Wall clock time and date at job start Tue Mar 31 2020 19:21:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42900 * 109.47129 * 2 1 4 4 C 1.35900 * 116.99976 * 179.97438 * 3 2 1 5 5 C 1.38735 * 120.05574 * 180.02562 * 4 3 2 6 6 C 1.38145 * 119.94351 * 180.02562 * 5 4 3 7 7 C 1.38266 * 120.05487 * 0.02562 * 6 5 4 8 8 C 1.50696 * 119.94227 * 179.97438 * 7 6 5 9 9 C 1.53003 * 109.46781 * 90.00409 * 8 7 6 10 10 C 1.50704 * 109.47208 * 179.97438 * 9 8 7 11 11 O 1.21278 * 119.99731 * 0.02562 * 10 9 8 12 12 N 1.34776 * 120.00418 * 180.02562 * 10 9 8 13 13 C 1.46500 * 120.00386 * 179.97438 * 12 10 9 14 14 H 1.08998 * 109.46878 * 35.00073 * 13 12 10 15 15 C 1.53001 * 109.47290 * 275.00236 * 13 12 10 16 16 C 1.52999 * 109.47037 * 154.99951 * 13 12 10 17 17 H 1.09004 * 109.47434 * 295.00363 * 16 13 12 18 18 C 1.52997 * 109.47114 * 55.00170 * 16 13 12 19 19 N 1.46498 * 109.46963 * 174.99963 * 16 13 12 20 20 C 1.36943 * 119.99752 * 154.72381 * 19 16 13 21 21 H 1.08002 * 119.99793 * 0.27665 * 20 19 16 22 22 C 1.38811 * 120.00012 * 180.27737 * 20 19 16 23 23 N 1.31611 * 120.00081 * 180.02562 * 22 20 19 24 24 Si 1.86800 * 119.99814 * 0.02562 * 22 20 19 25 25 H 1.48501 * 109.47483 * 90.00178 * 24 22 20 26 26 H 1.48498 * 109.47011 * 210.00042 * 24 22 20 27 27 H 1.48502 * 109.47495 * 329.99664 * 24 22 20 28 28 C 1.38269 * 120.11573 * 0.25566 * 7 6 5 29 29 C 1.38144 * 120.04981 * 359.45029 * 28 7 6 30 30 H 1.09002 * 109.47144 * 59.99835 * 1 2 3 31 31 H 1.09007 * 109.47255 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.47369 * 299.99992 * 1 2 3 33 33 H 1.09002 * 109.47369 * 240.00008 * 2 1 3 34 34 H 1.09002 * 109.47144 * 120.00165 * 2 1 3 35 35 H 1.07994 * 120.02391 * 0.02562 * 5 4 3 36 36 H 1.07993 * 119.97099 * 180.02562 * 6 5 4 37 37 H 1.09001 * 109.47811 * 330.00542 * 8 7 6 38 38 H 1.09001 * 109.47546 * 210.00158 * 8 7 6 39 39 H 1.08999 * 109.47030 * 60.00292 * 9 8 7 40 40 H 1.08991 * 109.47608 * 299.99968 * 9 8 7 41 41 H 0.96999 * 119.99467 * 0.02562 * 12 10 9 42 42 H 1.09000 * 109.47005 * 300.00291 * 15 13 12 43 43 H 1.09004 * 109.47050 * 59.99647 * 15 13 12 44 44 H 1.08998 * 109.47150 * 179.97438 * 15 13 12 45 45 H 1.09003 * 109.47189 * 300.00067 * 18 16 13 46 46 H 1.09009 * 109.47238 * 59.99946 * 18 16 13 47 47 H 1.08997 * 109.47293 * 179.97438 * 18 16 13 48 48 H 0.97001 * 120.00384 * 335.00737 * 19 16 13 49 49 H 0.97008 * 120.00329 * 179.97438 * 23 22 20 50 50 H 1.07997 * 119.97454 * 179.69968 * 28 7 6 51 51 H 1.08000 * 120.03145 * 180.25267 * 29 28 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3536 1.5253 0.0005 5 6 3.8851 2.8068 0.0011 6 6 5.2550 2.9851 0.0011 7 6 6.0962 1.8878 0.0000 8 6 7.5901 2.0852 -0.0005 9 6 8.0964 2.1510 1.4418 10 6 9.5905 2.3478 1.4414 11 8 10.1912 2.4281 0.3909 12 7 10.2592 2.4347 2.6083 13 6 11.7117 2.6255 2.6079 14 1 11.9948 3.2579 1.7665 15 6 12.4045 1.2672 2.4807 16 6 12.1385 3.2953 3.9156 17 1 11.7158 4.2988 3.9647 18 6 11.6320 2.4701 5.1002 19 7 13.6002 3.3779 3.9675 20 6 14.2048 4.3459 4.7243 21 1 13.6040 5.0455 5.2865 22 6 15.5898 4.4278 4.7690 23 7 16.1709 5.3578 5.4968 24 14 16.6288 3.2182 3.7961 25 1 16.8882 3.7666 2.4406 26 1 17.9197 2.9991 4.4967 27 1 15.9047 1.9271 3.6775 28 6 5.5690 0.6095 -0.0064 29 6 4.1998 0.4259 -0.0003 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3634 0.5138 0.8900 33 1 1.8934 -0.5138 -0.8900 34 1 1.8933 -0.5139 0.8900 35 1 3.2285 3.6642 0.0015 36 1 5.6692 3.9825 0.0020 37 1 7.8336 3.0155 -0.5138 38 1 8.0668 1.2509 -0.5151 39 1 7.8530 1.2207 1.9551 40 1 7.6198 2.9853 1.9565 41 1 9.7787 2.3701 3.4485 42 1 12.1213 0.6348 3.3221 43 1 12.1004 0.7900 1.5491 44 1 13.4852 1.4092 2.4799 45 1 10.5444 2.4086 5.0616 46 1 12.0546 1.4665 5.0512 47 1 11.9364 2.9470 6.0318 48 1 14.1398 2.7496 3.4625 49 1 17.1387 5.4148 5.5283 50 1 6.2281 -0.2460 -0.0121 51 1 3.7884 -0.5727 -0.0012 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001570614001.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:21:48 Heat of formation + Delta-G solvation = -72.572424 kcal Electronic energy + Delta-G solvation = -27673.937996 eV Core-core repulsion = 23765.596291 eV Total energy + Delta-G solvation = -3908.341705 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.21717 -40.86875 -38.92943 -38.41990 -35.63709 -34.60625 -33.68336 -32.60694 -31.82182 -31.44841 -30.11126 -29.50259 -26.16074 -25.75216 -24.90075 -24.21883 -22.92003 -21.89697 -21.20434 -20.74892 -19.91328 -19.20923 -18.20391 -17.10871 -17.02384 -16.93316 -16.67302 -16.30003 -16.19054 -15.73647 -15.60175 -15.27555 -15.07601 -14.60125 -14.50133 -14.39741 -14.26867 -14.09141 -13.93130 -13.55341 -13.43221 -13.32177 -13.19048 -13.09948 -12.87288 -12.67160 -12.60686 -12.51207 -12.27417 -12.16082 -11.99977 -11.92793 -11.78380 -11.59056 -11.57537 -11.54936 -11.00180 -10.82405 -10.04933 -9.92817 -9.34610 -9.01451 -8.02311 -5.35773 0.41542 0.45260 1.36839 1.40198 1.46468 1.72768 2.21708 2.29577 2.47825 2.81622 3.29535 3.63755 3.72358 3.84722 3.87032 3.97840 4.04795 4.06113 4.09169 4.13354 4.27315 4.29561 4.35366 4.39329 4.47168 4.52074 4.58615 4.65882 4.66263 4.75057 4.85696 4.92360 4.93923 4.94275 4.97286 5.03617 5.15259 5.15797 5.20848 5.24561 5.25420 5.36808 5.43561 5.56202 5.61750 5.74320 5.78179 5.87147 6.21375 6.49266 6.64440 7.07518 7.34854 7.83204 8.01091 9.18973 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.031866 B = 0.001637 C = 0.001624 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 878.464372 B =17096.395354 C =17242.113943 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.046 3.954 3 O -0.336 6.336 4 C 0.110 3.890 5 C -0.164 4.164 6 C -0.080 4.080 7 C -0.122 4.122 8 C -0.055 4.055 9 C -0.124 4.124 10 C 0.508 3.492 11 O -0.587 6.587 12 N -0.710 5.710 13 C 0.144 3.856 14 H 0.060 0.940 15 C -0.155 4.155 16 C 0.168 3.832 17 H 0.047 0.953 18 C -0.159 4.159 19 N -0.749 5.749 20 C -0.228 4.228 21 H 0.061 0.939 22 C -0.060 4.060 23 N -0.982 5.982 24 Si 0.945 3.055 25 H -0.283 1.283 26 H -0.295 1.295 27 H -0.250 1.250 28 C -0.079 4.079 29 C -0.210 4.210 30 H 0.061 0.939 31 H 0.098 0.902 32 H 0.062 0.938 33 H 0.069 0.931 34 H 0.070 0.930 35 H 0.134 0.866 36 H 0.141 0.859 37 H 0.067 0.933 38 H 0.070 0.930 39 H 0.118 0.882 40 H 0.114 0.886 41 H 0.414 0.586 42 H 0.077 0.923 43 H 0.056 0.944 44 H 0.051 0.949 45 H 0.081 0.919 46 H 0.058 0.942 47 H 0.038 0.962 48 H 0.366 0.634 49 H 0.257 0.743 50 H 0.140 0.860 51 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -32.732 -15.322 -10.939 37.760 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.029 4.029 3 O -0.251 6.251 4 C 0.065 3.935 5 C -0.182 4.182 6 C -0.097 4.097 7 C -0.123 4.123 8 C -0.092 4.092 9 C -0.163 4.163 10 C 0.297 3.703 11 O -0.467 6.467 12 N -0.364 5.364 13 C 0.038 3.962 14 H 0.079 0.921 15 C -0.214 4.214 16 C 0.059 3.941 17 H 0.065 0.935 18 C -0.219 4.219 19 N -0.394 5.394 20 C -0.359 4.359 21 H 0.079 0.921 22 C -0.252 4.252 23 N -0.633 5.633 24 Si 0.773 3.227 25 H -0.209 1.209 26 H -0.221 1.221 27 H -0.174 1.174 28 C -0.097 4.097 29 C -0.228 4.228 30 H 0.080 0.920 31 H 0.117 0.883 32 H 0.081 0.919 33 H 0.087 0.913 34 H 0.089 0.911 35 H 0.152 0.848 36 H 0.158 0.842 37 H 0.086 0.914 38 H 0.089 0.911 39 H 0.136 0.864 40 H 0.132 0.868 41 H 0.253 0.747 42 H 0.096 0.904 43 H 0.075 0.925 44 H 0.070 0.930 45 H 0.099 0.901 46 H 0.077 0.923 47 H 0.057 0.943 48 H 0.201 0.799 49 H 0.066 0.934 50 H 0.158 0.842 51 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -32.463 -14.954 -11.529 37.555 hybrid contribution 1.183 -0.294 0.022 1.219 sum -31.280 -15.248 -11.508 36.652 Atomic orbital electron populations 1.21810 0.91722 1.04105 1.03115 1.23029 0.96748 0.80877 1.02202 1.86052 1.19098 1.31185 1.88728 1.19226 0.82596 0.94681 0.96978 1.20616 0.95610 0.95206 1.06795 1.21077 0.91918 0.99544 0.97208 1.19813 0.95233 0.93433 1.03787 1.20156 0.90271 1.03306 0.95515 1.21680 0.88841 1.06423 0.99402 1.21386 0.91219 0.74747 0.82962 1.90694 1.71416 1.51764 1.32853 1.46064 1.07267 1.73546 1.09493 1.20893 0.80766 0.96813 0.97710 0.92143 1.22109 1.00006 0.96835 1.02426 1.20520 0.83238 0.97389 0.92918 0.93461 1.22341 1.00747 1.00391 0.98391 1.42814 1.02273 1.37101 1.57229 1.19024 0.90338 1.06744 1.19749 0.92143 1.25407 0.97735 1.00543 1.01490 1.69865 1.09434 1.37659 1.46317 0.85561 0.78523 0.80306 0.78327 1.20897 1.22123 1.17449 1.21089 0.94498 0.97201 0.96890 1.21435 0.94278 0.98593 1.08533 0.91970 0.88302 0.91910 0.91261 0.91128 0.84803 0.84155 0.91440 0.91099 0.86411 0.86825 0.74699 0.90414 0.92507 0.93005 0.90089 0.92257 0.94285 0.79900 0.93400 0.84206 0.83875 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.98 10.28 71.98 0.74 -0.24 16 2 C 0.05 0.44 5.46 71.98 0.39 0.83 16 3 O -0.34 -5.52 10.14 -92.43 -0.94 -6.45 16 4 C 0.11 1.85 6.69 22.51 0.15 2.00 16 5 C -0.16 -2.70 9.99 22.37 0.22 -2.47 16 6 C -0.08 -1.22 9.69 22.25 0.22 -1.01 16 7 C -0.12 -1.88 5.13 -19.85 -0.10 -1.98 16 8 C -0.05 -0.91 4.63 29.85 0.14 -0.78 16 9 C -0.12 -1.82 5.68 29.85 0.17 -1.65 16 10 C 0.51 12.04 7.79 87.66 0.68 12.72 16 11 O -0.59 -19.39 15.64 -3.02 -0.05 -19.43 16 12 N -0.71 -16.05 4.99 -442.54 -2.21 -18.26 16 13 C 0.14 4.42 2.62 44.99 0.12 4.53 16 14 H 0.06 2.22 7.58 -2.39 -0.02 2.20 16 15 C -0.16 -4.49 9.00 71.98 0.65 -3.84 16 16 C 0.17 5.93 2.93 44.99 0.13 6.06 16 17 H 0.05 1.80 8.08 -2.39 -0.02 1.78 16 18 C -0.16 -4.63 9.01 71.98 0.65 -3.98 16 19 N -0.75 -33.99 4.84 -322.94 -1.56 -35.55 16 20 C -0.23 -12.76 10.41 84.03 0.87 -11.88 16 21 H 0.06 3.69 8.06 -2.91 -0.02 3.67 16 22 C -0.06 -3.53 5.50 84.86 0.47 -3.06 16 23 N -0.98 -62.80 13.97 21.65 0.30 -62.50 16 24 Si 0.95 45.53 27.74 68.60 1.90 47.43 16 25 H -0.28 -13.51 7.11 99.48 0.71 -12.81 16 26 H -0.29 -14.33 7.11 99.48 0.71 -13.62 16 27 H -0.25 -10.79 6.52 99.48 0.65 -10.14 16 28 C -0.08 -1.10 9.69 22.25 0.22 -0.89 16 29 C -0.21 -2.95 9.04 22.37 0.20 -2.74 16 30 H 0.06 0.46 8.14 -2.39 -0.02 0.44 16 31 H 0.10 0.23 8.14 -2.38 -0.02 0.21 16 32 H 0.06 0.46 8.14 -2.39 -0.02 0.45 16 33 H 0.07 0.53 7.66 -2.39 -0.02 0.51 16 34 H 0.07 0.53 7.66 -2.39 -0.02 0.51 16 35 H 0.13 1.95 8.06 -2.91 -0.02 1.93 16 36 H 0.14 1.76 8.06 -2.91 -0.02 1.74 16 37 H 0.07 1.31 8.04 -2.39 -0.02 1.29 16 38 H 0.07 1.30 8.04 -2.39 -0.02 1.28 16 39 H 0.12 1.20 8.14 -2.39 -0.02 1.18 16 40 H 0.11 1.29 8.14 -2.39 -0.02 1.27 16 41 H 0.41 6.75 6.58 -92.71 -0.61 6.14 16 42 H 0.08 1.95 6.57 -2.39 -0.02 1.93 16 43 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 44 H 0.05 1.65 6.29 -2.39 -0.02 1.64 16 45 H 0.08 1.62 6.29 -2.39 -0.02 1.61 16 46 H 0.06 1.66 6.57 -2.38 -0.02 1.64 16 47 H 0.04 1.32 8.14 -2.39 -0.02 1.31 16 48 H 0.37 16.16 3.63 -92.71 -0.34 15.82 16 49 H 0.26 15.72 8.31 -92.70 -0.77 14.95 16 50 H 0.14 1.47 8.06 -2.91 -0.02 1.45 16 51 H 0.14 1.39 6.30 -2.91 -0.02 1.37 16 Total: -1.00 -75.10 408.42 3.29 -71.81 By element: Atomic # 1 Polarization: 31.42 SS G_CDS: -0.08 Total: 31.34 kcal Atomic # 6 Polarization: -14.30 SS G_CDS: 5.92 Total: -8.38 kcal Atomic # 7 Polarization: -112.85 SS G_CDS: -3.47 Total: -116.31 kcal Atomic # 8 Polarization: -24.90 SS G_CDS: -0.98 Total: -25.89 kcal Atomic # 14 Polarization: 45.53 SS G_CDS: 1.90 Total: 47.43 kcal Total: -75.10 3.29 -71.81 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570614001.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.764 kcal (2) G-P(sol) polarization free energy of solvation -75.101 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.865 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.293 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.808 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.572 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds