Wall clock time and date at job start Tue Mar 31 2020 19:21:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42894 * 109.47324 * 2 1 4 4 C 1.35900 * 117.00086 * 180.02562 * 3 2 1 5 5 C 1.38740 * 120.05712 * 180.02562 * 4 3 2 6 6 C 1.38139 * 119.94681 * 180.02562 * 5 4 3 7 7 C 1.38269 * 120.05338 * 0.02562 * 6 5 4 8 8 C 1.50701 * 119.94136 * 179.97438 * 7 6 5 9 9 C 1.52997 * 109.47212 * 90.00102 * 8 7 6 10 10 C 1.50697 * 109.47466 * 179.97438 * 9 8 7 11 11 O 1.21288 * 120.00038 * 0.02562 * 10 9 8 12 12 N 1.34777 * 120.00369 * 180.02562 * 10 9 8 13 13 C 1.46505 * 120.00115 * 180.02562 * 12 10 9 14 14 H 1.08997 * 109.46680 * 34.99949 * 13 12 10 15 15 C 1.52995 * 109.46662 * 274.99892 * 13 12 10 16 16 C 1.52998 * 109.46792 * 154.99920 * 13 12 10 17 17 H 1.08996 * 109.47088 * 60.00169 * 16 13 12 18 18 C 1.52991 * 109.47609 * 299.99820 * 16 13 12 19 19 N 1.46500 * 109.46935 * 179.97438 * 16 13 12 20 20 C 1.36933 * 120.00568 * 204.99939 * 19 16 13 21 21 H 1.08006 * 119.99519 * 0.02562 * 20 19 16 22 22 C 1.38809 * 120.00649 * 180.02562 * 20 19 16 23 23 N 1.31620 * 119.99501 * 0.02562 * 22 20 19 24 24 Si 1.86795 * 120.00382 * 180.02562 * 22 20 19 25 25 H 1.48503 * 109.47341 * 59.99994 * 24 22 20 26 26 H 1.48505 * 109.47326 * 180.02562 * 24 22 20 27 27 H 1.48498 * 109.47146 * 299.99841 * 24 22 20 28 28 C 1.38261 * 120.11222 * 0.25270 * 7 6 5 29 29 C 1.38144 * 120.05633 * 359.45047 * 28 7 6 30 30 H 1.08996 * 109.46972 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.46990 * 300.00023 * 1 2 3 32 32 H 1.08998 * 109.47102 * 59.99979 * 1 2 3 33 33 H 1.09000 * 109.46990 * 239.99977 * 2 1 3 34 34 H 1.09000 * 109.47320 * 120.00523 * 2 1 3 35 35 H 1.07998 * 120.02343 * 0.02562 * 5 4 3 36 36 H 1.07999 * 119.97195 * 180.02562 * 6 5 4 37 37 H 1.09002 * 109.47060 * 210.00157 * 8 7 6 38 38 H 1.09001 * 109.47380 * 330.00244 * 8 7 6 39 39 H 1.09002 * 109.47153 * 299.99998 * 9 8 7 40 40 H 1.08998 * 109.47533 * 59.99628 * 9 8 7 41 41 H 0.97003 * 119.99640 * 0.02562 * 12 10 9 42 42 H 1.08998 * 109.47402 * 60.00125 * 15 13 12 43 43 H 1.09004 * 109.46813 * 180.02562 * 15 13 12 44 44 H 1.08997 * 109.47619 * 299.99482 * 15 13 12 45 45 H 1.09000 * 109.47312 * 59.99780 * 18 16 13 46 46 H 1.08998 * 109.47517 * 180.02562 * 18 16 13 47 47 H 1.09007 * 109.47264 * 300.00730 * 18 16 13 48 48 H 0.97003 * 119.99983 * 25.00288 * 19 16 13 49 49 H 0.97006 * 119.99753 * 179.97438 * 23 22 20 50 50 H 1.07999 * 119.97190 * 179.70663 * 28 7 6 51 51 H 1.08001 * 120.03140 * 180.25189 * 29 28 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.3537 1.5252 -0.0005 5 6 3.8853 2.8068 0.0000 6 6 5.2551 2.9851 -0.0011 7 6 6.0963 1.8877 -0.0032 8 6 7.5903 2.0852 -0.0050 9 6 8.0978 2.1506 1.4368 10 6 9.5918 2.3475 1.4351 11 8 10.1917 2.4280 0.3841 12 7 10.2615 2.4340 2.6015 13 6 11.7140 2.6259 2.5998 14 1 11.9957 3.2591 1.7585 15 6 12.4075 1.2683 2.4712 16 6 12.1414 3.2952 3.9076 17 1 11.8596 2.6620 4.7488 18 6 11.4478 4.6528 4.0363 19 7 13.5939 3.4866 3.9061 20 6 14.2741 3.5745 5.0913 21 1 13.7399 3.5023 6.0272 22 6 15.6503 3.7563 5.0900 23 7 16.3012 3.8448 3.9494 24 14 16.5783 3.8755 6.7067 25 1 16.3825 2.6249 7.4832 26 1 18.0253 4.0679 6.4339 27 1 16.0648 5.0290 7.4883 28 6 5.5690 0.6096 -0.0096 29 6 4.1999 0.4259 -0.0023 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 1.8934 -0.5139 0.8899 35 1 3.2286 3.6642 0.0012 36 1 5.6693 3.9825 -0.0003 37 1 8.0664 1.2509 -0.5203 38 1 7.8332 3.0156 -0.5183 39 1 7.6216 2.9848 1.9521 40 1 7.8549 1.2203 1.9502 41 1 9.7818 2.3692 3.4422 42 1 12.1029 0.7915 1.5395 43 1 13.4882 1.4110 2.4704 44 1 12.1258 0.6351 3.3125 45 1 10.3672 4.5101 4.0375 46 1 11.7527 5.1298 4.9677 47 1 11.7296 5.2860 3.1949 48 1 14.0737 3.5511 3.0656 49 1 17.2628 3.9723 3.9484 50 1 6.2281 -0.2459 -0.0160 51 1 3.7885 -0.5727 -0.0031 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001570614000.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:21:45 Heat of formation + Delta-G solvation = -79.260782 kcal Electronic energy + Delta-G solvation = -27589.224349 eV Core-core repulsion = 23680.592615 eV Total energy + Delta-G solvation = -3908.631734 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.19593 -40.80941 -38.85542 -38.19597 -35.55934 -34.59666 -33.50009 -32.58988 -31.81061 -31.17589 -30.13178 -29.48210 -25.90923 -25.72828 -24.86749 -23.95687 -22.90207 -21.83489 -21.50022 -21.03269 -19.33754 -19.20428 -18.15211 -17.11542 -17.02298 -16.95253 -16.59869 -16.25188 -16.11368 -15.39586 -15.33928 -15.27605 -14.83463 -14.73568 -14.43810 -14.38663 -14.25163 -14.06180 -13.84138 -13.46623 -13.37816 -13.31470 -13.14267 -12.91584 -12.69869 -12.60730 -12.56257 -12.49893 -12.26370 -12.23245 -12.19619 -11.98139 -11.71764 -11.57510 -11.54957 -11.43646 -10.96084 -10.79296 -10.02095 -9.92339 -9.01495 -8.99431 -7.90747 -5.19705 0.42044 0.45716 1.49697 1.52227 1.58153 1.75672 2.23211 2.29895 2.61220 2.82403 3.43331 3.71434 3.84590 3.85715 3.98111 4.05301 4.06389 4.10019 4.13282 4.22813 4.28784 4.35446 4.37924 4.41464 4.47710 4.52949 4.60979 4.66854 4.74604 4.83336 4.91125 4.92794 4.94590 4.97922 4.98973 5.07654 5.15930 5.21087 5.22132 5.26809 5.33020 5.37370 5.44036 5.52915 5.53785 5.65180 5.74993 5.87455 6.29935 6.49558 6.68388 7.36220 7.38625 8.10399 8.33489 9.32571 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.031556 B = 0.001576 C = 0.001561 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 887.101581 B =17759.717559 C =17936.137030 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.046 3.954 3 O -0.335 6.335 4 C 0.110 3.890 5 C -0.163 4.163 6 C -0.079 4.079 7 C -0.122 4.122 8 C -0.055 4.055 9 C -0.122 4.122 10 C 0.509 3.491 11 O -0.589 6.589 12 N -0.707 5.707 13 C 0.150 3.850 14 H 0.056 0.944 15 C -0.143 4.143 16 C 0.167 3.833 17 H 0.061 0.939 18 C -0.154 4.154 19 N -0.731 5.731 20 C -0.235 4.235 21 H 0.080 0.920 22 C -0.075 4.075 23 N -0.971 5.971 24 Si 0.971 3.029 25 H -0.277 1.277 26 H -0.300 1.300 27 H -0.279 1.279 28 C -0.080 4.080 29 C -0.210 4.210 30 H 0.098 0.902 31 H 0.062 0.938 32 H 0.061 0.939 33 H 0.069 0.931 34 H 0.070 0.930 35 H 0.135 0.865 36 H 0.142 0.858 37 H 0.068 0.932 38 H 0.068 0.932 39 H 0.116 0.884 40 H 0.116 0.884 41 H 0.415 0.585 42 H 0.047 0.953 43 H 0.048 0.952 44 H 0.064 0.936 45 H 0.076 0.924 46 H 0.041 0.959 47 H 0.030 0.970 48 H 0.371 0.629 49 H 0.249 0.751 50 H 0.139 0.861 51 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -33.288 -8.857 -6.358 35.028 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.029 4.029 3 O -0.250 6.250 4 C 0.065 3.935 5 C -0.181 4.181 6 C -0.097 4.097 7 C -0.122 4.122 8 C -0.093 4.093 9 C -0.162 4.162 10 C 0.297 3.703 11 O -0.469 6.469 12 N -0.359 5.359 13 C 0.044 3.956 14 H 0.074 0.926 15 C -0.201 4.201 16 C 0.058 3.942 17 H 0.079 0.921 18 C -0.214 4.214 19 N -0.371 5.371 20 C -0.367 4.367 21 H 0.098 0.902 22 C -0.268 4.268 23 N -0.621 5.621 24 Si 0.801 3.199 25 H -0.203 1.203 26 H -0.227 1.227 27 H -0.205 1.205 28 C -0.098 4.098 29 C -0.228 4.228 30 H 0.117 0.883 31 H 0.081 0.919 32 H 0.080 0.920 33 H 0.087 0.913 34 H 0.088 0.912 35 H 0.153 0.847 36 H 0.159 0.841 37 H 0.087 0.913 38 H 0.086 0.914 39 H 0.134 0.866 40 H 0.134 0.866 41 H 0.252 0.748 42 H 0.066 0.934 43 H 0.067 0.933 44 H 0.083 0.917 45 H 0.094 0.906 46 H 0.060 0.940 47 H 0.050 0.950 48 H 0.203 0.797 49 H 0.058 0.942 50 H 0.156 0.844 51 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -32.998 -8.671 -6.894 34.808 hybrid contribution 1.196 0.097 0.629 1.355 sum -31.802 -8.575 -6.266 33.528 Atomic orbital electron populations 1.21807 0.91689 1.04100 1.03132 1.23027 0.96767 0.80891 1.02182 1.86049 1.19078 1.31160 1.88732 1.19222 0.82585 0.94678 0.96989 1.20618 0.95592 0.95189 1.06749 1.21075 0.91901 0.99520 0.97169 1.19810 0.95197 0.93451 1.03774 1.20157 0.90303 1.03266 0.95561 1.21668 0.88780 1.06400 0.99354 1.21381 0.91204 0.74785 0.82939 1.90700 1.71515 1.51872 1.32862 1.45915 1.07258 1.73365 1.09407 1.20847 0.80423 0.96293 0.98057 0.92592 1.21921 1.00402 0.96744 1.01043 1.20579 0.84041 0.94763 0.94815 0.92102 1.22295 1.00182 0.98436 1.00468 1.42474 1.02194 1.87190 1.05275 1.19571 0.90170 1.39896 0.87052 0.90182 1.25525 0.97658 1.03880 0.99696 1.69828 1.07527 1.58752 1.26035 0.85245 0.77049 0.78152 0.79495 1.20285 1.22672 1.20502 1.21082 0.94520 0.97210 0.96953 1.21427 0.94247 0.98612 1.08554 0.88323 0.91883 0.91950 0.91300 0.91157 0.84709 0.84063 0.91301 0.91375 0.86631 0.86576 0.74810 0.93359 0.93280 0.91742 0.90571 0.93969 0.95035 0.79732 0.94215 0.84358 0.83920 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.02 10.28 71.98 0.74 -0.28 16 2 C 0.05 0.45 5.46 71.98 0.39 0.84 16 3 O -0.34 -5.60 10.14 -92.42 -0.94 -6.54 16 4 C 0.11 1.89 6.69 22.51 0.15 2.04 16 5 C -0.16 -2.72 9.99 22.37 0.22 -2.49 16 6 C -0.08 -1.23 9.69 22.25 0.22 -1.02 16 7 C -0.12 -1.96 5.13 -19.85 -0.10 -2.06 16 8 C -0.05 -0.98 4.63 29.85 0.14 -0.84 16 9 C -0.12 -1.92 5.68 29.85 0.17 -1.75 16 10 C 0.51 12.81 7.79 87.66 0.68 13.50 16 11 O -0.59 -20.64 15.65 -3.05 -0.05 -20.69 16 12 N -0.71 -17.14 4.38 -442.54 -1.94 -19.08 16 13 C 0.15 5.01 2.21 44.99 0.10 5.11 16 14 H 0.06 2.22 7.58 -2.39 -0.02 2.20 16 15 C -0.14 -4.94 9.33 71.98 0.67 -4.27 16 16 C 0.17 6.15 2.52 44.99 0.11 6.26 16 17 H 0.06 2.13 8.08 -2.39 -0.02 2.11 16 18 C -0.15 -5.14 9.33 71.98 0.67 -4.47 16 19 N -0.73 -35.74 4.43 -322.96 -1.43 -37.17 16 20 C -0.24 -12.62 9.93 84.03 0.83 -11.79 16 21 H 0.08 4.05 7.83 -2.91 -0.02 4.03 16 22 C -0.08 -4.27 5.50 84.86 0.47 -3.80 16 23 N -0.97 -59.38 13.06 21.65 0.28 -59.10 16 24 Si 0.97 45.56 29.55 68.60 2.03 47.59 16 25 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 26 H -0.30 -14.40 7.11 99.48 0.71 -13.69 16 27 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 28 C -0.08 -1.18 9.69 22.25 0.22 -0.97 16 29 C -0.21 -3.08 9.04 22.37 0.20 -2.87 16 30 H 0.10 0.26 8.14 -2.39 -0.02 0.24 16 31 H 0.06 0.48 8.14 -2.39 -0.02 0.46 16 32 H 0.06 0.47 8.14 -2.39 -0.02 0.46 16 33 H 0.07 0.56 7.66 -2.39 -0.02 0.54 16 34 H 0.07 0.56 7.67 -2.39 -0.02 0.54 16 35 H 0.14 1.97 8.06 -2.91 -0.02 1.94 16 36 H 0.14 1.79 8.06 -2.91 -0.02 1.77 16 37 H 0.07 1.36 8.04 -2.39 -0.02 1.35 16 38 H 0.07 1.38 8.04 -2.39 -0.02 1.36 16 39 H 0.12 1.37 8.14 -2.39 -0.02 1.35 16 40 H 0.12 1.33 8.14 -2.39 -0.02 1.31 16 41 H 0.41 7.21 8.39 -92.71 -0.78 6.43 16 42 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 43 H 0.05 2.00 7.44 -2.38 -0.02 1.98 16 44 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 45 H 0.08 1.91 7.45 -2.39 -0.02 1.89 16 46 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16 47 H 0.03 1.13 8.14 -2.38 -0.02 1.12 16 48 H 0.37 20.10 7.58 -92.71 -0.70 19.40 16 49 H 0.25 14.92 8.31 -92.70 -0.77 14.15 16 50 H 0.14 1.62 8.06 -2.91 -0.02 1.59 16 51 H 0.14 1.48 6.30 -2.91 -0.02 1.46 16 Total: -1.00 -71.64 419.24 3.28 -68.37 By element: Atomic # 1 Polarization: 36.04 SS G_CDS: -0.56 Total: 35.48 kcal Atomic # 6 Polarization: -14.74 SS G_CDS: 5.89 Total: -8.85 kcal Atomic # 7 Polarization: -112.26 SS G_CDS: -3.09 Total: -115.35 kcal Atomic # 8 Polarization: -26.24 SS G_CDS: -0.98 Total: -27.23 kcal Atomic # 14 Polarization: 45.56 SS G_CDS: 2.03 Total: 47.59 kcal Total: -71.64 3.28 -68.37 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570614000.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.894 kcal (2) G-P(sol) polarization free energy of solvation -71.645 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.538 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.278 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.367 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.261 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds