Wall clock time and date at job start Tue Mar 31 2020 19:00:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46500 * 109.47054 * 2 1 4 4 C 1.36934 * 119.99869 * 275.30947 * 3 2 1 5 5 H 1.08006 * 120.00219 * 37.57564 * 4 3 2 6 6 C 1.38816 * 119.99836 * 217.58012 * 4 3 2 7 7 N 1.31619 * 120.00572 * 21.42796 * 6 4 3 8 8 Si 1.86805 * 119.99735 * 201.42980 * 6 4 3 9 9 H 1.48501 * 109.47381 * 0.02562 * 8 6 4 10 10 H 1.48505 * 109.47119 * 119.99820 * 8 6 4 11 11 H 1.48500 * 109.47294 * 239.99446 * 8 6 4 12 12 C 1.46503 * 119.99984 * 95.30725 * 3 2 1 13 13 C 1.52993 * 109.47019 * 269.99524 * 12 3 2 14 14 N 1.46503 * 109.47019 * 179.97438 * 13 12 3 15 15 C 1.34772 * 120.00286 * 180.02562 * 14 13 12 16 16 O 1.21284 * 119.99860 * 0.02562 * 15 14 13 17 17 C 1.50696 * 120.00277 * 180.02562 * 15 14 13 18 18 O 1.42902 * 109.47516 * 180.02562 * 17 15 14 19 19 C 1.35899 * 117.00506 * 179.97438 * 18 17 15 20 20 C 1.38737 * 120.05394 * 269.73180 * 19 18 17 21 21 C 1.50697 * 120.02869 * 359.97438 * 20 19 18 22 22 C 1.38148 * 119.94129 * 179.70041 * 20 19 18 23 23 C 1.38270 * 120.05237 * 0.59196 * 22 20 19 24 24 C 1.50699 * 119.93875 * 179.70822 * 23 22 20 25 25 C 1.38263 * 120.11471 * 359.67516 * 23 22 20 26 26 C 1.38143 * 120.05273 * 0.03076 * 25 23 22 27 27 C 1.50703 * 120.02624 * 180.02562 * 26 25 23 28 28 H 1.08998 * 109.47150 * 60.00238 * 1 2 3 29 29 H 1.08997 * 109.47403 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47132 * 300.00386 * 1 2 3 31 31 H 1.08999 * 109.47132 * 239.99614 * 2 1 3 32 32 H 1.08997 * 109.46670 * 119.99536 * 2 1 3 33 33 H 0.96996 * 120.00502 * 180.02562 * 7 6 4 34 34 H 1.09004 * 109.46373 * 150.00108 * 12 3 2 35 35 H 1.08997 * 109.46906 * 30.00099 * 12 3 2 36 36 H 1.09008 * 109.46986 * 60.00503 * 13 12 3 37 37 H 1.08997 * 109.47751 * 300.00058 * 13 12 3 38 38 H 0.96998 * 119.99809 * 0.02562 * 14 13 12 39 39 H 1.08995 * 109.47291 * 60.00030 * 17 15 14 40 40 H 1.09002 * 109.47352 * 299.99790 * 17 15 14 41 41 H 1.09000 * 109.46999 * 90.00493 * 21 20 19 42 42 H 1.09003 * 109.47343 * 210.00308 * 21 20 19 43 43 H 1.08999 * 109.47208 * 330.01082 * 21 20 19 44 44 H 1.07996 * 119.97438 * 180.31213 * 22 20 19 45 45 H 1.08998 * 109.46471 * 269.97036 * 24 23 22 46 46 H 1.08998 * 109.47799 * 29.97440 * 24 23 22 47 47 H 1.09000 * 109.47181 * 149.97455 * 24 23 22 48 48 H 1.07998 * 119.97240 * 180.02562 * 25 23 22 49 49 H 1.08996 * 109.47089 * 269.97580 * 27 26 25 50 50 H 1.09000 * 109.47134 * 29.97272 * 27 26 25 51 51 H 1.08997 * 109.47486 * 149.97416 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1431 2.0633 -1.1808 5 1 1.4105 1.9277 -1.9628 6 6 3.2112 2.9289 -1.3728 7 7 4.3027 2.7981 -0.6491 8 14 3.0993 4.2795 -2.6585 9 1 1.7771 4.2142 -3.3314 10 1 3.2549 5.6023 -2.0016 11 1 4.1766 4.0964 -3.6639 12 6 2.3731 2.0327 1.2633 13 6 1.1425 2.7383 1.8364 14 7 1.4972 3.3893 3.1000 15 6 0.5646 4.0759 3.7894 16 8 -0.5684 4.1545 3.3639 17 6 0.9295 4.7460 5.0889 18 8 -0.2201 5.4041 5.6249 19 6 -0.0612 6.0617 6.8036 20 6 -0.2789 5.3999 8.0033 21 6 -0.6926 3.9508 8.0010 22 6 -0.1107 6.0689 9.2002 23 6 0.2625 7.4003 9.2028 24 6 0.4389 8.1294 10.5098 25 6 0.4747 8.0636 8.0083 26 6 0.3136 7.3973 6.8090 27 6 0.5456 8.1207 5.5074 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8899 31 1 1.8933 -0.5139 -0.8899 32 1 1.8932 -0.5138 0.8900 33 1 5.0489 3.4031 -0.7831 34 1 3.1616 2.7642 1.0859 35 1 2.7254 1.2834 1.9721 36 1 0.3540 2.0069 2.0138 37 1 0.7903 3.4877 1.1276 38 1 2.4032 3.3262 3.4405 39 1 1.7177 5.4778 4.9116 40 1 1.2822 3.9967 5.7976 41 1 0.1956 3.3194 8.0242 42 1 -1.3065 3.7468 8.8783 43 1 -1.2660 3.7381 7.0988 44 1 -0.2752 5.5529 10.1345 45 1 -0.5078 8.5829 10.8034 46 1 0.7584 7.4257 11.2783 47 1 1.1935 8.9072 10.3930 48 1 0.7665 9.1034 8.0130 49 1 -0.3875 8.5729 5.1717 50 1 1.2948 8.8990 5.6528 51 1 0.8975 7.4135 4.7563 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001663451618.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:00:46 Heat of formation + Delta-G solvation = -62.823229 kcal Electronic energy + Delta-G solvation = -28647.388840 eV Core-core repulsion = 24739.469892 eV Total energy + Delta-G solvation = -3907.918948 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.49502 -40.53752 -38.49847 -37.99541 -35.66842 -34.57692 -33.84279 -33.69519 -31.67536 -30.24114 -28.94466 -28.55444 -27.66346 -26.66860 -25.94025 -23.47926 -22.17826 -21.95398 -21.73385 -21.55367 -18.97701 -18.71055 -18.10111 -17.85351 -17.03199 -16.94607 -16.52849 -15.88489 -15.81078 -15.44920 -15.37990 -15.00201 -14.96405 -14.77735 -14.23369 -14.12630 -14.08264 -14.03077 -13.94003 -13.78551 -13.74430 -13.56764 -13.26126 -13.23005 -13.03689 -12.74265 -12.65663 -12.38345 -12.30652 -12.22867 -12.15374 -12.04643 -11.98210 -11.68550 -11.51270 -10.96594 -10.95231 -10.56085 -10.09055 -9.57288 -9.32109 -8.60894 -7.87205 -5.49726 0.12951 0.34469 1.41440 1.46708 1.50641 1.55800 1.75511 2.47150 2.56216 3.02987 3.21036 3.62819 3.78688 3.79931 3.83828 3.91395 4.05286 4.08426 4.30977 4.32970 4.40487 4.40906 4.46730 4.49807 4.54212 4.67559 4.69171 4.71124 4.73458 4.77096 4.81439 4.84154 4.88591 4.96043 5.08026 5.08801 5.20467 5.23778 5.28400 5.30983 5.36364 5.43396 5.55877 5.56043 5.63437 5.65328 5.73512 5.83889 6.41017 6.45723 6.59011 7.13064 7.19610 7.81733 8.33721 9.08750 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.016196 B = 0.002346 C = 0.002150 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1728.385552 B =11932.469347 C =13021.229627 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.136 3.864 3 N -0.597 5.597 4 C -0.269 4.269 5 H 0.051 0.949 6 C -0.028 4.028 7 N -0.909 5.909 8 Si 0.949 3.051 9 H -0.275 1.275 10 H -0.288 1.288 11 H -0.286 1.286 12 C 0.145 3.855 13 C 0.121 3.879 14 N -0.707 5.707 15 C 0.508 3.492 16 O -0.576 6.576 17 C 0.056 3.944 18 O -0.329 6.329 19 C 0.055 3.945 20 C -0.102 4.102 21 C -0.113 4.113 22 C -0.120 4.120 23 C -0.084 4.084 24 C -0.112 4.112 25 C -0.121 4.121 26 C -0.104 4.104 27 C -0.112 4.112 28 H 0.033 0.967 29 H 0.069 0.931 30 H 0.040 0.960 31 H 0.037 0.963 32 H 0.053 0.947 33 H 0.254 0.746 34 H 0.075 0.925 35 H 0.048 0.952 36 H 0.049 0.951 37 H 0.029 0.971 38 H 0.415 0.585 39 H 0.102 0.898 40 H 0.109 0.891 41 H 0.081 0.919 42 H 0.086 0.914 43 H 0.052 0.948 44 H 0.148 0.852 45 H 0.079 0.921 46 H 0.078 0.922 47 H 0.076 0.924 48 H 0.145 0.855 49 H 0.069 0.931 50 H 0.087 0.913 51 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.583 7.701 24.506 25.936 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.011 3.989 3 N -0.319 5.319 4 C -0.399 4.399 5 H 0.068 0.932 6 C -0.227 4.227 7 N -0.553 5.553 8 Si 0.778 3.222 9 H -0.200 1.200 10 H -0.215 1.215 11 H -0.213 1.213 12 C 0.018 3.982 13 C -0.006 4.006 14 N -0.361 5.361 15 C 0.295 3.705 16 O -0.455 6.455 17 C -0.021 4.021 18 O -0.246 6.246 19 C 0.012 3.988 20 C -0.102 4.102 21 C -0.170 4.170 22 C -0.138 4.138 23 C -0.084 4.084 24 C -0.168 4.168 25 C -0.139 4.139 26 C -0.104 4.104 27 C -0.168 4.168 28 H 0.052 0.948 29 H 0.088 0.912 30 H 0.059 0.941 31 H 0.056 0.944 32 H 0.072 0.928 33 H 0.064 0.936 34 H 0.093 0.907 35 H 0.066 0.934 36 H 0.067 0.933 37 H 0.048 0.952 38 H 0.251 0.749 39 H 0.120 0.880 40 H 0.127 0.873 41 H 0.099 0.901 42 H 0.104 0.896 43 H 0.071 0.929 44 H 0.166 0.834 45 H 0.098 0.902 46 H 0.097 0.903 47 H 0.095 0.905 48 H 0.163 0.837 49 H 0.088 0.912 50 H 0.106 0.894 51 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -4.384 7.774 24.049 25.651 hybrid contribution 0.405 0.631 -1.059 1.297 sum -3.979 8.406 22.990 24.800 Atomic orbital electron populations 1.22223 0.98094 1.00859 1.00325 1.21017 0.93075 0.85422 0.99382 1.43859 1.76351 1.09656 1.01996 1.19177 1.04330 1.21723 0.94715 0.93155 1.25746 0.94047 1.02822 1.00038 1.70078 1.03526 1.37880 1.43785 0.85510 0.77576 0.79815 0.79339 1.19970 1.21501 1.21261 1.20935 0.94218 0.96846 0.86218 1.21973 1.00140 0.95318 0.83121 1.45806 1.13919 1.52952 1.23401 1.20742 0.84963 0.78683 0.86138 1.90701 1.22427 1.61661 1.70730 1.22424 0.88864 0.98062 0.92768 1.86087 1.33408 1.69026 1.36089 1.18652 1.04289 0.91183 0.84715 1.20433 0.99714 0.97665 0.92413 1.20739 1.02076 0.91047 1.03131 1.21095 1.00924 0.94443 0.97307 1.20315 0.97446 0.94184 0.96423 1.20842 1.03053 1.00380 0.92518 1.21070 1.01691 1.00696 0.90465 1.20411 0.99205 0.93714 0.97101 1.20725 1.02640 1.00071 0.93401 0.94781 0.91203 0.94109 0.94414 0.92826 0.93649 0.90728 0.93354 0.93286 0.95243 0.74860 0.88049 0.87294 0.90091 0.89567 0.92908 0.83429 0.90225 0.90292 0.90472 0.83704 0.91232 0.89378 0.92862 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.63 10.21 71.98 0.73 -4.89 16 2 C 0.14 5.57 6.44 86.38 0.56 6.12 16 3 N -0.60 -28.89 2.43 -702.01 -1.71 -30.59 16 4 C -0.27 -14.57 9.45 84.03 0.79 -13.77 16 5 H 0.05 2.79 7.92 -2.91 -0.02 2.76 16 6 C -0.03 -1.54 4.95 84.86 0.42 -1.12 16 7 N -0.91 -50.51 11.47 21.65 0.25 -50.26 16 8 Si 0.95 44.32 29.60 68.60 2.03 46.35 16 9 H -0.27 -12.71 7.11 99.48 0.71 -12.00 16 10 H -0.29 -13.42 7.11 99.48 0.71 -12.72 16 11 H -0.29 -13.14 7.11 99.48 0.71 -12.43 16 12 C 0.15 6.34 5.45 86.38 0.47 6.81 16 13 C 0.12 4.93 6.00 86.38 0.52 5.44 16 14 N -0.71 -22.99 5.56 -463.06 -2.57 -25.56 16 15 C 0.51 17.34 7.91 87.66 0.69 18.03 16 16 O -0.58 -25.64 16.50 15.99 0.26 -25.38 16 17 C 0.06 1.42 6.17 71.23 0.44 1.85 16 18 O -0.33 -9.84 7.85 -73.37 -0.58 -10.41 16 19 C 0.05 1.37 5.67 22.51 0.13 1.50 16 20 C -0.10 -2.13 5.89 -19.77 -0.12 -2.25 16 21 C -0.11 -2.09 9.79 71.23 0.70 -1.40 16 22 C -0.12 -1.96 9.35 22.26 0.21 -1.75 16 23 C -0.08 -1.27 5.88 -19.85 -0.12 -1.38 16 24 C -0.11 -0.96 10.01 71.24 0.71 -0.25 16 25 C -0.12 -2.08 9.35 22.25 0.21 -1.87 16 26 C -0.10 -2.28 5.89 -19.77 -0.12 -2.40 16 27 C -0.11 -2.32 9.79 71.24 0.70 -1.63 16 28 H 0.03 1.32 8.14 -2.39 -0.02 1.30 16 29 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 30 H 0.04 1.49 6.64 -2.39 -0.02 1.48 16 31 H 0.04 1.59 8.08 -2.39 -0.02 1.57 16 32 H 0.05 1.97 7.83 -2.39 -0.02 1.95 16 33 H 0.25 13.58 8.31 -92.71 -0.77 12.81 16 34 H 0.07 3.69 5.52 -2.38 -0.01 3.67 16 35 H 0.05 1.90 7.86 -2.39 -0.02 1.88 16 36 H 0.05 2.04 6.64 -2.38 -0.02 2.03 16 37 H 0.03 1.41 8.14 -2.39 -0.02 1.39 16 38 H 0.41 10.62 8.47 -92.71 -0.79 9.84 16 39 H 0.10 2.14 7.26 -2.39 -0.02 2.12 16 40 H 0.11 2.09 8.14 -2.39 -0.02 2.08 16 41 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 42 H 0.09 1.22 8.09 -2.39 -0.02 1.20 16 43 H 0.05 1.24 7.53 -2.39 -0.02 1.22 16 44 H 0.15 1.65 8.06 -2.91 -0.02 1.63 16 45 H 0.08 0.59 8.14 -2.39 -0.02 0.57 16 46 H 0.08 0.51 8.08 -2.39 -0.02 0.49 16 47 H 0.08 0.53 8.08 -2.39 -0.02 0.51 16 48 H 0.15 1.80 8.06 -2.91 -0.02 1.78 16 49 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 50 H 0.09 1.38 8.09 -2.39 -0.02 1.36 16 51 H 0.05 1.26 6.33 -2.39 -0.02 1.24 16 Total: -1.00 -71.09 416.78 4.74 -66.35 By element: Atomic # 1 Polarization: 22.33 SS G_CDS: 0.13 Total: 22.46 kcal Atomic # 6 Polarization: 0.12 SS G_CDS: 6.93 Total: 7.05 kcal Atomic # 7 Polarization: -102.38 SS G_CDS: -4.03 Total: -106.42 kcal Atomic # 8 Polarization: -35.48 SS G_CDS: -0.31 Total: -35.79 kcal Atomic # 14 Polarization: 44.32 SS G_CDS: 2.03 Total: 46.35 kcal Total: -71.09 4.74 -66.35 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663451618.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.527 kcal (2) G-P(sol) polarization free energy of solvation -71.094 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.567 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.744 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.350 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.823 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds