Wall clock time and date at job start Tue Mar 31 2020 18:40:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46498 * 109.46896 * 2 1 4 4 C 1.36945 * 119.99775 * 275.30219 * 3 2 1 5 5 H 1.08003 * 119.99413 * 37.57971 * 4 3 2 6 6 C 1.38812 * 120.00251 * 217.58027 * 4 3 2 7 7 N 1.31620 * 119.99666 * 21.42405 * 6 4 3 8 8 Si 1.86793 * 119.99868 * 201.42591 * 6 4 3 9 9 H 1.48500 * 109.47249 * 90.00320 * 8 6 4 10 10 H 1.48499 * 109.47144 * 209.99887 * 8 6 4 11 11 H 1.48496 * 109.47299 * 329.99858 * 8 6 4 12 12 C 1.46497 * 120.00466 * 95.30555 * 3 2 1 13 13 C 1.52998 * 109.47263 * 269.99634 * 12 3 2 14 14 C 1.52995 * 109.47429 * 179.97438 * 13 12 3 15 15 N 1.46502 * 109.47284 * 180.02562 * 14 13 12 16 16 C 1.34781 * 119.99931 * 180.02562 * 15 14 13 17 17 O 1.21276 * 119.99821 * 359.97438 * 16 15 14 18 18 C 1.50695 * 119.99906 * 180.02562 * 16 15 14 19 19 O 1.42893 * 109.47324 * 179.97438 * 18 16 15 20 20 C 1.35904 * 117.00567 * 179.97438 * 19 18 16 21 21 C 1.38758 * 120.04902 * 359.97438 * 20 19 18 22 22 C 1.38124 * 119.93867 * 180.02562 * 21 20 19 23 23 C 1.38286 * 120.05872 * 0.02562 * 22 21 20 24 24 C 1.50701 * 119.94317 * 179.97438 * 23 22 21 25 25 C 1.38245 * 120.10822 * 359.97438 * 23 22 21 26 26 C 1.38159 * 120.06058 * 359.68093 * 25 23 22 27 27 C 1.50695 * 120.03392 * 180.29391 * 26 25 23 28 28 H 1.09000 * 109.46811 * 179.97438 * 1 2 3 29 29 H 1.08993 * 109.47484 * 300.00423 * 1 2 3 30 30 H 1.09001 * 109.46964 * 60.00776 * 1 2 3 31 31 H 1.08993 * 109.47484 * 239.99576 * 2 1 3 32 32 H 1.09001 * 109.46964 * 119.99224 * 2 1 3 33 33 H 0.97001 * 119.99688 * 179.97438 * 7 6 4 34 34 H 1.09003 * 109.46963 * 149.99813 * 12 3 2 35 35 H 1.09004 * 109.46903 * 30.00157 * 12 3 2 36 36 H 1.09008 * 109.46951 * 59.99699 * 13 12 3 37 37 H 1.08995 * 109.47067 * 300.00364 * 13 12 3 38 38 H 1.09003 * 109.46598 * 60.00300 * 14 13 12 39 39 H 1.09003 * 109.47329 * 300.00245 * 14 13 12 40 40 H 0.97000 * 119.99606 * 0.02562 * 15 14 13 41 41 H 1.08996 * 109.47245 * 59.99188 * 18 16 15 42 42 H 1.09003 * 109.46794 * 299.99794 * 18 16 15 43 43 H 1.07994 * 120.03036 * 0.02644 * 21 20 19 44 44 H 1.08004 * 119.96791 * 180.02562 * 22 21 20 45 45 H 1.08995 * 109.47104 * 90.00266 * 24 23 22 46 46 H 1.09000 * 109.46885 * 209.99935 * 24 23 22 47 47 H 1.09001 * 109.47200 * 329.99393 * 24 23 22 48 48 H 1.08007 * 119.96560 * 179.97438 * 25 23 22 49 49 H 1.09001 * 109.47402 * 270.32643 * 27 26 25 50 50 H 1.09001 * 109.46695 * 30.32158 * 27 26 25 51 51 H 1.08997 * 109.47467 * 150.31890 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1431 2.0633 -1.1809 5 1 1.4106 1.9276 -1.9628 6 6 3.2112 2.9289 -1.3730 7 7 4.3026 2.7981 -0.6490 8 14 3.0994 4.2793 -2.6587 9 1 2.5376 5.5067 -2.0399 10 1 4.4550 4.5694 -3.1911 11 1 2.2168 3.8354 -3.7674 12 6 2.3730 2.0328 1.2632 13 6 1.1424 2.7385 1.8363 14 6 1.5127 3.4184 3.1559 15 7 0.3342 4.0936 3.7049 16 6 0.4238 4.7646 4.8704 17 8 1.4801 4.8091 5.4647 18 6 -0.7886 5.4586 5.4354 19 8 -0.4427 6.0938 6.6678 20 6 -1.4302 6.7697 7.3121 21 6 -2.7059 6.8209 6.7688 22 6 -3.7076 7.5090 7.4253 23 6 -3.4399 8.1469 8.6226 24 6 -4.5346 8.8973 9.3364 25 6 -2.1696 8.0973 9.1659 26 6 -1.1659 7.4044 8.5169 27 6 0.2169 7.3452 9.1130 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5137 -0.8901 31 1 1.8934 -0.5139 -0.8899 32 1 1.8933 -0.5137 0.8901 33 1 5.0491 3.4027 -0.7835 34 1 3.1615 2.7643 1.0858 35 1 2.7254 1.2835 1.9721 36 1 0.3539 2.0070 2.0136 37 1 0.7902 3.4877 1.1274 38 1 2.3013 4.1498 2.9789 39 1 1.8647 2.6689 3.8647 40 1 -0.5107 4.0576 3.2297 41 1 -1.5765 4.7267 5.6129 42 1 -1.1416 6.2078 4.7267 43 1 -2.9154 6.3233 5.8335 44 1 -4.7009 7.5488 7.0030 45 1 -5.0508 8.2236 10.0202 46 1 -4.1011 9.7241 9.8991 47 1 -5.2437 9.2872 8.6061 48 1 -1.9629 8.5967 10.1010 49 1 0.8059 8.1870 8.7489 50 1 0.1464 7.3941 10.1996 51 1 0.6985 6.4118 8.8217 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001660627603.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:40:32 Heat of formation + Delta-G solvation = -64.331220 kcal Electronic energy + Delta-G solvation = -27835.721839 eV Core-core repulsion = 23927.737499 eV Total energy + Delta-G solvation = -3907.984340 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.53351 -40.53870 -38.60460 -38.12275 -36.22013 -34.19783 -33.81433 -32.94473 -32.49804 -30.57055 -29.55395 -28.13135 -27.12332 -26.61541 -25.17457 -23.30885 -22.55485 -22.07727 -21.63001 -21.37828 -19.18444 -18.60698 -18.28413 -17.52871 -17.13452 -16.94559 -16.59431 -16.33030 -15.83951 -15.67465 -15.47001 -15.23927 -15.03680 -14.77256 -14.54030 -14.23249 -14.11168 -14.05627 -13.98490 -13.73729 -13.33967 -13.25776 -13.18716 -12.84255 -12.74148 -12.72398 -12.69738 -12.57708 -12.32233 -12.22418 -12.13232 -11.92851 -11.79077 -11.77516 -11.45832 -11.24467 -11.00069 -10.49609 -10.19739 -9.77006 -8.95184 -8.54431 -7.80461 -5.44862 0.36640 0.43614 1.44659 1.45132 1.48021 1.52725 1.55952 2.50513 2.65742 2.74871 3.24410 3.54539 3.67055 3.82064 3.88482 3.99132 4.05608 4.06171 4.16793 4.29778 4.35774 4.38429 4.45863 4.54137 4.55578 4.67918 4.73634 4.75941 4.77620 4.79463 4.89737 4.90429 4.99219 5.01204 5.04989 5.16033 5.17248 5.32816 5.34343 5.35891 5.36813 5.46739 5.48607 5.61655 5.68983 5.70558 5.85186 5.86785 6.33086 6.48642 6.50016 7.12320 7.19475 7.89423 8.41765 9.14009 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.016760 B = 0.001876 C = 0.001847 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1670.275188 B =14920.409162 C =15152.725516 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.133 3.867 3 N -0.601 5.601 4 C -0.262 4.262 5 H 0.056 0.944 6 C -0.038 4.038 7 N -0.919 5.919 8 Si 0.954 3.046 9 H -0.285 1.285 10 H -0.298 1.298 11 H -0.268 1.268 12 C 0.149 3.851 13 C -0.122 4.122 14 C 0.134 3.866 15 N -0.707 5.707 16 C 0.508 3.492 17 O -0.575 6.575 18 C 0.046 3.954 19 O -0.317 6.317 20 C 0.097 3.903 21 C -0.206 4.206 22 C -0.092 4.092 23 C -0.127 4.127 24 C -0.107 4.107 25 C -0.090 4.090 26 C -0.131 4.131 27 C -0.105 4.105 28 H 0.064 0.936 29 H 0.053 0.947 30 H 0.036 0.964 31 H 0.028 0.972 32 H 0.044 0.956 33 H 0.250 0.750 34 H 0.059 0.941 35 H 0.027 0.973 36 H 0.074 0.926 37 H 0.054 0.946 38 H 0.043 0.957 39 H 0.061 0.939 40 H 0.419 0.581 41 H 0.125 0.875 42 H 0.120 0.880 43 H 0.150 0.850 44 H 0.148 0.852 45 H 0.076 0.924 46 H 0.072 0.928 47 H 0.074 0.926 48 H 0.146 0.854 49 H 0.066 0.934 50 H 0.083 0.917 51 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.664 9.252 18.580 29.288 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.008 3.992 3 N -0.322 5.322 4 C -0.392 4.392 5 H 0.074 0.926 6 C -0.235 4.235 7 N -0.563 5.563 8 Si 0.783 3.217 9 H -0.211 1.211 10 H -0.224 1.224 11 H -0.192 1.192 12 C 0.022 3.978 13 C -0.162 4.162 14 C 0.010 3.990 15 N -0.361 5.361 16 C 0.294 3.706 17 O -0.454 6.454 18 C -0.032 4.032 19 O -0.230 6.230 20 C 0.052 3.948 21 C -0.224 4.224 22 C -0.110 4.110 23 C -0.127 4.127 24 C -0.164 4.164 25 C -0.108 4.108 26 C -0.132 4.132 27 C -0.161 4.161 28 H 0.083 0.917 29 H 0.072 0.928 30 H 0.055 0.945 31 H 0.046 0.954 32 H 0.062 0.938 33 H 0.059 0.941 34 H 0.077 0.923 35 H 0.045 0.955 36 H 0.092 0.908 37 H 0.073 0.927 38 H 0.062 0.938 39 H 0.079 0.921 40 H 0.256 0.744 41 H 0.142 0.858 42 H 0.138 0.862 43 H 0.168 0.832 44 H 0.166 0.834 45 H 0.094 0.906 46 H 0.091 0.909 47 H 0.093 0.907 48 H 0.163 0.837 49 H 0.085 0.915 50 H 0.102 0.898 51 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -19.541 9.292 19.023 28.810 hybrid contribution 0.293 0.491 -1.253 1.377 sum -19.248 9.783 17.770 27.963 Atomic orbital electron populations 1.22163 0.97107 1.00785 1.00926 1.21008 0.93965 0.85684 0.98584 1.43985 1.76450 1.09548 1.02242 1.19195 1.04042 1.21115 0.94872 0.92593 1.25867 0.94042 1.03407 1.00183 1.70135 1.03802 1.38052 1.44270 0.85474 0.76512 0.80115 0.79613 1.21135 1.22444 1.19218 1.20703 0.95370 0.96117 0.85585 1.22167 1.00719 0.99629 0.93696 1.21164 0.87323 0.95510 0.95046 1.45774 1.14777 1.52950 1.22556 1.20684 0.89921 0.78880 0.81070 1.90732 1.32176 1.61809 1.60694 1.22586 0.95323 0.98971 0.86330 1.86104 1.36011 1.65479 1.35428 1.19145 0.87940 0.94581 0.93151 1.21522 0.92075 1.05635 1.03174 1.21161 0.99500 0.95802 0.94511 1.20210 0.95618 1.00517 0.96376 1.20764 0.95944 0.99418 1.00273 1.21019 0.91666 0.97969 1.00132 1.19542 0.98158 1.01293 0.94223 1.20595 0.92418 1.02015 1.01105 0.91722 0.92836 0.94454 0.95357 0.93755 0.94069 0.92340 0.95456 0.90795 0.92675 0.93827 0.92100 0.74378 0.85787 0.86240 0.83220 0.83420 0.90574 0.90935 0.90665 0.83667 0.91534 0.89843 0.93079 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.83 10.21 71.98 0.73 -4.10 16 2 C 0.13 5.33 6.44 86.38 0.56 5.89 16 3 N -0.60 -28.64 2.43 -702.01 -1.71 -30.35 16 4 C -0.26 -13.88 9.45 84.03 0.79 -13.08 16 5 H 0.06 2.96 7.92 -2.91 -0.02 2.94 16 6 C -0.04 -2.05 4.95 84.86 0.42 -1.63 16 7 N -0.92 -53.49 11.47 21.65 0.25 -53.24 16 8 Si 0.95 43.97 29.60 68.60 2.03 46.00 16 9 H -0.28 -12.91 7.11 99.48 0.71 -12.21 16 10 H -0.30 -13.94 7.11 99.48 0.71 -13.23 16 11 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 12 C 0.15 6.68 5.33 86.38 0.46 7.14 16 13 C -0.12 -4.23 5.65 30.59 0.17 -4.05 16 14 C 0.13 4.34 5.67 86.38 0.49 4.83 16 15 N -0.71 -17.65 5.56 -463.06 -2.57 -20.22 16 16 C 0.51 14.29 7.91 87.65 0.69 14.98 16 17 O -0.58 -22.60 16.50 16.02 0.26 -22.34 16 18 C 0.05 0.88 5.22 71.23 0.37 1.26 16 19 O -0.32 -8.30 8.72 -73.44 -0.64 -8.94 16 20 C 0.10 2.15 6.66 22.51 0.15 2.30 16 21 C -0.21 -3.40 9.04 22.37 0.20 -3.20 16 22 C -0.09 -1.29 9.69 22.25 0.22 -1.08 16 23 C -0.13 -1.81 5.88 -19.85 -0.12 -1.93 16 24 C -0.11 -0.90 10.01 71.24 0.71 -0.19 16 25 C -0.09 -1.48 9.35 22.25 0.21 -1.27 16 26 C -0.13 -2.79 5.89 -19.77 -0.12 -2.90 16 27 C -0.10 -2.15 9.79 71.23 0.70 -1.45 16 28 H 0.06 1.70 8.14 -2.39 -0.02 1.69 16 29 H 0.05 1.60 6.64 -2.39 -0.02 1.59 16 30 H 0.04 1.28 8.14 -2.39 -0.02 1.26 16 31 H 0.03 1.19 8.08 -2.39 -0.02 1.17 16 32 H 0.04 1.66 7.83 -2.39 -0.02 1.64 16 33 H 0.25 14.20 8.31 -92.71 -0.77 13.43 16 34 H 0.06 3.10 5.52 -2.39 -0.01 3.09 16 35 H 0.03 1.18 7.86 -2.39 -0.02 1.16 16 36 H 0.07 2.25 6.64 -2.38 -0.02 2.24 16 37 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16 38 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 39 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 40 H 0.42 7.26 8.47 -92.71 -0.79 6.47 16 41 H 0.12 1.55 7.66 -2.39 -0.02 1.53 16 42 H 0.12 1.62 7.66 -2.39 -0.02 1.60 16 43 H 0.15 1.66 6.30 -2.91 -0.02 1.65 16 44 H 0.15 1.29 8.06 -2.91 -0.02 1.27 16 45 H 0.08 0.53 8.14 -2.39 -0.02 0.51 16 46 H 0.07 0.51 8.08 -2.39 -0.02 0.49 16 47 H 0.07 0.48 8.08 -2.39 -0.02 0.47 16 48 H 0.15 1.71 8.06 -2.91 -0.02 1.69 16 49 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 50 H 0.08 1.29 8.09 -2.39 -0.02 1.27 16 51 H 0.05 1.28 7.53 -2.39 -0.02 1.26 16 Total: -1.00 -73.08 416.55 4.40 -68.69 By element: Atomic # 1 Polarization: 18.76 SS G_CDS: 0.13 Total: 18.88 kcal Atomic # 6 Polarization: -5.13 SS G_CDS: 6.65 Total: 1.52 kcal Atomic # 7 Polarization: -99.78 SS G_CDS: -4.03 Total: -103.82 kcal Atomic # 8 Polarization: -30.90 SS G_CDS: -0.38 Total: -31.28 kcal Atomic # 14 Polarization: 43.97 SS G_CDS: 2.03 Total: 46.00 kcal Total: -73.08 4.40 -68.69 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001660627603.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.356 kcal (2) G-P(sol) polarization free energy of solvation -73.082 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.726 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.395 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.687 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.331 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds