Wall clock time and date at job start Tue Mar 31 2020 19:25:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42900 * 109.47335 * 2 1 4 4 C 1.35703 * 117.00268 * 179.97438 * 3 2 1 5 5 C 1.38998 * 119.91282 * 359.72853 * 4 3 2 6 6 C 1.37702 * 120.09162 * 179.72173 * 5 4 3 7 7 C 1.39741 * 119.90378 * 0.56908 * 6 5 4 8 8 C 1.47608 * 120.08113 * 179.67851 * 7 6 5 9 9 O 1.21583 * 119.99555 * 180.02562 * 8 7 6 10 10 N 1.34775 * 120.00314 * 0.02581 * 8 7 6 11 11 C 1.46493 * 119.99808 * 179.97438 * 10 8 7 12 12 C 1.53001 * 109.46964 * 180.02562 * 11 10 8 13 13 C 1.53002 * 109.47240 * 180.02562 * 12 11 10 14 14 N 1.46507 * 109.47036 * 179.97438 * 13 12 11 15 15 C 1.36933 * 120.00059 * 89.99867 * 14 13 12 16 16 H 1.07996 * 120.00035 * 217.14354 * 15 14 13 17 17 C 1.38818 * 119.99853 * 37.14427 * 15 14 13 18 18 N 1.31617 * 120.00401 * 21.26933 * 17 15 14 19 19 Si 1.86805 * 119.99553 * 201.27333 * 17 15 14 20 20 H 1.48492 * 109.47390 * 0.02562 * 19 17 15 21 21 H 1.48510 * 109.46948 * 120.00111 * 19 17 15 22 22 H 1.48498 * 109.46858 * 239.99315 * 19 17 15 23 23 C 1.46497 * 119.99800 * 269.99364 * 14 13 12 24 24 C 1.53005 * 109.46657 * 114.90696 * 23 14 13 25 25 C 1.52998 * 109.47356 * 234.90474 * 23 14 13 26 26 C 1.39730 * 119.82755 * 359.70462 * 7 6 5 27 27 C 1.37704 * 119.91144 * 359.97438 * 26 7 6 28 28 H 1.09000 * 109.47234 * 59.99892 * 1 2 3 29 29 H 1.09000 * 109.46885 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.47261 * 299.99588 * 1 2 3 31 31 H 1.09004 * 109.47009 * 239.99928 * 2 1 3 32 32 H 1.09000 * 109.47234 * 120.00108 * 2 1 3 33 33 H 1.08007 * 119.95378 * 359.97438 * 5 4 3 34 34 H 1.07999 * 120.04787 * 180.27364 * 6 5 4 35 35 H 0.96998 * 119.99812 * 359.97438 * 10 8 7 36 36 H 1.09002 * 109.47630 * 299.99828 * 11 10 8 37 37 H 1.09003 * 109.47197 * 60.00699 * 11 10 8 38 38 H 1.09000 * 109.47217 * 300.00068 * 12 11 10 39 39 H 1.09000 * 109.47520 * 60.00062 * 12 11 10 40 40 H 1.09000 * 109.46822 * 300.00005 * 13 12 11 41 41 H 1.08994 * 109.47327 * 60.00143 * 13 12 11 42 42 H 0.97000 * 120.00187 * 180.02562 * 18 17 15 43 43 H 1.08998 * 109.47198 * 354.90968 * 23 14 13 44 44 H 1.08996 * 109.47225 * 63.31143 * 24 23 14 45 45 H 1.09004 * 109.46798 * 183.31451 * 24 23 14 46 46 H 1.08997 * 109.47002 * 303.30502 * 24 23 14 47 47 H 1.08991 * 109.46847 * 61.61871 * 25 23 14 48 48 H 1.08994 * 109.46959 * 181.62375 * 25 23 14 49 49 H 1.09003 * 109.46690 * 301.62473 * 25 23 14 50 50 H 1.08002 * 120.04366 * 179.97438 * 26 7 6 51 51 H 1.07999 * 119.95437 * 180.02562 * 27 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.3517 1.5251 0.0005 5 6 4.1968 0.4215 0.0068 6 6 5.5625 0.5976 0.0016 7 6 6.0985 1.8881 0.0020 8 6 7.5618 2.0815 0.0036 9 8 8.0265 3.2050 0.0045 10 7 8.3828 1.0127 0.0041 11 6 9.8351 1.2047 0.0051 12 6 10.5297 -0.1586 0.0048 13 6 12.0466 0.0419 0.0065 14 7 12.7117 -1.2635 0.0069 15 6 13.0238 -1.8733 -1.1788 16 1 12.9363 -2.9455 -1.2741 17 6 13.4525 -1.1132 -2.2584 18 7 13.9573 0.0860 -2.0599 19 14 13.3128 -1.7924 -3.9930 20 1 12.7155 -3.1511 -3.9460 21 1 12.4479 -0.8999 -4.8059 22 1 14.6633 -1.8656 -4.6061 23 6 13.0429 -1.9164 1.2758 24 6 12.2316 -3.2064 1.4125 25 6 14.5363 -2.2478 1.3043 26 6 5.2456 2.9950 0.0015 27 6 3.8810 2.8103 0.0000 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 1.8933 -0.5139 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 3.7816 -0.5756 0.0116 34 1 6.2184 -0.2604 0.0019 35 1 8.0121 0.1163 0.0038 36 1 10.1287 1.7617 -0.8847 37 1 10.1274 1.7615 0.8954 38 1 10.2363 -0.7161 0.8943 39 1 10.2375 -0.7152 -0.8856 40 1 12.3403 0.5995 -0.8828 41 1 12.3386 0.5982 0.8972 42 1 14.2566 0.6173 -2.8143 43 1 12.8034 -1.2472 2.1021 44 1 12.5140 -3.8991 0.6198 45 1 12.4338 -3.6617 2.3821 46 1 11.1689 -2.9773 1.3334 47 1 15.1143 -1.3263 1.2357 48 1 14.7772 -2.7594 2.2360 49 1 14.7812 -2.8939 0.4612 50 1 5.6561 3.9939 0.0023 51 1 3.2211 3.6653 -0.0008 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001649440068.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:25:23 Heat of formation + Delta-G solvation = -61.391262 kcal Electronic energy + Delta-G solvation = -28100.455449 eV Core-core repulsion = 24192.598595 eV Total energy + Delta-G solvation = -3907.856853 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -41.50666 -40.52620 -38.55547 -38.14334 -36.40286 -34.28857 -33.48354 -32.78179 -31.99304 -31.10517 -30.09909 -27.71425 -27.15351 -25.43494 -24.76334 -24.12909 -22.67213 -22.35339 -21.39766 -21.24508 -19.50847 -18.55723 -18.19997 -17.35446 -17.10350 -16.97869 -16.54640 -16.38328 -16.09030 -15.75397 -15.59621 -15.10476 -14.96355 -14.67874 -14.51501 -14.34206 -14.27630 -14.02568 -13.72976 -13.34597 -13.23864 -13.21838 -13.12461 -12.91602 -12.83545 -12.71476 -12.64987 -12.49222 -12.33044 -12.11145 -11.89452 -11.78778 -11.69011 -11.66833 -11.30216 -11.24749 -11.04543 -10.45942 -10.17886 -10.14965 -9.30498 -8.47593 -7.74647 -5.35990 -0.16476 0.27529 1.44509 1.49377 1.57226 1.79741 2.11279 2.17801 2.54435 2.79924 3.31334 3.61511 3.67748 3.72431 3.82629 4.07465 4.09734 4.18855 4.19303 4.31419 4.35322 4.37910 4.39241 4.51257 4.54094 4.65285 4.75019 4.82641 4.84675 4.91478 4.95709 4.96777 4.99676 5.06079 5.11693 5.16072 5.17697 5.22574 5.24935 5.27624 5.32330 5.41958 5.50902 5.60157 5.64940 5.70457 5.77500 5.92271 6.33226 6.52537 6.55340 7.17706 7.25533 7.96671 8.48606 9.20539 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.013609 B = 0.002109 C = 0.002095 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2057.022445 B =13274.135480 C =13359.637362 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.041 3.959 3 O -0.325 6.325 4 C 0.154 3.846 5 C -0.213 4.213 6 C -0.038 4.038 7 C -0.192 4.192 8 C 0.554 3.446 9 O -0.589 6.589 10 N -0.711 5.711 11 C 0.133 3.867 12 C -0.121 4.121 13 C 0.149 3.851 14 N -0.593 5.593 15 C -0.241 4.241 16 H 0.057 0.943 17 C -0.040 4.040 18 N -0.918 5.918 19 Si 0.945 3.055 20 H -0.266 1.266 21 H -0.294 1.294 22 H -0.297 1.297 23 C 0.151 3.849 24 C -0.142 4.142 25 C -0.137 4.137 26 C -0.029 4.029 27 C -0.167 4.167 28 H 0.062 0.938 29 H 0.099 0.901 30 H 0.063 0.937 31 H 0.076 0.924 32 H 0.077 0.923 33 H 0.163 0.837 34 H 0.152 0.848 35 H 0.412 0.588 36 H 0.043 0.957 37 H 0.060 0.940 38 H 0.070 0.930 39 H 0.054 0.946 40 H 0.061 0.939 41 H 0.025 0.975 42 H 0.247 0.753 43 H 0.057 0.943 44 H 0.036 0.964 45 H 0.065 0.935 46 H 0.048 0.952 47 H 0.023 0.977 48 H 0.065 0.935 49 H 0.036 0.964 50 H 0.135 0.865 51 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.755 -3.256 7.186 26.936 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.034 4.034 3 O -0.238 6.238 4 C 0.107 3.893 5 C -0.232 4.232 6 C -0.057 4.057 7 C -0.195 4.195 8 C 0.343 3.657 9 O -0.471 6.471 10 N -0.362 5.362 11 C 0.009 3.991 12 C -0.161 4.161 13 C 0.022 3.978 14 N -0.313 5.313 15 C -0.372 4.372 16 H 0.074 0.926 17 C -0.237 4.237 18 N -0.563 5.563 19 Si 0.775 3.225 20 H -0.190 1.190 21 H -0.221 1.221 22 H -0.224 1.224 23 C 0.045 3.955 24 C -0.201 4.201 25 C -0.196 4.196 26 C -0.048 4.048 27 C -0.185 4.185 28 H 0.081 0.919 29 H 0.118 0.882 30 H 0.082 0.918 31 H 0.094 0.906 32 H 0.096 0.904 33 H 0.180 0.820 34 H 0.169 0.831 35 H 0.250 0.750 36 H 0.062 0.938 37 H 0.079 0.921 38 H 0.088 0.912 39 H 0.073 0.927 40 H 0.079 0.921 41 H 0.044 0.956 42 H 0.056 0.944 43 H 0.075 0.925 44 H 0.055 0.945 45 H 0.084 0.916 46 H 0.067 0.933 47 H 0.042 0.958 48 H 0.084 0.916 49 H 0.055 0.945 50 H 0.153 0.847 51 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -25.486 -2.271 7.095 26.552 hybrid contribution 0.514 -0.361 -1.266 1.413 sum -24.972 -2.632 5.829 25.778 Atomic orbital electron populations 1.21819 0.91560 1.04227 1.03212 1.23184 0.96927 0.80374 1.02880 1.86048 1.18381 1.31884 1.87499 1.19404 0.82982 0.94299 0.92636 1.21456 0.93359 0.99459 1.08891 1.21344 0.95569 0.95747 0.93016 1.19788 0.91485 0.95599 1.12630 1.18648 0.87380 0.84208 0.75438 1.90742 1.78474 1.25315 1.52554 1.45884 1.06630 1.09500 1.74222 1.21169 0.78774 0.98346 1.00849 1.22129 0.97791 0.94427 1.01753 1.20715 0.89062 0.87837 1.00229 1.44087 1.66152 1.19931 1.01178 1.19070 1.36963 0.91917 0.89214 0.92554 1.25760 0.98371 0.97683 1.01848 1.70122 1.43042 1.13098 1.30051 0.85550 0.76741 0.78340 0.81882 1.19001 1.22144 1.22425 1.20676 0.93027 0.93932 0.87859 1.22046 0.99680 0.97860 1.00473 1.21954 0.97747 0.99727 1.00198 1.21107 0.92157 0.98909 0.92676 1.20532 0.94485 0.95986 1.07520 0.91917 0.88202 0.91797 0.90617 0.90431 0.81997 0.83059 0.75014 0.93822 0.92123 0.91168 0.92719 0.92096 0.95620 0.94378 0.92480 0.94457 0.91582 0.93263 0.95806 0.91610 0.94466 0.84733 0.83233 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.96 10.28 71.98 0.74 -0.22 16 2 C 0.04 0.36 5.45 71.98 0.39 0.75 16 3 O -0.32 -5.15 10.12 -90.23 -0.91 -6.06 16 4 C 0.15 2.70 6.70 22.63 0.15 2.86 16 5 C -0.21 -3.22 9.01 22.33 0.20 -3.02 16 6 C -0.04 -0.68 9.53 22.51 0.21 -0.47 16 7 C -0.19 -4.68 5.88 -20.08 -0.12 -4.80 16 8 C 0.55 17.28 7.76 86.72 0.67 17.95 16 9 O -0.59 -23.32 16.34 -3.98 -0.07 -23.38 16 10 N -0.71 -20.01 5.51 -466.21 -2.57 -22.58 16 11 C 0.13 4.51 5.67 86.38 0.49 5.00 16 12 C -0.12 -4.28 5.65 30.60 0.17 -4.11 16 13 C 0.15 6.64 5.28 86.38 0.46 7.09 16 14 N -0.59 -27.49 2.37 -678.03 -1.61 -29.10 16 15 C -0.24 -12.44 8.04 84.04 0.68 -11.77 16 16 H 0.06 2.92 7.14 -2.91 -0.02 2.90 16 17 C -0.04 -2.16 4.96 84.86 0.42 -1.74 16 18 N -0.92 -53.18 11.43 21.65 0.25 -52.93 16 19 Si 0.95 44.11 29.60 68.60 2.03 46.15 16 20 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 21 H -0.29 -13.89 7.11 99.48 0.71 -13.19 16 22 H -0.30 -14.05 7.11 99.48 0.71 -13.34 16 23 C 0.15 5.87 3.37 44.99 0.15 6.02 16 24 C -0.14 -4.63 9.19 71.98 0.66 -3.97 16 25 C -0.14 -5.35 9.11 71.98 0.66 -4.70 16 26 C -0.03 -0.68 9.58 22.50 0.22 -0.47 16 27 C -0.17 -3.21 9.97 22.32 0.22 -2.98 16 28 H 0.06 0.46 8.14 -2.39 -0.02 0.44 16 29 H 0.10 0.24 8.14 -2.39 -0.02 0.22 16 30 H 0.06 0.45 8.14 -2.39 -0.02 0.43 16 31 H 0.08 0.53 7.67 -2.38 -0.02 0.51 16 32 H 0.08 0.51 7.64 -2.39 -0.02 0.49 16 33 H 0.16 1.46 6.28 -2.91 -0.02 1.44 16 34 H 0.15 1.96 6.39 -2.91 -0.02 1.94 16 35 H 0.41 8.85 6.49 -92.71 -0.60 8.25 16 36 H 0.04 1.70 8.14 -2.39 -0.02 1.68 16 37 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16 38 H 0.07 2.20 8.14 -2.39 -0.02 2.18 16 39 H 0.05 2.06 8.14 -2.39 -0.02 2.04 16 40 H 0.06 3.23 5.48 -2.39 -0.01 3.21 16 41 H 0.03 1.11 7.88 -2.39 -0.02 1.09 16 42 H 0.25 14.03 8.31 -92.71 -0.77 13.26 16 43 H 0.06 2.08 7.77 -2.39 -0.02 2.06 16 44 H 0.04 1.32 7.32 -2.39 -0.02 1.30 16 45 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 46 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 47 H 0.02 1.00 8.14 -2.39 -0.02 0.98 16 48 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 49 H 0.04 1.57 7.50 -2.39 -0.02 1.55 16 50 H 0.13 3.25 7.64 -2.91 -0.02 3.23 16 51 H 0.15 2.36 8.06 -2.91 -0.02 2.34 16 Total: -1.00 -68.93 413.27 3.81 -65.12 By element: Atomic # 1 Polarization: 21.03 SS G_CDS: 0.31 Total: 21.34 kcal Atomic # 6 Polarization: -4.93 SS G_CDS: 6.38 Total: 1.45 kcal Atomic # 7 Polarization: -100.68 SS G_CDS: -3.92 Total: -104.60 kcal Atomic # 8 Polarization: -28.46 SS G_CDS: -0.98 Total: -29.44 kcal Atomic # 14 Polarization: 44.11 SS G_CDS: 2.03 Total: 46.15 kcal Total: -68.93 3.81 -65.12 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001649440068.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.724 kcal (2) G-P(sol) polarization free energy of solvation -68.930 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.206 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.814 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.115 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.391 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds