Wall clock time and date at job start Tue Mar 31 2020 17:55:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42896 * 113.99957 * 2 1 4 4 C 1.53009 * 109.46986 * 179.97438 * 3 2 1 5 5 H 1.09000 * 109.46624 * 305.00006 * 4 3 2 6 6 C 1.52998 * 109.46935 * 64.99743 * 4 3 2 7 7 C 1.52999 * 109.47094 * 184.99833 * 4 3 2 8 8 H 1.09003 * 109.46690 * 299.99964 * 7 4 3 9 9 C 1.52995 * 109.47028 * 179.97438 * 7 4 3 10 10 C 1.50698 * 109.47004 * 59.99614 * 7 4 3 11 11 O 1.21283 * 120.00472 * 0.02562 * 10 7 4 12 12 N 1.34777 * 119.99538 * 179.97438 * 10 7 4 13 13 C 1.46499 * 119.99665 * 179.72653 * 12 10 7 14 14 C 1.50703 * 109.47138 * 180.28062 * 13 12 10 15 15 C 1.38233 * 119.99680 * 269.72871 * 14 13 12 16 16 C 1.38240 * 120.00155 * 179.76981 * 15 14 13 17 17 C 1.38241 * 119.99430 * 0.47615 * 16 15 14 18 18 C 1.50695 * 119.99655 * 179.77268 * 17 16 15 19 19 N 1.46502 * 109.47431 * 270.02262 * 18 17 16 20 20 C 1.36936 * 120.00293 * 180.02562 * 19 18 17 21 21 H 1.08001 * 119.99933 * 359.97438 * 20 19 18 22 22 C 1.38812 * 120.00060 * 180.02562 * 20 19 18 23 23 N 1.31624 * 119.99978 * 359.97438 * 22 20 19 24 24 Si 1.86794 * 120.00063 * 180.02562 * 22 20 19 25 25 H 1.48498 * 109.47176 * 89.99693 * 24 22 20 26 26 H 1.48506 * 109.46863 * 209.99920 * 24 22 20 27 27 H 1.48504 * 109.47041 * 329.99363 * 24 22 20 28 28 C 1.38233 * 120.00075 * 359.79594 * 17 16 15 29 29 C 1.38231 * 120.00146 * 89.99859 * 14 13 12 30 30 H 1.09003 * 109.47690 * 300.00545 * 1 2 3 31 31 H 1.09007 * 109.46809 * 60.00643 * 1 2 3 32 32 H 1.09002 * 109.47393 * 180.02562 * 1 2 3 33 33 H 1.08993 * 109.47568 * 59.99457 * 3 2 1 34 34 H 1.09002 * 109.47046 * 299.99388 * 3 2 1 35 35 H 1.09001 * 109.47077 * 299.99770 * 6 4 3 36 36 H 1.08995 * 109.47540 * 59.99982 * 6 4 3 37 37 H 1.09001 * 109.46719 * 180.02562 * 6 4 3 38 38 H 1.08995 * 109.47139 * 300.00141 * 9 7 4 39 39 H 1.09003 * 109.47199 * 59.99964 * 9 7 4 40 40 H 1.09001 * 109.46983 * 179.97438 * 9 7 4 41 41 H 0.97001 * 120.00485 * 0.02562 * 12 10 7 42 42 H 1.09009 * 109.47454 * 300.27637 * 13 12 10 43 43 H 1.08998 * 109.47492 * 60.27932 * 13 12 10 44 44 H 1.08005 * 120.00115 * 359.97438 * 15 14 13 45 45 H 1.07995 * 120.00252 * 180.25669 * 16 15 14 46 46 H 1.09000 * 109.47642 * 30.02444 * 18 17 16 47 47 H 1.08998 * 109.47269 * 150.02425 * 18 17 16 48 48 H 0.97000 * 119.99844 * 0.02562 * 19 18 17 49 49 H 0.96991 * 119.99957 * 179.97438 * 23 22 20 50 50 H 1.08000 * 120.00181 * 179.97438 * 28 17 16 51 51 H 1.07994 * 120.00283 * 0.02562 * 29 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 1 3.8507 0.5684 0.8427 6 6 3.9962 0.5363 -1.3064 7 6 4.1573 2.5768 0.1263 8 1 3.8420 3.1929 -0.7158 9 6 5.6825 2.4559 0.1276 10 6 3.7034 3.2154 1.4136 11 8 2.9564 2.6158 2.1576 12 7 4.1283 4.4524 1.7387 13 6 3.6823 5.0756 2.9872 14 6 4.2908 6.4489 3.1086 15 6 5.5099 6.6113 3.7397 16 6 6.0705 7.8704 3.8469 17 6 5.4072 8.9684 3.3317 18 6 6.0158 10.3416 3.4531 19 7 5.5699 10.9649 4.7016 20 6 5.9967 12.2242 5.0289 21 1 6.6624 12.7578 4.3667 22 6 5.5745 12.8145 6.2122 23 7 4.7635 12.1640 7.0194 24 14 6.1561 14.5326 6.6582 25 1 5.2069 15.5344 6.1101 26 1 6.2181 14.6661 8.1360 27 1 7.5059 14.7631 6.0834 28 6 4.1854 8.8067 2.7056 29 6 3.6273 7.5469 2.5939 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 -0.3634 -1.0277 0.0005 33 1 1.6886 1.8464 0.8899 34 1 1.6886 1.8463 -0.8901 35 1 3.5532 -0.4556 -1.3959 36 1 3.6810 1.1523 -2.1484 37 1 5.0828 0.4498 -1.3057 38 1 5.9974 1.8400 0.9699 39 1 6.0112 1.9939 -0.8033 40 1 6.1255 3.4479 0.2167 41 1 4.7260 4.9319 1.1439 42 1 2.5954 5.1589 2.9838 43 1 3.9970 4.4628 3.8319 44 1 6.0261 5.7540 4.1461 45 1 7.0249 7.9967 4.3363 46 1 7.1027 10.2584 3.4565 47 1 5.7011 10.9545 2.6085 48 1 4.9722 10.4855 5.2965 49 1 4.4688 12.5763 7.8464 50 1 3.6670 9.6645 2.3034 51 1 2.6727 7.4207 2.1051 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001666333356.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:55:15 Heat of formation + Delta-G solvation = -62.794128 kcal Electronic energy + Delta-G solvation = -27781.446260 eV Core-core repulsion = 23873.528574 eV Total energy + Delta-G solvation = -3907.917686 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.55978 -39.28997 -38.13253 -36.00575 -35.47054 -34.39049 -32.23721 -30.94256 -30.75498 -29.92530 -27.73839 -27.01806 -26.33069 -24.67077 -23.86179 -22.52622 -22.42818 -21.29872 -20.54096 -19.97449 -17.75862 -17.30654 -16.71009 -16.34235 -16.14095 -15.86553 -15.62176 -15.40994 -14.95265 -14.70892 -14.58249 -14.27776 -14.07254 -13.62336 -13.41117 -13.29322 -13.23598 -13.16747 -12.74399 -12.60711 -12.40068 -12.31496 -12.12869 -12.01879 -11.87159 -11.76474 -11.53340 -11.16234 -11.07151 -10.91203 -10.88613 -10.76613 -10.62072 -10.12937 -10.09125 -9.80883 -9.64396 -9.24407 -8.93481 -8.72656 -8.46767 -6.97752 -5.79623 -3.09774 1.36212 1.60362 2.37409 3.01724 3.41430 3.46322 3.46750 3.48348 3.96201 4.34666 4.39131 4.50354 4.58741 4.64405 4.80295 4.92073 4.95007 4.97719 5.05155 5.10435 5.13588 5.15320 5.27030 5.29769 5.34234 5.36521 5.39350 5.45651 5.51059 5.53715 5.58729 5.65600 5.70833 5.73820 5.81837 5.93362 6.02765 6.11499 6.13134 6.16018 6.20042 6.45024 6.54736 6.59554 6.66027 6.93972 7.06496 7.17913 7.26448 7.65734 7.97445 8.37997 9.49604 10.05353 10.41024 11.42784 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.029558 B = 0.001667 C = 0.001621 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 947.075995 B =16788.966536 C =17264.075655 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.391 6.391 3 C 0.053 3.947 4 C -0.069 4.069 5 H 0.086 0.914 6 C -0.146 4.146 7 C -0.106 4.106 8 H 0.099 0.901 9 C -0.145 4.145 10 C 0.512 3.488 11 O -0.536 6.536 12 N -0.722 5.722 13 C 0.165 3.835 14 C -0.125 4.125 15 C -0.103 4.103 16 C -0.106 4.106 17 C -0.064 4.064 18 C 0.184 3.816 19 N -0.726 5.726 20 C -0.244 4.244 21 H 0.072 0.928 22 C -0.012 4.012 23 N -0.931 5.931 24 Si 0.909 3.091 25 H -0.289 1.289 26 H -0.291 1.291 27 H -0.281 1.281 28 C -0.106 4.106 29 C -0.104 4.104 30 H 0.041 0.959 31 H 0.037 0.963 32 H 0.083 0.917 33 H 0.079 0.921 34 H 0.038 0.962 35 H 0.065 0.935 36 H 0.052 0.948 37 H 0.059 0.941 38 H 0.063 0.937 39 H 0.073 0.927 40 H 0.063 0.937 41 H 0.402 0.598 42 H 0.074 0.926 43 H 0.075 0.925 44 H 0.119 0.881 45 H 0.124 0.876 46 H 0.028 0.972 47 H 0.028 0.972 48 H 0.386 0.614 49 H 0.256 0.744 50 H 0.124 0.876 51 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.475 -23.527 -18.289 29.902 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.310 6.310 3 C -0.023 4.023 4 C -0.088 4.088 5 H 0.104 0.896 6 C -0.203 4.203 7 C -0.127 4.127 8 H 0.117 0.883 9 C -0.203 4.203 10 C 0.299 3.701 11 O -0.413 6.413 12 N -0.374 5.374 13 C 0.042 3.958 14 C -0.125 4.125 15 C -0.122 4.122 16 C -0.125 4.125 17 C -0.064 4.064 18 C 0.057 3.943 19 N -0.371 5.371 20 C -0.375 4.375 21 H 0.090 0.910 22 C -0.208 4.208 23 N -0.579 5.579 24 Si 0.740 3.260 25 H -0.217 1.217 26 H -0.217 1.217 27 H -0.207 1.207 28 C -0.125 4.125 29 C -0.123 4.123 30 H 0.060 0.940 31 H 0.056 0.944 32 H 0.102 0.898 33 H 0.097 0.903 34 H 0.056 0.944 35 H 0.084 0.916 36 H 0.072 0.928 37 H 0.078 0.922 38 H 0.082 0.918 39 H 0.092 0.908 40 H 0.082 0.918 41 H 0.237 0.763 42 H 0.092 0.908 43 H 0.093 0.907 44 H 0.137 0.863 45 H 0.142 0.858 46 H 0.046 0.954 47 H 0.046 0.954 48 H 0.219 0.781 49 H 0.066 0.934 50 H 0.142 0.858 51 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -2.817 -23.953 -17.729 29.933 hybrid contribution 0.076 1.458 0.315 1.494 sum -2.741 -22.494 -17.414 28.579 Atomic orbital electron populations 1.22694 0.81278 1.02439 0.99918 1.87805 1.19434 1.28294 1.95473 1.22929 0.93307 0.84820 1.01257 1.20871 0.93543 0.94558 0.99831 0.89577 1.21864 1.01102 1.01343 0.96025 1.21343 0.97965 0.97346 0.96064 0.88331 1.21828 0.92244 1.02819 1.03403 1.20702 0.80366 0.81138 0.87902 1.90667 1.35857 1.62569 1.52229 1.46189 1.50543 1.16963 1.23683 1.20165 0.98983 0.90122 0.86497 1.19673 0.96324 0.94134 1.02418 1.20990 0.94949 0.97344 0.98911 1.21131 1.00471 0.91893 0.98970 1.20395 0.94453 0.96384 0.95203 1.19709 0.96140 0.87468 0.90985 1.42335 1.57830 1.16785 1.20147 1.19242 1.23414 0.91796 1.03037 0.91046 1.24767 1.00065 0.98694 0.97310 1.69674 1.37651 1.37647 1.12941 0.86164 0.78187 0.84248 0.77411 1.21665 1.21724 1.20707 1.21124 0.95220 0.96927 0.99207 1.20980 0.99397 0.92282 0.99593 0.94027 0.94409 0.89848 0.90314 0.94365 0.91630 0.92847 0.92248 0.91790 0.90836 0.91803 0.76328 0.90801 0.90717 0.86334 0.85796 0.95383 0.95396 0.78051 0.93434 0.85814 0.86383 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 11.01 101.05 1.11 1.37 16 2 O -0.39 -4.16 10.24 -35.23 -0.36 -4.52 16 3 C 0.05 0.51 5.06 37.16 0.19 0.70 16 4 C -0.07 -0.57 1.85 -90.62 -0.17 -0.74 16 5 H 0.09 0.86 8.10 -51.93 -0.42 0.44 16 6 C -0.15 -0.95 8.74 37.16 0.32 -0.63 16 7 C -0.11 -0.73 2.32 -91.78 -0.21 -0.94 16 8 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 9 C -0.15 -0.78 8.74 37.16 0.32 -0.46 16 10 C 0.51 5.01 6.83 -10.99 -0.08 4.93 16 11 O -0.54 -7.19 13.67 5.55 0.08 -7.11 16 12 N -0.72 -6.33 5.44 -61.47 -0.33 -6.66 16 13 C 0.16 1.73 5.80 -5.19 -0.03 1.70 16 14 C -0.12 -1.48 5.25 -104.62 -0.55 -2.03 16 15 C -0.10 -1.31 9.70 -39.58 -0.38 -1.69 16 16 C -0.11 -1.59 9.70 -39.58 -0.38 -1.97 16 17 C -0.06 -1.06 5.25 -104.62 -0.55 -1.61 16 18 C 0.18 3.67 6.38 -5.19 -0.03 3.64 16 19 N -0.73 -18.41 5.59 -61.09 -0.34 -18.75 16 20 C -0.24 -6.80 9.99 -15.06 -0.15 -6.95 16 21 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 22 C -0.01 -0.35 5.50 -17.43 -0.10 -0.44 16 23 N -0.93 -28.22 13.06 55.49 0.72 -27.50 16 24 Si 0.91 22.26 29.55 -169.99 -5.02 17.23 16 25 H -0.29 -7.05 7.11 56.52 0.40 -6.64 16 26 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 27 H -0.28 -6.68 7.11 56.52 0.40 -6.27 16 28 C -0.11 -1.59 9.70 -39.58 -0.38 -1.98 16 29 C -0.10 -1.31 9.70 -39.58 -0.38 -1.69 16 30 H 0.04 0.33 8.14 -51.93 -0.42 -0.10 16 31 H 0.04 0.25 8.14 -51.92 -0.42 -0.17 16 32 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.08 0.92 5.41 -51.93 -0.28 0.64 16 34 H 0.04 0.32 8.14 -51.93 -0.42 -0.10 16 35 H 0.06 0.49 7.82 -51.93 -0.41 0.09 16 36 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 37 H 0.06 0.31 6.43 -51.93 -0.33 -0.02 16 38 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 39 H 0.07 0.31 6.43 -51.93 -0.33 -0.03 16 40 H 0.06 0.29 7.56 -51.93 -0.39 -0.10 16 41 H 0.40 2.81 7.88 -40.82 -0.32 2.48 16 42 H 0.07 0.81 8.09 -51.92 -0.42 0.39 16 43 H 0.07 0.83 8.08 -51.93 -0.42 0.41 16 44 H 0.12 1.27 8.06 -52.48 -0.42 0.85 16 45 H 0.12 1.82 8.06 -52.49 -0.42 1.39 16 46 H 0.03 0.56 8.09 -51.93 -0.42 0.14 16 47 H 0.03 0.55 8.09 -51.93 -0.42 0.13 16 48 H 0.39 10.46 7.66 -40.82 -0.31 10.14 16 49 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 50 H 0.12 1.81 8.06 -52.49 -0.42 1.39 16 51 H 0.12 1.26 8.06 -52.49 -0.42 0.84 16 LS Contribution 415.40 15.07 6.26 6.26 Total: -1.00 -32.87 415.40 -9.13 -42.00 By element: Atomic # 1 Polarization: 16.52 SS G_CDS: -8.68 Total: 7.84 kcal Atomic # 6 Polarization: -7.34 SS G_CDS: -1.45 Total: -8.79 kcal Atomic # 7 Polarization: -52.96 SS G_CDS: 0.05 Total: -52.91 kcal Atomic # 8 Polarization: -11.35 SS G_CDS: -0.28 Total: -11.63 kcal Atomic # 14 Polarization: 22.26 SS G_CDS: -5.02 Total: 17.23 kcal Total LS contribution 6.26 Total: 6.26 kcal Total: -32.87 -9.13 -42.00 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001666333356.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.790 kcal (2) G-P(sol) polarization free energy of solvation -32.875 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.665 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.129 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.004 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.794 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds