 0.13 0.93 8.06 -52.49 -0.42 0.50 16 37 H 0.08 0.82 8.04 -51.93 -0.42 0.41 16 38 H 0.08 0.84 8.04 -51.93 -0.42 0.43 16 39 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 40 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 41 H 0.40 4.20 8.39 -40.82 -0.34 3.86 16 42 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 43 H 0.08 1.59 7.44 -51.93 -0.39 1.20 16 44 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 45 H 0.04 0.51 7.45 -51.93 -0.39 0.13 16 46 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 47 H 0.05 0.88 8.14 -51.92 -0.42 0.45 16 48 H 0.39 10.10 7.58 -40.82 -0.31 9.79 16 49 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 50 H 0.13 0.88 8.06 -52.49 -0.42 0.46 16 51 H 0.13 0.79 6.30 -52.49 -0.33 0.46 16 LS Contribution 419.24 15.07 6.32 6.32 Total: -1.00 -32.53 419.24 -9.36 -41.89 By element: Atomic # 1 Polarization: 18.91 SS G_CDS: -8.82 Total: 10.09 kcal Atomic # 6 Polarization: -6.34 SS G_CDS: -1.98 Total: -8.32 kcal Atomic # 7 Polarization: -54.75 SS G_CDS: 0.25 Total: -54.50 kcal Atomic # 8 Polarization: -12.43 SS G_CDS: -0.11 Total: -12.54 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.02 Total: 17.07 kcal Total LS contribution 6.32 Total: 6.32 kcal Total: -32.53 -9.36 -41.89 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570614000.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.180 kcal (2) G-P(sol) polarization free energy of solvation -32.527 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.707 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.362 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.888 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.068 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds