Wall clock time and date at job start Tue Mar 31 2020 19:25:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42900 * 109.47335 * 2 1 4 4 C 1.35703 * 117.00268 * 179.97438 * 3 2 1 5 5 C 1.38998 * 119.91282 * 359.72853 * 4 3 2 6 6 C 1.37702 * 120.09162 * 179.72173 * 5 4 3 7 7 C 1.39741 * 119.90378 * 0.56908 * 6 5 4 8 8 C 1.47608 * 120.08113 * 179.67851 * 7 6 5 9 9 O 1.21583 * 119.99555 * 180.02562 * 8 7 6 10 10 N 1.34775 * 120.00314 * 0.02581 * 8 7 6 11 11 C 1.46493 * 119.99808 * 179.97438 * 10 8 7 12 12 C 1.53001 * 109.46964 * 180.02562 * 11 10 8 13 13 C 1.53002 * 109.47240 * 180.02562 * 12 11 10 14 14 N 1.46507 * 109.47036 * 179.97438 * 13 12 11 15 15 C 1.36933 * 120.00059 * 89.99867 * 14 13 12 16 16 H 1.07996 * 120.00035 * 217.14354 * 15 14 13 17 17 C 1.38818 * 119.99853 * 37.14427 * 15 14 13 18 18 N 1.31617 * 120.00401 * 21.26933 * 17 15 14 19 19 Si 1.86805 * 119.99553 * 201.27333 * 17 15 14 20 20 H 1.48492 * 109.47390 * 0.02562 * 19 17 15 21 21 H 1.48510 * 109.46948 * 120.00111 * 19 17 15 22 22 H 1.48498 * 109.46858 * 239.99315 * 19 17 15 23 23 C 1.46497 * 119.99800 * 269.99364 * 14 13 12 24 24 C 1.53005 * 109.46657 * 114.90696 * 23 14 13 25 25 C 1.52998 * 109.47356 * 234.90474 * 23 14 13 26 26 C 1.39730 * 119.82755 * 359.70462 * 7 6 5 27 27 C 1.37704 * 119.91144 * 359.97438 * 26 7 6 28 28 H 1.09000 * 109.47234 * 59.99892 * 1 2 3 29 29 H 1.09000 * 109.46885 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.47261 * 299.99588 * 1 2 3 31 31 H 1.09004 * 109.47009 * 239.99928 * 2 1 3 32 32 H 1.09000 * 109.47234 * 120.00108 * 2 1 3 33 33 H 1.08007 * 119.95378 * 359.97438 * 5 4 3 34 34 H 1.07999 * 120.04787 * 180.27364 * 6 5 4 35 35 H 0.96998 * 119.99812 * 359.97438 * 10 8 7 36 36 H 1.09002 * 109.47630 * 299.99828 * 11 10 8 37 37 H 1.09003 * 109.47197 * 60.00699 * 11 10 8 38 38 H 1.09000 * 109.47217 * 300.00068 * 12 11 10 39 39 H 1.09000 * 109.47520 * 60.00062 * 12 11 10 40 40 H 1.09000 * 109.46822 * 300.00005 * 13 12 11 41 41 H 1.08994 * 109.47327 * 60.00143 * 13 12 11 42 42 H 0.97000 * 120.00187 * 180.02562 * 18 17 15 43 43 H 1.08998 * 109.47198 * 354.90968 * 23 14 13 44 44 H 1.08996 * 109.47225 * 63.31143 * 24 23 14 45 45 H 1.09004 * 109.46798 * 183.31451 * 24 23 14 46 46 H 1.08997 * 109.47002 * 303.30502 * 24 23 14 47 47 H 1.08991 * 109.46847 * 61.61871 * 25 23 14 48 48 H 1.08994 * 109.46959 * 181.62375 * 25 23 14 49 49 H 1.09003 * 109.46690 * 301.62473 * 25 23 14 50 50 H 1.08002 * 120.04366 * 179.97438 * 26 7 6 51 51 H 1.07999 * 119.95437 * 180.02562 * 27 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.3517 1.5251 0.0005 5 6 4.1968 0.4215 0.0068 6 6 5.5625 0.5976 0.0016 7 6 6.0985 1.8881 0.0020 8 6 7.5618 2.0815 0.0036 9 8 8.0265 3.2050 0.0045 10 7 8.3828 1.0127 0.0041 11 6 9.8351 1.2047 0.0051 12 6 10.5297 -0.1586 0.0048 13 6 12.0466 0.0419 0.0065 14 7 12.7117 -1.2635 0.0069 15 6 13.0238 -1.8733 -1.1788 16 1 12.9363 -2.9455 -1.2741 17 6 13.4525 -1.1132 -2.2584 18 7 13.9573 0.0860 -2.0599 19 14 13.3128 -1.7924 -3.9930 20 1 12.7155 -3.1511 -3.9460 21 1 12.4479 -0.8999 -4.8059 22 1 14.6633 -1.8656 -4.6061 23 6 13.0429 -1.9164 1.2758 24 6 12.2316 -3.2064 1.4125 25 6 14.5363 -2.2478 1.3043 26 6 5.2456 2.9950 0.0015 27 6 3.8810 2.8103 0.0000 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 1.8933 -0.5139 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 3.7816 -0.5756 0.0116 34 1 6.2184 -0.2604 0.0019 35 1 8.0121 0.1163 0.0038 36 1 10.1287 1.7617 -0.8847 37 1 10.1274 1.7615 0.8954 38 1 10.2363 -0.7161 0.8943 39 1 10.2375 -0.7152 -0.8856 40 1 12.3403 0.5995 -0.8828 41 1 12.3386 0.5982 0.8972 42 1 14.2566 0.6173 -2.8143 43 1 12.8034 -1.2472 2.1021 44 1 12.5140 -3.8991 0.6198 45 1 12.4338 -3.6617 2.3821 46 1 11.1689 -2.9773 1.3334 47 1 15.1143 -1.3263 1.2357 48 1 14.7772 -2.7594 2.2360 49 1 14.7812 -2.8939 0.4612 50 1 5.6561 3.9939 0.0023 51 1 3.2211 3.6653 -0.0008 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001649440068.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:25:24 Heat of formation + Delta-G solvation = -44.178704 kcal Electronic energy + Delta-G solvation = -28099.709056 eV Core-core repulsion = 24192.598595 eV Total energy + Delta-G solvation = -3907.110461 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -40.66384 -39.49377 -37.40694 -36.74103 -35.00428 -32.68540 -32.39467 -31.63974 -31.16482 -30.04213 -28.60337 -26.18748 -25.49697 -24.46848 -23.73906 -22.94059 -21.87214 -20.88751 -20.22535 -19.50947 -18.77379 -17.52886 -16.58687 -16.56263 -16.17139 -15.42978 -15.32592 -15.05290 -14.86057 -14.30523 -14.08741 -14.00353 -13.95095 -13.73210 -13.47911 -13.32995 -13.09710 -12.84349 -12.59937 -12.40557 -12.26161 -12.11027 -11.70589 -11.49052 -11.42631 -11.30254 -11.14738 -11.11744 -10.95893 -10.76399 -10.63240 -10.40893 -10.20120 -9.95605 -9.79527 -9.56641 -9.48460 -9.37587 -8.88436 -8.48753 -8.46333 -6.54222 -5.76105 -3.33926 0.71646 1.04096 2.73826 2.83588 3.32614 3.36591 3.44693 3.45756 3.72357 4.33684 4.44055 4.48285 4.48575 4.59258 4.75092 4.76250 4.91852 5.03381 5.16108 5.24215 5.30118 5.37031 5.39023 5.54547 5.64417 5.68705 5.78073 5.86471 5.94989 5.95425 6.05906 6.14239 6.19498 6.32293 6.35974 6.42165 6.44547 6.45241 6.69495 6.73483 6.75989 6.79662 6.82329 6.98970 7.13002 7.22085 7.34814 7.67110 7.70945 7.85953 8.35180 8.55054 9.22098 9.85089 10.43643 11.23571 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.013609 B = 0.002109 C = 0.002095 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2057.022445 B =13274.135480 C =13359.637362 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.052 3.948 3 O -0.314 6.314 4 C 0.151 3.849 5 C -0.218 4.218 6 C -0.044 4.044 7 C -0.169 4.169 8 C 0.555 3.445 9 O -0.543 6.543 10 N -0.721 5.721 11 C 0.121 3.879 12 C -0.145 4.145 13 C 0.150 3.850 14 N -0.579 5.579 15 C -0.251 4.251 16 H 0.060 0.940 17 C 0.011 3.989 18 N -0.886 5.886 19 Si 0.891 3.109 20 H -0.277 1.277 21 H -0.288 1.288 22 H -0.290 1.290 23 C 0.161 3.839 24 C -0.154 4.154 25 C -0.145 4.145 26 C -0.020 4.020 27 C -0.162 4.162 28 H 0.066 0.934 29 H 0.079 0.921 30 H 0.066 0.934 31 H 0.065 0.935 32 H 0.064 0.936 33 H 0.133 0.867 34 H 0.131 0.869 35 H 0.397 0.603 36 H 0.068 0.932 37 H 0.063 0.937 38 H 0.048 0.952 39 H 0.064 0.936 40 H 0.097 0.903 41 H 0.024 0.976 42 H 0.253 0.747 43 H 0.044 0.956 44 H 0.051 0.949 45 H 0.034 0.966 46 H 0.043 0.957 47 H 0.048 0.952 48 H 0.029 0.971 49 H 0.057 0.943 50 H 0.144 0.856 51 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.240 -0.712 6.108 24.040 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.023 4.023 3 O -0.227 6.227 4 C 0.105 3.895 5 C -0.236 4.236 6 C -0.063 4.063 7 C -0.173 4.173 8 C 0.342 3.658 9 O -0.422 6.422 10 N -0.372 5.372 11 C -0.003 4.003 12 C -0.186 4.186 13 C 0.023 3.977 14 N -0.299 5.299 15 C -0.381 4.381 16 H 0.077 0.923 17 C -0.189 4.189 18 N -0.528 5.528 19 Si 0.721 3.279 20 H -0.202 1.202 21 H -0.215 1.215 22 H -0.217 1.217 23 C 0.055 3.945 24 C -0.213 4.213 25 C -0.204 4.204 26 C -0.039 4.039 27 C -0.180 4.180 28 H 0.086 0.914 29 H 0.098 0.902 30 H 0.086 0.914 31 H 0.083 0.917 32 H 0.083 0.917 33 H 0.151 0.849 34 H 0.149 0.851 35 H 0.231 0.769 36 H 0.086 0.914 37 H 0.081 0.919 38 H 0.067 0.933 39 H 0.083 0.917 40 H 0.115 0.885 41 H 0.043 0.957 42 H 0.064 0.936 43 H 0.063 0.937 44 H 0.070 0.930 45 H 0.053 0.947 46 H 0.062 0.938 47 H 0.067 0.933 48 H 0.048 0.952 49 H 0.076 0.924 50 H 0.162 0.838 51 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -22.934 0.332 5.999 23.708 hybrid contribution -0.175 -1.116 -1.019 1.521 sum -23.109 -0.784 4.980 23.653 Atomic orbital electron populations 1.21784 0.92555 1.03019 1.03609 1.22860 0.96049 0.81692 1.01747 1.86040 1.19010 1.29726 1.87933 1.19250 0.82283 0.94208 0.93724 1.21167 0.94015 0.98305 1.10144 1.21141 0.94679 0.96324 0.94140 1.19963 0.93547 0.94033 1.09721 1.18160 0.86031 0.84914 0.76651 1.90772 1.77478 1.23605 1.50359 1.46099 1.07856 1.08668 1.74588 1.21502 0.77232 0.99431 1.02089 1.22499 1.00759 0.93954 1.01369 1.20819 0.86547 0.88434 1.01897 1.43862 1.65640 1.19790 1.00623 1.18927 1.38838 0.92040 0.88257 0.92274 1.25160 0.97615 0.97217 0.98926 1.69987 1.41149 1.11876 1.29811 0.86416 0.77422 0.78623 0.85448 1.20215 1.21508 1.21746 1.20415 0.92554 0.92601 0.88971 1.22205 1.00011 0.99781 0.99303 1.22033 0.98079 1.01085 0.99213 1.21106 0.91430 0.99305 0.92097 1.20409 0.95020 0.94915 1.07681 0.91442 0.90219 0.91450 0.91706 0.91725 0.84909 0.85150 0.76857 0.91358 0.91864 0.93287 0.91695 0.88511 0.95718 0.93648 0.93725 0.92984 0.94658 0.93812 0.93329 0.95228 0.92378 0.83845 0.84537 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.67 10.28 37.16 0.38 -0.29 16 2 C 0.05 0.31 5.45 37.16 0.20 0.51 16 3 O -0.31 -2.86 10.12 -18.81 -0.19 -3.05 16 4 C 0.15 1.50 6.70 -39.02 -0.26 1.24 16 5 C -0.22 -1.98 9.01 -39.50 -0.36 -2.33 16 6 C -0.04 -0.44 9.53 -39.22 -0.37 -0.82 16 7 C -0.17 -2.12 5.88 -104.96 -0.62 -2.74 16 8 C 0.56 8.61 7.76 -12.44 -0.10 8.51 16 9 O -0.54 -10.36 16.34 5.29 0.09 -10.27 16 10 N -0.72 -10.40 5.51 -61.33 -0.34 -10.74 16 11 C 0.12 2.03 5.67 -4.05 -0.02 2.01 16 12 C -0.15 -2.63 5.65 -26.73 -0.15 -2.78 16 13 C 0.15 3.32 5.28 -4.04 -0.02 3.30 16 14 N -0.58 -13.53 2.37 -165.66 -0.39 -13.92 16 15 C -0.25 -6.48 8.04 -15.06 -0.12 -6.60 16 16 H 0.06 1.55 7.14 -52.49 -0.37 1.18 16 17 C 0.01 0.29 4.96 -17.43 -0.09 0.21 16 18 N -0.89 -24.85 11.43 55.49 0.63 -24.21 16 19 Si 0.89 21.16 29.60 -169.99 -5.03 16.12 16 20 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 21 H -0.29 -6.93 7.11 56.52 0.40 -6.52 16 22 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 23 C 0.16 3.28 3.37 -67.93 -0.23 3.05 16 24 C -0.15 -2.75 9.19 37.16 0.34 -2.41 16 25 C -0.15 -2.91 9.11 37.16 0.34 -2.57 16 26 C -0.02 -0.24 9.58 -39.22 -0.38 -0.61 16 27 C -0.16 -1.63 9.97 -39.50 -0.39 -2.03 16 28 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 29 H 0.08 0.22 8.14 -51.93 -0.42 -0.20 16 30 H 0.07 0.31 8.14 -51.93 -0.42 -0.12 16 31 H 0.06 0.34 7.67 -51.93 -0.40 -0.06 16 32 H 0.06 0.33 7.64 -51.93 -0.40 -0.07 16 33 H 0.13 0.89 6.28 -52.48 -0.33 0.56 16 34 H 0.13 1.06 6.39 -52.49 -0.34 0.73 16 35 H 0.40 4.66 6.49 -40.82 -0.27 4.39 16 36 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 37 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 38 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 39 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 40 H 0.10 2.47 5.48 -51.93 -0.28 2.18 16 41 H 0.02 0.53 7.88 -51.93 -0.41 0.12 16 42 H 0.25 6.93 8.31 -40.82 -0.34 6.59 16 43 H 0.04 0.86 7.77 -51.93 -0.40 0.46 16 44 H 0.05 0.99 7.32 -51.93 -0.38 0.61 16 45 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 46 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 47 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 48 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 49 H 0.06 1.25 7.50 -51.93 -0.39 0.86 16 50 H 0.14 1.64 7.64 -52.49 -0.40 1.23 16 51 H 0.14 1.14 8.06 -52.49 -0.42 0.71 16 LS Contribution 413.27 15.07 6.23 6.23 Total: -1.00 -31.00 413.27 -9.42 -40.42 By element: Atomic # 1 Polarization: 12.35 SS G_CDS: -8.58 Total: 3.77 kcal Atomic # 6 Polarization: -2.51 SS G_CDS: -1.84 Total: -4.35 kcal Atomic # 7 Polarization: -48.78 SS G_CDS: -0.10 Total: -48.88 kcal Atomic # 8 Polarization: -13.22 SS G_CDS: -0.10 Total: -13.32 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.03 Total: 16.12 kcal Total LS contribution 6.23 Total: 6.23 kcal Total: -31.00 -9.42 -40.42 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001649440068.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.755 kcal (2) G-P(sol) polarization free energy of solvation -31.003 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.758 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.420 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.423 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.179 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds