Wall clock time and date at job start Tue Mar 31 2020 19:21:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42900 * 109.47129 * 2 1 4 4 C 1.35900 * 116.99976 * 179.97438 * 3 2 1 5 5 C 1.38735 * 120.05574 * 180.02562 * 4 3 2 6 6 C 1.38145 * 119.94351 * 180.02562 * 5 4 3 7 7 C 1.38266 * 120.05487 * 0.02562 * 6 5 4 8 8 C 1.50696 * 119.94227 * 179.97438 * 7 6 5 9 9 C 1.53003 * 109.46781 * 90.00409 * 8 7 6 10 10 C 1.50704 * 109.47208 * 179.97438 * 9 8 7 11 11 O 1.21278 * 119.99731 * 0.02562 * 10 9 8 12 12 N 1.34776 * 120.00418 * 180.02562 * 10 9 8 13 13 C 1.46500 * 120.00386 * 179.97438 * 12 10 9 14 14 H 1.08998 * 109.46878 * 35.00073 * 13 12 10 15 15 C 1.53001 * 109.47290 * 275.00236 * 13 12 10 16 16 C 1.52999 * 109.47037 * 154.99951 * 13 12 10 17 17 H 1.09004 * 109.47434 * 295.00363 * 16 13 12 18 18 C 1.52997 * 109.47114 * 55.00170 * 16 13 12 19 19 N 1.46498 * 109.46963 * 174.99963 * 16 13 12 20 20 C 1.36943 * 119.99752 * 154.72381 * 19 16 13 21 21 H 1.08002 * 119.99793 * 0.27665 * 20 19 16 22 22 C 1.38811 * 120.00012 * 180.27737 * 20 19 16 23 23 N 1.31611 * 120.00081 * 180.02562 * 22 20 19 24 24 Si 1.86800 * 119.99814 * 0.02562 * 22 20 19 25 25 H 1.48501 * 109.47483 * 90.00178 * 24 22 20 26 26 H 1.48498 * 109.47011 * 210.00042 * 24 22 20 27 27 H 1.48502 * 109.47495 * 329.99664 * 24 22 20 28 28 C 1.38269 * 120.11573 * 0.25566 * 7 6 5 29 29 C 1.38144 * 120.04981 * 359.45029 * 28 7 6 30 30 H 1.09002 * 109.47144 * 59.99835 * 1 2 3 31 31 H 1.09007 * 109.47255 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.47369 * 299.99992 * 1 2 3 33 33 H 1.09002 * 109.47369 * 240.00008 * 2 1 3 34 34 H 1.09002 * 109.47144 * 120.00165 * 2 1 3 35 35 H 1.07994 * 120.02391 * 0.02562 * 5 4 3 36 36 H 1.07993 * 119.97099 * 180.02562 * 6 5 4 37 37 H 1.09001 * 109.47811 * 330.00542 * 8 7 6 38 38 H 1.09001 * 109.47546 * 210.00158 * 8 7 6 39 39 H 1.08999 * 109.47030 * 60.00292 * 9 8 7 40 40 H 1.08991 * 109.47608 * 299.99968 * 9 8 7 41 41 H 0.96999 * 119.99467 * 0.02562 * 12 10 9 42 42 H 1.09000 * 109.47005 * 300.00291 * 15 13 12 43 43 H 1.09004 * 109.47050 * 59.99647 * 15 13 12 44 44 H 1.08998 * 109.47150 * 179.97438 * 15 13 12 45 45 H 1.09003 * 109.47189 * 300.00067 * 18 16 13 46 46 H 1.09009 * 109.47238 * 59.99946 * 18 16 13 47 47 H 1.08997 * 109.47293 * 179.97438 * 18 16 13 48 48 H 0.97001 * 120.00384 * 335.00737 * 19 16 13 49 49 H 0.97008 * 120.00329 * 179.97438 * 23 22 20 50 50 H 1.07997 * 119.97454 * 179.69968 * 28 7 6 51 51 H 1.08000 * 120.03145 * 180.25267 * 29 28 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3536 1.5253 0.0005 5 6 3.8851 2.8068 0.0011 6 6 5.2550 2.9851 0.0011 7 6 6.0962 1.8878 0.0000 8 6 7.5901 2.0852 -0.0005 9 6 8.0964 2.1510 1.4418 10 6 9.5905 2.3478 1.4414 11 8 10.1912 2.4281 0.3909 12 7 10.2592 2.4347 2.6083 13 6 11.7117 2.6255 2.6079 14 1 11.9948 3.2579 1.7665 15 6 12.4045 1.2672 2.4807 16 6 12.1385 3.2953 3.9156 17 1 11.7158 4.2988 3.9647 18 6 11.6320 2.4701 5.1002 19 7 13.6002 3.3779 3.9675 20 6 14.2048 4.3459 4.7243 21 1 13.6040 5.0455 5.2865 22 6 15.5898 4.4278 4.7690 23 7 16.1709 5.3578 5.4968 24 14 16.6288 3.2182 3.7961 25 1 16.8882 3.7666 2.4406 26 1 17.9197 2.9991 4.4967 27 1 15.9047 1.9271 3.6775 28 6 5.5690 0.6095 -0.0064 29 6 4.1998 0.4259 -0.0003 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3634 0.5138 0.8900 33 1 1.8934 -0.5138 -0.8900 34 1 1.8933 -0.5139 0.8900 35 1 3.2285 3.6642 0.0015 36 1 5.6692 3.9825 0.0020 37 1 7.8336 3.0155 -0.5138 38 1 8.0668 1.2509 -0.5151 39 1 7.8530 1.2207 1.9551 40 1 7.6198 2.9853 1.9565 41 1 9.7787 2.3701 3.4485 42 1 12.1213 0.6348 3.3221 43 1 12.1004 0.7900 1.5491 44 1 13.4852 1.4092 2.4799 45 1 10.5444 2.4086 5.0616 46 1 12.0546 1.4665 5.0512 47 1 11.9364 2.9470 6.0318 48 1 14.1398 2.7496 3.4625 49 1 17.1387 5.4148 5.5283 50 1 6.2281 -0.2460 -0.0121 51 1 3.7884 -0.5727 -0.0012 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001570614001.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:21:49 Heat of formation + Delta-G solvation = -51.529536 kcal Electronic energy + Delta-G solvation = -27673.025508 eV Core-core repulsion = 23765.596291 eV Total energy + Delta-G solvation = -3907.429217 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.56391 -39.83225 -38.22098 -37.09564 -34.02231 -33.86965 -32.19004 -31.80928 -31.24247 -30.02126 -28.81178 -28.54910 -25.10076 -24.48561 -24.18706 -22.77164 -22.32160 -21.15313 -20.19582 -19.28790 -18.65713 -18.01247 -17.11724 -16.54544 -16.45546 -15.68730 -15.50368 -15.41657 -14.83824 -14.66904 -14.28996 -14.09178 -13.87197 -13.85518 -13.77808 -13.57524 -13.22256 -12.99163 -12.79864 -12.71569 -12.54657 -12.19142 -12.10911 -11.94995 -11.77793 -11.63744 -11.52465 -11.33889 -11.11773 -11.06979 -10.98278 -10.90811 -10.59897 -10.35226 -10.04215 -9.75727 -9.57440 -9.32758 -8.97846 -8.87324 -8.39200 -7.32771 -5.79685 -3.16147 1.01552 1.08279 2.74218 2.78098 3.23952 3.36169 3.39507 3.44599 3.47914 4.36511 4.40954 4.50454 4.54336 4.56950 4.58052 4.72873 4.83151 4.88691 4.97462 5.02157 5.10471 5.17631 5.24171 5.26883 5.28073 5.37596 5.40775 5.44663 5.52549 5.55417 5.60278 5.64259 5.77403 5.90991 5.93267 5.99543 6.00854 6.03545 6.13183 6.25223 6.34139 6.37563 6.45103 6.45397 6.63171 6.76908 6.96468 7.04805 7.64250 7.95639 8.34784 8.39050 9.16833 9.89180 10.07941 11.38379 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.031866 B = 0.001637 C = 0.001624 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 878.464372 B =17096.395354 C =17242.113943 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.054 3.946 3 O -0.318 6.318 4 C 0.123 3.877 5 C -0.150 4.150 6 C -0.075 4.075 7 C -0.117 4.117 8 C -0.060 4.060 9 C -0.135 4.135 10 C 0.509 3.491 11 O -0.544 6.544 12 N -0.720 5.720 13 C 0.132 3.868 14 H 0.089 0.911 15 C -0.161 4.161 16 C 0.173 3.827 17 H 0.061 0.939 18 C -0.169 4.169 19 N -0.744 5.744 20 C -0.246 4.246 21 H 0.091 0.909 22 C 0.008 3.992 23 N -0.932 5.932 24 Si 0.881 3.119 25 H -0.283 1.283 26 H -0.290 1.290 27 H -0.277 1.277 28 C -0.076 4.076 29 C -0.207 4.207 30 H 0.066 0.934 31 H 0.078 0.922 32 H 0.066 0.934 33 H 0.061 0.939 34 H 0.062 0.938 35 H 0.130 0.870 36 H 0.131 0.869 37 H 0.080 0.920 38 H 0.079 0.921 39 H 0.092 0.908 40 H 0.094 0.906 41 H 0.399 0.601 42 H 0.059 0.941 43 H 0.053 0.947 44 H 0.066 0.934 45 H 0.036 0.964 46 H 0.051 0.949 47 H 0.062 0.938 48 H 0.363 0.637 49 H 0.260 0.740 50 H 0.125 0.875 51 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.711 -12.671 -10.568 34.862 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.021 4.021 3 O -0.233 6.233 4 C 0.078 3.922 5 C -0.169 4.169 6 C -0.093 4.093 7 C -0.117 4.117 8 C -0.098 4.098 9 C -0.175 4.175 10 C 0.295 3.705 11 O -0.421 6.421 12 N -0.373 5.373 13 C 0.027 3.973 14 H 0.107 0.893 15 C -0.219 4.219 16 C 0.063 3.937 17 H 0.079 0.921 18 C -0.229 4.229 19 N -0.388 5.388 20 C -0.375 4.375 21 H 0.109 0.891 22 C -0.188 4.188 23 N -0.580 5.580 24 Si 0.711 3.289 25 H -0.209 1.209 26 H -0.216 1.216 27 H -0.203 1.203 28 C -0.094 4.094 29 C -0.226 4.226 30 H 0.085 0.915 31 H 0.097 0.903 32 H 0.085 0.915 33 H 0.079 0.921 34 H 0.080 0.920 35 H 0.147 0.853 36 H 0.149 0.851 37 H 0.099 0.901 38 H 0.097 0.903 39 H 0.110 0.890 40 H 0.112 0.888 41 H 0.235 0.765 42 H 0.078 0.922 43 H 0.072 0.928 44 H 0.085 0.915 45 H 0.055 0.945 46 H 0.070 0.930 47 H 0.081 0.919 48 H 0.198 0.802 49 H 0.070 0.930 50 H 0.143 0.857 51 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -30.358 -12.263 -11.165 34.592 hybrid contribution 0.722 -1.164 -0.080 1.372 sum -29.636 -13.427 -11.245 34.424 Atomic orbital electron populations 1.21781 0.92701 1.02907 1.03576 1.22777 0.95903 0.81997 1.01402 1.86066 1.19175 1.29285 1.88726 1.19006 0.82175 0.94229 0.96802 1.20438 0.95250 0.94793 1.06375 1.20928 0.91988 0.98968 0.97433 1.19852 0.95794 0.93014 1.03063 1.20262 0.89840 1.04306 0.95409 1.21675 0.92351 1.04353 0.99160 1.20672 0.89708 0.76159 0.83915 1.90702 1.70214 1.49900 1.31311 1.46245 1.08806 1.73790 1.08482 1.21322 0.78514 0.97079 1.00382 0.89323 1.22164 1.01113 0.97171 1.01477 1.20331 0.85850 0.97056 0.90498 0.92145 1.22500 0.97871 1.01167 1.01328 1.42797 1.00115 1.38089 1.57845 1.19053 0.90439 1.07088 1.20951 0.89116 1.24643 0.96280 0.98255 0.99671 1.69693 1.09376 1.35123 1.43765 0.86615 0.80502 0.81499 0.80276 1.20918 1.21645 1.20307 1.20877 0.94168 0.96910 0.97413 1.21221 0.94353 0.97954 1.09064 0.91507 0.90339 0.91463 0.92068 0.92020 0.85251 0.85138 0.90103 0.90286 0.89001 0.88792 0.76534 0.92250 0.92785 0.91497 0.94502 0.92970 0.91917 0.80241 0.93006 0.85709 0.85650 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.61 10.28 37.16 0.38 -0.23 16 2 C 0.05 0.30 5.46 37.16 0.20 0.50 16 3 O -0.32 -2.77 10.14 -19.43 -0.20 -2.97 16 4 C 0.12 1.11 6.69 -39.21 -0.26 0.85 16 5 C -0.15 -1.31 9.99 -39.43 -0.39 -1.70 16 6 C -0.08 -0.63 9.69 -39.61 -0.38 -1.01 16 7 C -0.12 -1.01 5.13 -104.60 -0.54 -1.55 16 8 C -0.06 -0.56 4.63 -27.88 -0.13 -0.69 16 9 C -0.14 -1.20 5.68 -27.88 -0.16 -1.36 16 10 C 0.51 6.58 7.79 -10.98 -0.09 6.50 16 11 O -0.54 -9.22 15.64 5.56 0.09 -9.13 16 12 N -0.72 -9.11 4.99 -53.81 -0.27 -9.38 16 13 C 0.13 2.12 2.62 -67.93 -0.18 1.95 16 14 H 0.09 1.64 7.58 -51.93 -0.39 1.25 16 15 C -0.16 -2.51 9.00 37.16 0.33 -2.18 16 16 C 0.17 3.15 2.93 -67.93 -0.20 2.96 16 17 H 0.06 1.16 8.08 -51.93 -0.42 0.74 16 18 C -0.17 -2.67 9.01 37.16 0.33 -2.33 16 19 N -0.74 -17.10 4.84 -53.43 -0.26 -17.36 16 20 C -0.25 -6.79 10.41 -15.06 -0.16 -6.94 16 21 H 0.09 2.67 8.06 -52.49 -0.42 2.25 16 22 C 0.01 0.22 5.50 -17.43 -0.10 0.12 16 23 N -0.93 -29.01 13.97 55.49 0.78 -28.23 16 24 Si 0.88 21.99 27.74 -169.99 -4.71 17.28 16 25 H -0.28 -7.06 7.11 56.52 0.40 -6.66 16 26 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 27 H -0.28 -6.47 6.52 56.52 0.37 -6.11 16 28 C -0.08 -0.62 9.69 -39.60 -0.38 -1.00 16 29 C -0.21 -1.67 9.04 -39.43 -0.36 -2.02 16 30 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 31 H 0.08 0.18 8.14 -51.92 -0.42 -0.25 16 32 H 0.07 0.29 8.14 -51.93 -0.42 -0.14 16 33 H 0.06 0.29 7.66 -51.93 -0.40 -0.11 16 34 H 0.06 0.29 7.66 -51.93 -0.40 -0.10 16 35 H 0.13 0.97 8.06 -52.49 -0.42 0.55 16 36 H 0.13 0.90 8.06 -52.49 -0.42 0.48 16 37 H 0.08 0.81 8.04 -51.93 -0.42 0.40 16 38 H 0.08 0.78 8.04 -51.93 -0.42 0.37 16 39 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 40 H 0.09 0.71 8.14 -51.93 -0.42 0.28 16 41 H 0.40 4.05 6.58 -40.82 -0.27 3.78 16 42 H 0.06 0.85 6.57 -51.93 -0.34 0.51 16 43 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 44 H 0.07 1.14 6.29 -51.93 -0.33 0.81 16 45 H 0.04 0.44 6.29 -51.93 -0.33 0.12 16 46 H 0.05 0.82 6.57 -51.92 -0.34 0.48 16 47 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 48 H 0.36 8.27 3.63 -40.82 -0.15 8.12 16 49 H 0.26 7.72 8.31 -40.82 -0.34 7.38 16 50 H 0.12 0.84 8.06 -52.49 -0.42 0.41 16 51 H 0.13 0.76 6.30 -52.49 -0.33 0.43 16 LS Contribution 408.42 15.07 6.15 6.15 Total: -1.00 -33.69 408.42 -8.83 -42.53 By element: Atomic # 1 Polarization: 17.60 SS G_CDS: -8.35 Total: 9.26 kcal Atomic # 6 Polarization: -6.07 SS G_CDS: -2.07 Total: -8.14 kcal Atomic # 7 Polarization: -55.22 SS G_CDS: 0.25 Total: -54.97 kcal Atomic # 8 Polarization: -11.99 SS G_CDS: -0.11 Total: -12.10 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -4.71 Total: 17.28 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -33.69 -8.83 -42.53 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570614001.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.003 kcal (2) G-P(sol) polarization free energy of solvation -33.693 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.696 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.833 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.526 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.530 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds