Wall clock time and date at job start Tue Mar 31 2020 17:55:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.42901 * 113.99960 * 2 1 4 4 C 1.52997 * 109.47149 * 180.02562 * 3 2 1 5 5 H 1.09002 * 109.47153 * 54.99855 * 4 3 2 6 6 C 1.53002 * 109.46817 * 295.00086 * 4 3 2 7 7 C 1.52992 * 109.47482 * 175.00071 * 4 3 2 8 8 H 1.09002 * 109.47103 * 59.99753 * 7 4 3 9 9 C 1.52997 * 109.47482 * 179.97438 * 7 4 3 10 10 C 1.50708 * 109.47025 * 300.00184 * 7 4 3 11 11 O 1.21282 * 119.99544 * 359.97438 * 10 7 4 12 12 N 1.34774 * 120.00011 * 179.97438 * 10 7 4 13 13 C 1.46500 * 119.99881 * 179.97438 * 12 10 7 14 14 C 1.50697 * 109.46896 * 180.02562 * 13 12 10 15 15 C 1.38242 * 119.99879 * 269.72631 * 14 13 12 16 16 C 1.38235 * 120.00087 * 179.77055 * 15 14 13 17 17 C 1.38239 * 119.99660 * 0.48170 * 16 15 14 18 18 C 1.50700 * 119.99687 * 179.77270 * 17 16 15 19 19 N 1.46510 * 109.46782 * 270.02049 * 18 17 16 20 20 C 1.36939 * 119.99609 * 180.02562 * 19 18 17 21 21 H 1.07998 * 120.00164 * 0.02562 * 20 19 18 22 22 C 1.38815 * 119.99727 * 179.97438 * 20 19 18 23 23 N 1.31621 * 119.99659 * 179.97438 * 22 20 19 24 24 Si 1.86798 * 120.00003 * 0.02562 * 22 20 19 25 25 H 1.48498 * 109.47398 * 89.99621 * 24 22 20 26 26 H 1.48499 * 109.47045 * 209.99935 * 24 22 20 27 27 H 1.48501 * 109.47083 * 329.99666 * 24 22 20 28 28 C 1.38231 * 120.00086 * 359.79409 * 17 16 15 29 29 C 1.38227 * 120.00511 * 90.00343 * 14 13 12 30 30 H 1.08993 * 109.47100 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.46893 * 300.00337 * 1 2 3 32 32 H 1.09000 * 109.47014 * 59.99995 * 1 2 3 33 33 H 1.09000 * 109.47006 * 59.99852 * 3 2 1 34 34 H 1.08998 * 109.46728 * 300.00161 * 3 2 1 35 35 H 1.08996 * 109.47407 * 60.00219 * 6 4 3 36 36 H 1.09000 * 109.46986 * 179.97438 * 6 4 3 37 37 H 1.09002 * 109.47596 * 299.99825 * 6 4 3 38 38 H 1.09002 * 109.47153 * 59.99783 * 9 7 4 39 39 H 1.09001 * 109.46832 * 299.99974 * 9 7 4 40 40 H 1.09004 * 109.47261 * 179.97438 * 9 7 4 41 41 H 0.96998 * 120.00125 * 0.02562 * 12 10 7 42 42 H 1.09002 * 109.47092 * 300.00020 * 13 12 10 43 43 H 1.09000 * 109.47175 * 59.99978 * 13 12 10 44 44 H 1.08000 * 119.99848 * 359.97438 * 15 14 13 45 45 H 1.07997 * 120.00173 * 180.25158 * 16 15 14 46 46 H 1.08992 * 109.47479 * 30.01849 * 18 17 16 47 47 H 1.09004 * 109.46954 * 150.02525 * 18 17 16 48 48 H 0.96998 * 119.99923 * 0.02562 * 19 18 17 49 49 H 0.97001 * 119.99271 * 179.97438 * 23 22 20 50 50 H 1.08002 * 119.99827 * 179.97438 * 28 17 16 51 51 H 1.08008 * 119.99724 * 0.02562 * 29 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1847 -0.0006 5 1 3.8508 0.5685 -0.8427 6 6 3.9962 0.5364 1.3064 7 6 4.1574 2.5769 -0.1263 8 1 3.8420 3.1930 0.7157 9 6 5.6826 2.4561 -0.1263 10 6 3.7034 3.2154 -1.4138 11 8 2.9565 2.6157 -2.1577 12 7 4.1275 4.4528 -1.7384 13 6 3.6867 5.0733 -2.9902 14 6 4.2992 6.4446 -3.1139 15 6 3.6342 7.5467 -2.6094 16 6 4.1982 8.8040 -2.7187 17 6 5.4224 8.9606 -3.3413 18 6 6.0349 10.3320 -3.4650 19 7 5.5940 10.9525 -4.7168 20 6 6.0257 12.2094 -5.0471 21 1 6.6915 12.7431 -4.3850 22 6 5.6085 12.7972 -6.2334 23 7 6.0231 14.0055 -6.5506 24 14 4.4575 11.8739 -7.3789 25 1 3.0499 12.1824 -7.0205 26 1 4.7144 12.2914 -8.7807 27 1 4.6935 10.4138 -7.2463 28 6 6.0847 7.8594 -3.8508 29 6 5.5231 6.6014 -3.7369 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 1.6886 1.8464 0.8900 34 1 1.6886 1.8463 -0.8900 35 1 3.5533 -0.4554 1.3960 36 1 5.0828 0.4499 1.3058 37 1 3.6809 1.1525 2.1485 38 1 5.9982 1.8398 -0.9682 39 1 6.0104 1.9945 0.8051 40 1 6.1256 3.4480 -0.2164 41 1 4.7252 4.9323 -1.1436 42 1 4.0028 4.4573 -3.8321 43 1 2.6001 5.1589 -2.9903 44 1 2.6757 7.4248 -2.1270 45 1 3.6806 9.6644 -2.3210 46 1 5.7192 10.9482 -2.6232 47 1 7.1215 10.2460 -3.4651 48 1 4.9964 10.4731 -5.3116 49 1 5.7317 14.4160 -7.3797 50 1 7.0409 7.9819 -4.3376 51 1 6.0403 5.7410 -4.1354 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001666333357.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:55:18 Heat of formation + Delta-G solvation = -58.796499 kcal Electronic energy + Delta-G solvation = -27881.846444 eV Core-core repulsion = 23974.102108 eV Total energy + Delta-G solvation = -3907.744336 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -40.62571 -39.42051 -38.18088 -36.08068 -35.58423 -34.53759 -32.28533 -31.09910 -30.88878 -30.23482 -27.81939 -27.25635 -26.39138 -24.78128 -23.88695 -22.65837 -22.11744 -21.35115 -20.66975 -20.04067 -17.89241 -17.77785 -16.76164 -16.40567 -16.19250 -15.93609 -15.67928 -15.48591 -15.01438 -14.80033 -14.64779 -14.37384 -14.11630 -13.71629 -13.66131 -13.39117 -13.29520 -13.03052 -12.82064 -12.64605 -12.48581 -12.39127 -12.25239 -12.09828 -12.02592 -11.80951 -11.57573 -11.52857 -11.16105 -10.99846 -10.94897 -10.84776 -10.67863 -10.20885 -10.15720 -9.70384 -9.64249 -9.31646 -8.96545 -8.86317 -8.61731 -7.29629 -5.81402 -3.17777 1.22234 1.46522 2.31124 2.93866 3.35536 3.39652 3.42760 3.43309 3.83275 4.29231 4.34010 4.45923 4.53690 4.55851 4.75518 4.80820 4.90340 4.93393 5.01386 5.02862 5.06539 5.09682 5.18381 5.18721 5.23207 5.32493 5.35425 5.41549 5.44312 5.48500 5.51888 5.56908 5.61312 5.68637 5.69162 5.70055 5.89297 5.98934 6.00878 6.00970 6.11946 6.32597 6.45015 6.46571 6.53406 6.90069 6.92779 7.04427 7.19048 7.90810 7.93414 8.37258 9.15630 9.87877 10.07544 11.36624 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.025143 B = 0.001809 C = 0.001743 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1113.356164 B =15474.035993 C =16060.285094 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.391 6.391 3 C 0.053 3.947 4 C -0.069 4.069 5 H 0.086 0.914 6 C -0.146 4.146 7 C -0.106 4.106 8 H 0.099 0.901 9 C -0.146 4.146 10 C 0.513 3.487 11 O -0.536 6.536 12 N -0.723 5.723 13 C 0.165 3.835 14 C -0.123 4.123 15 C -0.104 4.104 16 C -0.108 4.108 17 C -0.071 4.071 18 C 0.189 3.811 19 N -0.750 5.750 20 C -0.248 4.248 21 H 0.091 0.909 22 C 0.007 3.993 23 N -0.932 5.932 24 Si 0.883 3.117 25 H -0.283 1.283 26 H -0.290 1.290 27 H -0.277 1.277 28 C -0.107 4.107 29 C -0.104 4.104 30 H 0.083 0.917 31 H 0.037 0.963 32 H 0.041 0.959 33 H 0.038 0.962 34 H 0.079 0.921 35 H 0.065 0.935 36 H 0.059 0.941 37 H 0.053 0.947 38 H 0.063 0.937 39 H 0.073 0.927 40 H 0.063 0.937 41 H 0.402 0.598 42 H 0.075 0.925 43 H 0.074 0.926 44 H 0.120 0.880 45 H 0.126 0.874 46 H 0.037 0.963 47 H 0.037 0.963 48 H 0.363 0.637 49 H 0.260 0.740 50 H 0.126 0.874 51 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.332 -27.861 17.443 33.301 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.310 6.310 3 C -0.023 4.023 4 C -0.088 4.088 5 H 0.104 0.896 6 C -0.203 4.203 7 C -0.127 4.127 8 H 0.117 0.883 9 C -0.203 4.203 10 C 0.299 3.701 11 O -0.413 6.413 12 N -0.374 5.374 13 C 0.042 3.958 14 C -0.124 4.124 15 C -0.123 4.123 16 C -0.126 4.126 17 C -0.071 4.071 18 C 0.062 3.938 19 N -0.396 5.396 20 C -0.378 4.378 21 H 0.109 0.891 22 C -0.189 4.189 23 N -0.580 5.580 24 Si 0.713 3.287 25 H -0.210 1.210 26 H -0.216 1.216 27 H -0.203 1.203 28 C -0.126 4.126 29 C -0.122 4.122 30 H 0.102 0.898 31 H 0.056 0.944 32 H 0.060 0.940 33 H 0.056 0.944 34 H 0.096 0.904 35 H 0.084 0.916 36 H 0.078 0.922 37 H 0.072 0.928 38 H 0.082 0.918 39 H 0.092 0.908 40 H 0.082 0.918 41 H 0.237 0.763 42 H 0.093 0.907 43 H 0.092 0.908 44 H 0.138 0.862 45 H 0.144 0.856 46 H 0.055 0.945 47 H 0.055 0.945 48 H 0.196 0.804 49 H 0.070 0.930 50 H 0.144 0.856 51 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -5.641 -28.216 16.900 33.370 hybrid contribution -0.793 0.117 -0.710 1.071 sum -6.433 -28.099 16.189 33.061 Atomic orbital electron populations 1.22694 0.81265 1.02459 0.99910 1.87810 1.19442 1.28271 1.95472 1.22925 0.93308 0.84837 1.01236 1.20869 0.93541 0.94534 0.99857 0.89582 1.21866 1.01119 1.01361 0.96003 1.21344 0.97989 0.97363 0.96012 0.88306 1.21831 0.92210 1.02818 1.03443 1.20714 0.80337 0.81081 0.87923 1.90668 1.35822 1.62556 1.52250 1.46176 1.50739 1.17035 1.23476 1.20162 0.99022 0.90107 0.86517 1.19711 0.96192 0.94212 1.02296 1.21014 0.99495 0.92240 0.99516 1.21170 0.95202 0.97107 0.99143 1.20449 0.94575 0.96490 0.95618 1.19674 0.96597 0.87264 0.90217 1.42685 1.58425 1.17628 1.20856 1.19058 1.24317 0.90251 1.04130 0.89076 1.24657 1.00109 0.96304 0.97817 1.69702 1.48553 1.14412 1.25288 0.86562 0.81516 0.79522 0.81064 1.20994 1.21616 1.20280 1.21169 1.00500 0.91881 0.99012 1.21014 0.94904 0.97397 0.98902 0.89828 0.94398 0.94043 0.94350 0.90358 0.91610 0.92233 0.92830 0.91799 0.90783 0.91807 0.76284 0.90718 0.90775 0.86240 0.85598 0.94500 0.94547 0.80446 0.92978 0.85617 0.86210 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 11.01 101.05 1.11 1.36 16 2 O -0.39 -4.04 10.24 -35.23 -0.36 -4.40 16 3 C 0.05 0.49 5.05 37.16 0.19 0.68 16 4 C -0.07 -0.55 1.85 -90.62 -0.17 -0.71 16 5 H 0.09 0.83 8.10 -51.93 -0.42 0.41 16 6 C -0.15 -0.91 8.74 37.16 0.32 -0.59 16 7 C -0.11 -0.69 2.32 -91.77 -0.21 -0.90 16 8 H 0.10 0.50 8.14 -51.93 -0.42 0.07 16 9 C -0.15 -0.73 8.74 37.16 0.32 -0.40 16 10 C 0.51 4.75 6.83 -10.98 -0.08 4.67 16 11 O -0.54 -6.91 13.67 5.56 0.08 -6.83 16 12 N -0.72 -5.88 5.44 -61.47 -0.33 -6.21 16 13 C 0.16 1.60 5.80 -5.20 -0.03 1.57 16 14 C -0.12 -1.34 5.25 -104.63 -0.55 -1.89 16 15 C -0.10 -1.20 9.70 -39.58 -0.38 -1.59 16 16 C -0.11 -1.48 9.70 -39.58 -0.38 -1.87 16 17 C -0.07 -1.10 5.25 -104.62 -0.55 -1.64 16 18 C 0.19 3.57 6.38 -5.19 -0.03 3.53 16 19 N -0.75 -17.74 5.40 -61.08 -0.33 -18.07 16 20 C -0.25 -6.98 10.47 -15.06 -0.16 -7.14 16 21 H 0.09 2.72 8.06 -52.49 -0.42 2.30 16 22 C 0.01 0.21 5.50 -17.43 -0.10 0.11 16 23 N -0.93 -29.12 13.97 55.49 0.78 -28.35 16 24 Si 0.88 22.21 27.74 -169.99 -4.71 17.49 16 25 H -0.28 -7.07 7.11 56.52 0.40 -6.67 16 26 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 27 H -0.28 -6.63 6.52 56.52 0.37 -6.26 16 28 C -0.11 -1.48 9.70 -39.59 -0.38 -1.87 16 29 C -0.10 -1.20 9.70 -39.59 -0.38 -1.59 16 30 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.04 0.24 8.14 -51.93 -0.42 -0.18 16 32 H 0.04 0.31 8.14 -51.93 -0.42 -0.11 16 33 H 0.04 0.31 8.14 -51.93 -0.42 -0.11 16 34 H 0.08 0.88 5.41 -51.93 -0.28 0.60 16 35 H 0.06 0.48 7.82 -51.93 -0.41 0.07 16 36 H 0.06 0.30 6.43 -51.93 -0.33 -0.04 16 37 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 38 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 39 H 0.07 0.29 6.43 -51.93 -0.33 -0.05 16 40 H 0.06 0.27 7.57 -51.93 -0.39 -0.12 16 41 H 0.40 2.56 7.88 -40.82 -0.32 2.24 16 42 H 0.07 0.77 8.08 -51.93 -0.42 0.35 16 43 H 0.07 0.75 8.08 -51.93 -0.42 0.33 16 44 H 0.12 1.15 8.06 -52.49 -0.42 0.73 16 45 H 0.13 1.67 8.06 -52.49 -0.42 1.25 16 46 H 0.04 0.69 8.08 -51.93 -0.42 0.27 16 47 H 0.04 0.68 8.09 -51.93 -0.42 0.26 16 48 H 0.36 8.55 5.52 -40.82 -0.23 8.32 16 49 H 0.26 7.74 8.31 -40.82 -0.34 7.40 16 50 H 0.13 1.69 8.06 -52.49 -0.42 1.27 16 51 H 0.12 1.17 8.06 -52.48 -0.42 0.75 16 LS Contribution 412.29 15.07 6.21 6.21 Total: -1.00 -33.60 412.29 -8.77 -42.37 By element: Atomic # 1 Polarization: 14.67 SS G_CDS: -8.64 Total: 6.03 kcal Atomic # 6 Polarization: -6.79 SS G_CDS: -1.46 Total: -8.25 kcal Atomic # 7 Polarization: -52.74 SS G_CDS: 0.11 Total: -52.63 kcal Atomic # 8 Polarization: -10.95 SS G_CDS: -0.28 Total: -11.23 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -4.71 Total: 17.49 kcal Total LS contribution 6.21 Total: 6.21 kcal Total: -33.60 -8.77 -42.37 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001666333357.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.424 kcal (2) G-P(sol) polarization free energy of solvation -33.603 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.027 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.770 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.373 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.796 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds