Wall clock time and date at job start Tue Mar 31 2020 17:55:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.42901 * 113.99960 * 2 1 4 4 C 1.52997 * 109.47149 * 180.02562 * 3 2 1 5 5 H 1.09002 * 109.47153 * 54.99855 * 4 3 2 6 6 C 1.53002 * 109.46817 * 295.00086 * 4 3 2 7 7 C 1.52992 * 109.47482 * 175.00071 * 4 3 2 8 8 H 1.09002 * 109.47103 * 59.99753 * 7 4 3 9 9 C 1.52997 * 109.47482 * 179.97438 * 7 4 3 10 10 C 1.50708 * 109.47025 * 300.00184 * 7 4 3 11 11 O 1.21282 * 119.99544 * 359.97438 * 10 7 4 12 12 N 1.34774 * 120.00011 * 179.97438 * 10 7 4 13 13 C 1.46500 * 119.99881 * 179.97438 * 12 10 7 14 14 C 1.50697 * 109.46896 * 180.02562 * 13 12 10 15 15 C 1.38242 * 119.99879 * 269.72631 * 14 13 12 16 16 C 1.38235 * 120.00087 * 179.77055 * 15 14 13 17 17 C 1.38239 * 119.99660 * 0.48170 * 16 15 14 18 18 C 1.50700 * 119.99687 * 179.77270 * 17 16 15 19 19 N 1.46510 * 109.46782 * 270.02049 * 18 17 16 20 20 C 1.36939 * 119.99609 * 180.02562 * 19 18 17 21 21 H 1.07998 * 120.00164 * 0.02562 * 20 19 18 22 22 C 1.38815 * 119.99727 * 179.97438 * 20 19 18 23 23 N 1.31621 * 119.99659 * 179.97438 * 22 20 19 24 24 Si 1.86798 * 120.00003 * 0.02562 * 22 20 19 25 25 H 1.48498 * 109.47398 * 89.99621 * 24 22 20 26 26 H 1.48499 * 109.47045 * 209.99935 * 24 22 20 27 27 H 1.48501 * 109.47083 * 329.99666 * 24 22 20 28 28 C 1.38231 * 120.00086 * 359.79409 * 17 16 15 29 29 C 1.38227 * 120.00511 * 90.00343 * 14 13 12 30 30 H 1.08993 * 109.47100 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.46893 * 300.00337 * 1 2 3 32 32 H 1.09000 * 109.47014 * 59.99995 * 1 2 3 33 33 H 1.09000 * 109.47006 * 59.99852 * 3 2 1 34 34 H 1.08998 * 109.46728 * 300.00161 * 3 2 1 35 35 H 1.08996 * 109.47407 * 60.00219 * 6 4 3 36 36 H 1.09000 * 109.46986 * 179.97438 * 6 4 3 37 37 H 1.09002 * 109.47596 * 299.99825 * 6 4 3 38 38 H 1.09002 * 109.47153 * 59.99783 * 9 7 4 39 39 H 1.09001 * 109.46832 * 299.99974 * 9 7 4 40 40 H 1.09004 * 109.47261 * 179.97438 * 9 7 4 41 41 H 0.96998 * 120.00125 * 0.02562 * 12 10 7 42 42 H 1.09002 * 109.47092 * 300.00020 * 13 12 10 43 43 H 1.09000 * 109.47175 * 59.99978 * 13 12 10 44 44 H 1.08000 * 119.99848 * 359.97438 * 15 14 13 45 45 H 1.07997 * 120.00173 * 180.25158 * 16 15 14 46 46 H 1.08992 * 109.47479 * 30.01849 * 18 17 16 47 47 H 1.09004 * 109.46954 * 150.02525 * 18 17 16 48 48 H 0.96998 * 119.99923 * 0.02562 * 19 18 17 49 49 H 0.97001 * 119.99271 * 179.97438 * 23 22 20 50 50 H 1.08002 * 119.99827 * 179.97438 * 28 17 16 51 51 H 1.08008 * 119.99724 * 0.02562 * 29 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1847 -0.0006 5 1 3.8508 0.5685 -0.8427 6 6 3.9962 0.5364 1.3064 7 6 4.1574 2.5769 -0.1263 8 1 3.8420 3.1930 0.7157 9 6 5.6826 2.4561 -0.1263 10 6 3.7034 3.2154 -1.4138 11 8 2.9565 2.6157 -2.1577 12 7 4.1275 4.4528 -1.7384 13 6 3.6867 5.0733 -2.9902 14 6 4.2992 6.4446 -3.1139 15 6 3.6342 7.5467 -2.6094 16 6 4.1982 8.8040 -2.7187 17 6 5.4224 8.9606 -3.3413 18 6 6.0349 10.3320 -3.4650 19 7 5.5940 10.9525 -4.7168 20 6 6.0257 12.2094 -5.0471 21 1 6.6915 12.7431 -4.3850 22 6 5.6085 12.7972 -6.2334 23 7 6.0231 14.0055 -6.5506 24 14 4.4575 11.8739 -7.3789 25 1 3.0499 12.1824 -7.0205 26 1 4.7144 12.2914 -8.7807 27 1 4.6935 10.4138 -7.2463 28 6 6.0847 7.8594 -3.8508 29 6 5.5231 6.6014 -3.7369 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 1.6886 1.8464 0.8900 34 1 1.6886 1.8463 -0.8900 35 1 3.5533 -0.4554 1.3960 36 1 5.0828 0.4499 1.3058 37 1 3.6809 1.1525 2.1485 38 1 5.9982 1.8398 -0.9682 39 1 6.0104 1.9945 0.8051 40 1 6.1256 3.4480 -0.2164 41 1 4.7252 4.9323 -1.1436 42 1 4.0028 4.4573 -3.8321 43 1 2.6001 5.1589 -2.9903 44 1 2.6757 7.4248 -2.1270 45 1 3.6806 9.6644 -2.3210 46 1 5.7192 10.9482 -2.6232 47 1 7.1215 10.2460 -3.4651 48 1 4.9964 10.4731 -5.3116 49 1 5.7317 14.4160 -7.3797 50 1 7.0409 7.9819 -4.3376 51 1 6.0403 5.7410 -4.1354 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001666333357.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:55:17 Heat of formation + Delta-G solvation = -80.698178 kcal Electronic energy + Delta-G solvation = -27882.796172 eV Core-core repulsion = 23974.102108 eV Total energy + Delta-G solvation = -3908.694064 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.35340 -40.40717 -38.89275 -37.13915 -36.49094 -35.81030 -33.89466 -32.39536 -31.87390 -31.13551 -28.71431 -28.16024 -27.00176 -26.00374 -24.68372 -23.80369 -23.64534 -22.07459 -21.76209 -20.68903 -19.87955 -18.49941 -17.46502 -17.18778 -16.91966 -16.75355 -16.73050 -16.62204 -16.32474 -15.99909 -15.60959 -15.44054 -15.06112 -14.78790 -14.62680 -14.36533 -14.29779 -14.06724 -14.05215 -13.71914 -13.34398 -13.27251 -13.18038 -13.13120 -12.88035 -12.86083 -12.54783 -12.37217 -12.20636 -12.17130 -11.93845 -11.92239 -11.79261 -11.67245 -11.54362 -11.04432 -10.88964 -10.43148 -10.06379 -9.84443 -9.66238 -9.34595 -8.05891 -5.39806 0.20798 0.48095 1.36120 1.38051 1.45771 1.61955 2.20672 2.45215 2.82149 2.84188 3.25569 3.62253 3.72297 3.82513 3.85515 3.87704 3.91270 4.00911 4.12289 4.20133 4.26754 4.38275 4.42384 4.47086 4.49838 4.53088 4.54686 4.68030 4.69230 4.72007 4.80747 4.87493 4.87845 4.89799 4.93055 5.01936 5.05378 5.10129 5.17971 5.19286 5.35895 5.41354 5.43889 5.50633 5.58514 5.72130 5.77813 6.03376 6.17899 6.24978 6.54261 7.03642 7.23956 7.78776 7.98621 9.15303 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.025143 B = 0.001809 C = 0.001743 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1113.356164 B =15474.035993 C =16060.285094 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.413 6.413 3 C 0.053 3.947 4 C -0.068 4.068 5 H 0.061 0.939 6 C -0.140 4.140 7 C -0.098 4.098 8 H 0.122 0.878 9 C -0.143 4.143 10 C 0.511 3.489 11 O -0.576 6.576 12 N -0.712 5.712 13 C 0.170 3.830 14 C -0.107 4.107 15 C -0.098 4.098 16 C -0.114 4.114 17 C -0.092 4.092 18 C 0.188 3.812 19 N -0.753 5.753 20 C -0.238 4.238 21 H 0.060 0.940 22 C -0.059 4.059 23 N -0.980 5.980 24 Si 0.953 3.047 25 H -0.277 1.277 26 H -0.293 1.293 27 H -0.256 1.256 28 C -0.115 4.115 29 C -0.098 4.098 30 H 0.097 0.903 31 H 0.051 0.949 32 H 0.036 0.964 33 H 0.052 0.948 34 H 0.056 0.944 35 H 0.051 0.949 36 H 0.074 0.926 37 H 0.065 0.935 38 H 0.052 0.948 39 H 0.090 0.910 40 H 0.076 0.924 41 H 0.414 0.586 42 H 0.071 0.929 43 H 0.072 0.928 44 H 0.142 0.858 45 H 0.126 0.874 46 H 0.036 0.964 47 H 0.035 0.965 48 H 0.365 0.635 49 H 0.259 0.741 50 H 0.124 0.876 51 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.079 -30.258 18.750 36.111 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.332 6.332 3 C -0.024 4.024 4 C -0.087 4.087 5 H 0.080 0.920 6 C -0.197 4.197 7 C -0.119 4.119 8 H 0.140 0.860 9 C -0.201 4.201 10 C 0.299 3.701 11 O -0.456 6.456 12 N -0.364 5.364 13 C 0.047 3.953 14 C -0.108 4.108 15 C -0.116 4.116 16 C -0.133 4.133 17 C -0.092 4.092 18 C 0.063 3.937 19 N -0.398 5.398 20 C -0.368 4.368 21 H 0.078 0.922 22 C -0.251 4.251 23 N -0.631 5.631 24 Si 0.780 3.220 25 H -0.203 1.203 26 H -0.220 1.220 27 H -0.181 1.181 28 C -0.133 4.133 29 C -0.116 4.116 30 H 0.115 0.885 31 H 0.069 0.931 32 H 0.055 0.945 33 H 0.070 0.930 34 H 0.074 0.926 35 H 0.071 0.929 36 H 0.093 0.907 37 H 0.084 0.916 38 H 0.071 0.929 39 H 0.108 0.892 40 H 0.094 0.906 41 H 0.251 0.749 42 H 0.089 0.911 43 H 0.091 0.909 44 H 0.160 0.840 45 H 0.144 0.856 46 H 0.054 0.946 47 H 0.053 0.947 48 H 0.198 0.802 49 H 0.068 0.932 50 H 0.142 0.858 51 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -6.370 -30.641 18.260 36.233 hybrid contribution -0.548 0.805 -1.010 1.403 sum -6.917 -29.836 17.250 35.151 Atomic orbital electron populations 1.22853 0.80122 1.03576 1.00300 1.87784 1.20882 1.28987 1.95552 1.22944 0.94254 0.84430 1.00723 1.20860 0.92749 0.95239 0.99877 0.92008 1.21818 1.01960 1.00636 0.95317 1.21354 0.98923 0.96487 0.95102 0.85987 1.21852 0.90796 1.03551 1.03862 1.21210 0.79531 0.80946 0.88398 1.90666 1.37659 1.63543 1.53702 1.46047 1.50558 1.16778 1.23052 1.20037 0.98841 0.89301 0.87167 1.19813 0.95570 0.94567 1.00828 1.21209 1.00165 0.91312 0.98935 1.21222 0.94674 0.98207 0.99193 1.20145 0.95870 0.94852 0.98373 1.19734 0.96668 0.89318 0.87984 1.42705 1.58330 1.16250 1.22542 1.19064 1.22778 0.91700 1.03294 0.92161 1.25461 1.02490 0.97316 0.99846 1.69875 1.50717 1.16459 1.26027 0.85442 0.79193 0.79159 0.78205 1.20349 1.22004 1.18118 1.21215 1.00624 0.92336 0.99166 1.21199 0.95046 0.97101 0.98293 0.88459 0.93077 0.94535 0.92977 0.92593 0.92942 0.90739 0.91556 0.92925 0.89162 0.90556 0.74929 0.91075 0.90934 0.83990 0.85629 0.94597 0.94727 0.80189 0.93231 0.85766 0.84090 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.40 11.01 113.37 1.25 1.65 16 2 O -0.41 -8.36 10.24 -148.98 -1.53 -9.89 16 3 C 0.05 0.94 5.05 71.98 0.36 1.30 16 4 C -0.07 -0.99 1.85 -10.80 -0.02 -1.01 16 5 H 0.06 1.19 8.10 -2.39 -0.02 1.17 16 6 C -0.14 -1.46 8.74 71.98 0.63 -0.83 16 7 C -0.10 -1.03 2.32 -11.54 -0.03 -1.06 16 8 H 0.12 0.77 8.14 -2.39 -0.02 0.75 16 9 C -0.14 -1.01 8.74 71.98 0.63 -0.38 16 10 C 0.51 8.51 6.83 87.66 0.60 9.11 16 11 O -0.58 -14.50 13.67 -3.04 -0.04 -14.54 16 12 N -0.71 -9.60 5.44 -466.78 -2.54 -12.14 16 13 C 0.17 2.83 5.80 85.63 0.50 3.33 16 14 C -0.11 -1.99 5.25 -19.87 -0.10 -2.09 16 15 C -0.10 -1.96 9.70 22.27 0.22 -1.74 16 16 C -0.11 -2.92 9.70 22.27 0.22 -2.71 16 17 C -0.09 -2.72 5.25 -19.87 -0.10 -2.83 16 18 C 0.19 7.08 6.38 85.63 0.55 7.63 16 19 N -0.75 -35.37 5.40 -347.16 -1.87 -37.24 16 20 C -0.24 -13.61 10.47 84.03 0.88 -12.73 16 21 H 0.06 3.75 8.06 -2.91 -0.02 3.72 16 22 C -0.06 -3.51 5.50 84.86 0.47 -3.04 16 23 N -0.98 -62.79 13.97 21.65 0.30 -62.49 16 24 Si 0.95 45.89 27.74 68.60 1.90 47.79 16 25 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 26 H -0.29 -14.22 7.11 99.48 0.71 -13.52 16 27 H -0.26 -11.35 6.52 99.48 0.65 -10.70 16 28 C -0.11 -2.96 9.70 22.27 0.22 -2.75 16 29 C -0.10 -1.99 9.70 22.27 0.22 -1.77 16 30 H 0.10 1.07 8.14 -2.39 -0.02 1.05 16 31 H 0.05 0.58 8.14 -2.39 -0.02 0.56 16 32 H 0.04 0.55 8.14 -2.39 -0.02 0.53 16 33 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 34 H 0.06 1.26 5.41 -2.39 -0.01 1.25 16 35 H 0.05 0.70 7.82 -2.39 -0.02 0.68 16 36 H 0.07 0.54 6.43 -2.39 -0.02 0.53 16 37 H 0.07 0.53 8.14 -2.39 -0.02 0.51 16 38 H 0.05 0.51 8.14 -2.39 -0.02 0.49 16 39 H 0.09 0.38 6.43 -2.39 -0.02 0.36 16 40 H 0.08 0.37 7.57 -2.38 -0.02 0.35 16 41 H 0.41 3.80 7.88 -92.71 -0.73 3.07 16 42 H 0.07 1.29 8.08 -2.39 -0.02 1.27 16 43 H 0.07 1.29 8.08 -2.39 -0.02 1.27 16 44 H 0.14 2.22 8.06 -2.91 -0.02 2.19 16 45 H 0.13 3.15 8.06 -2.91 -0.02 3.13 16 46 H 0.04 1.35 8.08 -2.39 -0.02 1.33 16 47 H 0.03 1.31 8.09 -2.39 -0.02 1.29 16 48 H 0.37 16.69 5.52 -92.71 -0.51 16.18 16 49 H 0.26 15.77 8.31 -92.71 -0.77 15.00 16 50 H 0.12 3.18 8.06 -2.91 -0.02 3.16 16 51 H 0.14 2.27 8.06 -2.91 -0.02 2.24 16 Total: -1.00 -74.45 412.29 2.31 -72.14 By element: Atomic # 1 Polarization: 26.67 SS G_CDS: -0.38 Total: 26.29 kcal Atomic # 6 Polarization: -16.38 SS G_CDS: 6.47 Total: -9.91 kcal Atomic # 7 Polarization: -107.76 SS G_CDS: -4.11 Total: -111.87 kcal Atomic # 8 Polarization: -22.86 SS G_CDS: -1.57 Total: -24.43 kcal Atomic # 14 Polarization: 45.89 SS G_CDS: 1.90 Total: 47.79 kcal Total: -74.45 2.31 -72.14 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001666333357.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.562 kcal (2) G-P(sol) polarization free energy of solvation -74.447 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.009 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.311 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.136 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.698 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds