Wall clock time and date at job start Tue Mar 31 2020 18:47:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46507 * 109.47296 * 2 1 4 4 C 1.46501 * 119.99895 * 95.07350 * 3 2 1 5 5 C 1.53000 * 109.47305 * 266.73872 * 4 3 2 6 6 N 1.46902 * 109.47088 * 180.02562 * 5 4 3 7 7 C 1.46898 * 110.99902 * 179.97438 * 6 5 4 8 8 C 1.50702 * 109.46814 * 180.02562 * 7 6 5 9 9 C 1.38306 * 119.92749 * 269.72740 * 8 7 6 10 10 C 1.38099 * 120.06544 * 179.72646 * 9 8 7 11 11 C 1.38881 * 119.92933 * 0.56888 * 10 9 8 12 12 O 1.35760 * 120.06528 * 179.68098 * 11 10 9 13 13 C 1.34837 * 116.99430 * 185.95981 * 12 11 10 14 14 H 1.08001 * 120.00295 * 5.52611 * 13 12 11 15 15 C 1.38651 * 119.99683 * 185.52933 * 13 12 11 16 16 N 1.31559 * 119.99772 * 0.02562 * 15 13 12 17 17 Si 1.86796 * 119.99933 * 179.97438 * 15 13 12 18 18 H 1.48497 * 109.47264 * 0.02562 * 17 15 13 19 19 H 1.48504 * 109.47040 * 120.00163 * 17 15 13 20 20 H 1.48506 * 109.47447 * 239.99965 * 17 15 13 21 21 C 1.38871 * 119.86332 * 359.70604 * 11 10 9 22 22 C 1.38102 * 119.93321 * 359.97438 * 21 11 10 23 23 C 1.34772 * 119.99747 * 275.08509 * 3 2 1 24 24 O 1.21280 * 120.00511 * 4.74474 * 23 3 2 25 25 C 1.50702 * 119.99703 * 184.74952 * 23 3 2 26 26 C 1.52999 * 109.47405 * 66.65838 * 25 23 3 27 27 C 1.52998 * 109.47211 * 186.65748 * 25 23 3 28 28 H 1.08993 * 109.47306 * 304.96102 * 1 2 3 29 29 H 1.09003 * 109.46653 * 64.96392 * 1 2 3 30 30 H 1.09001 * 109.47306 * 184.95762 * 1 2 3 31 31 H 1.09001 * 109.47836 * 240.00069 * 2 1 3 32 32 H 1.09003 * 109.47204 * 119.99304 * 2 1 3 33 33 H 1.09002 * 109.46882 * 146.74013 * 4 3 2 34 34 H 1.08998 * 109.47262 * 26.74084 * 4 3 2 35 35 H 1.09002 * 109.47035 * 60.00235 * 5 4 3 36 36 H 1.08998 * 109.47133 * 300.00290 * 5 4 3 37 37 H 1.00906 * 110.99656 * 56.04576 * 6 5 4 38 38 H 1.09002 * 109.47175 * 299.99967 * 7 6 5 39 39 H 1.08998 * 109.46692 * 60.00384 * 7 6 5 40 40 H 1.07996 * 119.97018 * 359.97438 * 9 8 7 41 41 H 1.08005 * 120.03875 * 180.27179 * 10 9 8 42 42 H 0.97002 * 119.99439 * 180.02562 * 16 15 13 43 43 H 1.08002 * 120.03718 * 179.97438 * 21 11 10 44 44 H 1.07998 * 119.96662 * 180.02562 * 22 21 11 45 45 H 1.09003 * 109.47281 * 306.65607 * 25 23 3 46 46 H 1.08998 * 109.47065 * 306.57837 * 26 25 23 47 47 H 1.09004 * 109.46970 * 66.57468 * 26 25 23 48 48 H 1.08997 * 109.47207 * 186.57945 * 26 25 23 49 49 H 1.09005 * 109.47332 * 60.00023 * 27 25 23 50 50 H 1.08998 * 109.47388 * 179.97438 * 27 25 23 51 51 H 1.08995 * 109.47208 * 300.00056 * 27 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.3683 2.0345 1.2638 5 6 1.1580 2.8083 1.7903 6 7 1.5091 3.4637 3.0572 7 6 0.3686 4.2185 3.5932 8 6 0.7660 4.8759 4.8897 9 6 0.5833 4.2075 6.0867 10 6 0.9517 4.8050 7.2760 11 6 1.4953 6.0830 7.2702 12 8 1.8525 6.6756 8.4382 13 6 2.2576 7.9600 8.3741 14 1 2.2025 8.4976 7.4390 15 6 2.7450 8.5906 9.5087 16 7 2.8126 7.9355 10.6476 17 14 3.3069 10.3699 9.4198 18 1 3.1301 10.8762 8.0350 19 1 2.4968 11.1921 10.3541 20 1 4.7399 10.4561 9.7997 21 6 1.6723 6.7537 6.0671 22 6 1.3080 6.1482 4.8805 23 6 2.1454 2.0510 -1.1626 24 8 1.7751 1.5421 -2.1993 25 6 2.7478 3.4324 -1.1744 26 6 4.2246 3.3482 -0.7833 27 6 2.6252 4.0303 -2.5773 28 1 -0.3633 0.5888 0.8421 29 1 -0.3633 0.4349 -0.9312 30 1 -0.3634 -1.0238 0.0888 31 1 1.8934 -0.5138 -0.8900 32 1 1.8933 -0.5137 0.8901 33 1 3.1967 2.7236 1.0994 34 1 2.6627 1.2801 1.9934 35 1 0.3296 2.1191 1.9547 36 1 0.8637 3.5627 1.0607 37 1 2.3158 4.0594 2.9446 38 1 0.0689 4.9824 2.8758 39 1 -0.4654 3.5393 3.7705 40 1 0.1557 3.2158 6.0911 41 1 0.8128 4.2810 8.2101 42 1 3.1532 8.3769 11.4414 43 1 2.0944 7.7478 6.0593 44 1 1.4458 6.6691 3.9446 45 1 2.2188 4.0656 -0.4621 46 1 4.3199 2.8169 0.1637 47 1 4.7754 2.8133 -1.5570 48 1 4.6305 4.3542 -0.6779 49 1 1.5731 4.0903 -2.8560 50 1 3.0604 5.0295 -2.5858 51 1 3.1541 3.3972 -3.2897 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001668366167.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:47:16 Heat of formation + Delta-G solvation = -43.316832 kcal Electronic energy + Delta-G solvation = -28224.028200 eV Core-core repulsion = 24316.955112 eV Total energy + Delta-G solvation = -3907.073087 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -40.61173 -39.11277 -37.42512 -36.57260 -35.28060 -34.84676 -32.37708 -31.56767 -30.26210 -30.11173 -27.80318 -27.53858 -25.55252 -24.91872 -24.00793 -22.49130 -22.03758 -21.95151 -20.47207 -19.20882 -18.02187 -17.62901 -17.04984 -16.56565 -16.12907 -15.48849 -15.16675 -14.82513 -14.59509 -14.58161 -14.35436 -14.30848 -13.91415 -13.69011 -13.55686 -13.45596 -13.11480 -12.79186 -12.72305 -12.62329 -12.54213 -12.44115 -12.28068 -12.22487 -11.90001 -11.82872 -11.58293 -11.40140 -11.35451 -11.28127 -10.93031 -10.84159 -10.66019 -10.60916 -10.43839 -9.92424 -9.39228 -9.05082 -8.87284 -8.51150 -8.20086 -7.22108 -6.48461 -4.07231 2.19357 2.21959 2.33540 2.63683 3.09580 3.11084 3.16652 3.93607 3.97084 4.29863 4.46745 4.52435 4.60125 4.66072 4.75385 4.78182 4.93396 5.00119 5.07850 5.09351 5.13062 5.23336 5.24836 5.28738 5.32332 5.36435 5.41801 5.46851 5.48525 5.57491 5.62610 5.69678 5.70323 5.76924 5.84067 5.86389 5.90037 5.94597 6.18937 6.23304 6.39986 6.67405 6.84163 6.91537 7.02778 7.05092 7.22158 7.27383 7.38544 7.41749 7.80028 7.87837 7.96588 8.97314 9.67570 10.69584 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.018134 B = 0.001954 C = 0.001822 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1543.688643 B =14329.434416 C =15363.240011 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.113 3.887 3 N -0.611 5.611 4 C 0.095 3.905 5 C 0.039 3.961 6 N -0.682 5.682 7 C 0.121 3.879 8 C -0.187 4.187 9 C -0.051 4.051 10 C -0.195 4.195 11 C 0.156 3.844 12 O -0.178 6.178 13 C -0.391 4.391 14 H 0.092 0.908 15 C 0.039 3.961 16 N -0.861 5.861 17 Si 0.941 3.059 18 H -0.267 1.267 19 H -0.276 1.276 20 H -0.276 1.276 21 C -0.234 4.234 22 C -0.065 4.065 23 C 0.520 3.480 24 O -0.539 6.539 25 C -0.118 4.118 26 C -0.153 4.153 27 C -0.132 4.132 28 H 0.058 0.942 29 H 0.059 0.941 30 H 0.064 0.936 31 H 0.078 0.922 32 H 0.079 0.921 33 H 0.092 0.908 34 H 0.092 0.908 35 H 0.075 0.925 36 H 0.028 0.972 37 H 0.342 0.658 38 H 0.028 0.972 39 H 0.070 0.930 40 H 0.111 0.889 41 H 0.116 0.884 42 H 0.270 0.730 43 H 0.126 0.874 44 H 0.102 0.898 45 H 0.094 0.906 46 H 0.071 0.929 47 H 0.062 0.938 48 H 0.070 0.930 49 H 0.059 0.941 50 H 0.062 0.938 51 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.440 -10.604 -21.105 23.624 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.010 4.010 3 N -0.344 5.344 4 C -0.028 4.028 5 C -0.091 4.091 6 N -0.314 5.314 7 C -0.007 4.007 8 C -0.188 4.188 9 C -0.070 4.070 10 C -0.214 4.214 11 C 0.102 3.898 12 O -0.081 6.081 13 C -0.467 4.467 14 H 0.109 0.891 15 C -0.166 4.166 16 N -0.496 5.496 17 Si 0.766 3.234 18 H -0.191 1.191 19 H -0.201 1.201 20 H -0.201 1.201 21 C -0.254 4.254 22 C -0.084 4.084 23 C 0.308 3.692 24 O -0.416 6.416 25 C -0.139 4.139 26 C -0.210 4.210 27 C -0.190 4.190 28 H 0.077 0.923 29 H 0.078 0.922 30 H 0.083 0.917 31 H 0.096 0.904 32 H 0.097 0.903 33 H 0.110 0.890 34 H 0.110 0.890 35 H 0.094 0.906 36 H 0.046 0.954 37 H 0.160 0.840 38 H 0.046 0.954 39 H 0.089 0.911 40 H 0.129 0.871 41 H 0.134 0.866 42 H 0.080 0.920 43 H 0.144 0.856 44 H 0.120 0.880 45 H 0.112 0.888 46 H 0.089 0.911 47 H 0.081 0.919 48 H 0.089 0.911 49 H 0.078 0.922 50 H 0.081 0.919 51 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -0.689 -11.485 -20.809 23.778 hybrid contribution 0.209 1.732 -0.463 1.805 sum -0.480 -9.753 -21.273 23.407 Atomic orbital electron populations 1.22172 0.95856 1.02190 1.02551 1.21451 0.94672 0.81970 1.02863 1.47988 1.65802 1.14114 1.06484 1.21951 0.97494 0.98418 0.84901 1.22435 0.98303 0.97758 0.90627 1.60517 1.07956 1.36714 1.26165 1.20597 0.92357 0.94652 0.93132 1.19079 1.10225 0.95844 0.93677 1.20458 0.97453 0.97863 0.91218 1.20227 1.07857 0.95011 0.98307 1.19428 0.91957 0.91908 0.86509 1.84001 1.71659 1.26903 1.25504 1.21360 1.43209 0.84292 0.97869 0.89070 1.25299 0.96569 1.00292 0.94413 1.70050 1.42676 1.37000 0.99899 0.85650 0.78567 0.80431 0.78789 1.19125 1.20132 1.20119 1.21121 1.09741 1.02380 0.92111 1.20579 0.96967 0.94139 0.96704 1.20745 0.77839 0.87678 0.82941 1.90677 1.49333 1.69499 1.32097 1.21350 0.97977 0.93879 1.00676 1.22008 0.93492 1.03310 1.02215 1.21611 1.02696 1.00271 0.94393 0.92300 0.92185 0.91699 0.90397 0.90260 0.89049 0.89004 0.90643 0.95435 0.83988 0.95404 0.91130 0.87075 0.86563 0.92039 0.85646 0.87966 0.88756 0.91088 0.91918 0.91067 0.92207 0.91934 0.91831 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.32 10.20 37.16 0.38 -0.94 16 2 C 0.11 0.88 6.08 -4.04 -0.02 0.85 16 3 N -0.61 -5.13 2.49 -173.68 -0.43 -5.56 16 4 C 0.10 0.69 5.16 -4.04 -0.02 0.67 16 5 C 0.04 0.33 5.91 -3.82 -0.02 0.31 16 6 N -0.68 -7.15 6.49 -115.06 -0.75 -7.90 16 7 C 0.12 1.47 5.81 -4.98 -0.03 1.44 16 8 C -0.19 -2.96 5.40 -104.57 -0.56 -3.53 16 9 C -0.05 -0.88 9.69 -39.61 -0.38 -1.26 16 10 C -0.19 -4.01 9.99 -39.39 -0.39 -4.40 16 11 C 0.16 3.68 6.65 -39.11 -0.26 3.42 16 12 O -0.18 -4.99 9.76 0.00 0.00 -4.99 16 13 C -0.39 -10.74 9.44 30.89 0.29 -10.45 16 14 H 0.09 2.32 5.30 -52.49 -0.28 2.04 16 15 C 0.04 1.05 5.49 -17.52 -0.10 0.95 16 16 N -0.86 -24.95 13.67 55.48 0.76 -24.20 16 17 Si 0.94 20.17 29.55 -169.99 -5.02 15.15 16 18 H -0.27 -5.47 7.11 56.52 0.40 -5.07 16 19 H -0.28 -5.81 7.11 56.52 0.40 -5.40 16 20 H -0.28 -5.79 7.11 56.52 0.40 -5.39 16 21 C -0.23 -4.90 9.13 -39.40 -0.36 -5.26 16 22 C -0.07 -1.11 9.69 -39.61 -0.38 -1.50 16 23 C 0.52 5.27 6.92 -10.99 -0.08 5.20 16 24 O -0.54 -7.31 15.70 5.56 0.09 -7.22 16 25 C -0.12 -0.92 2.45 -91.77 -0.22 -1.14 16 26 C -0.15 -0.97 8.79 37.16 0.33 -0.64 16 27 C -0.13 -1.05 8.51 37.16 0.32 -0.73 16 28 H 0.06 0.46 6.69 -51.93 -0.35 0.11 16 29 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 31 H 0.08 0.68 7.65 -51.93 -0.40 0.28 16 32 H 0.08 0.48 7.81 -51.93 -0.41 0.08 16 33 H 0.09 0.58 4.15 -51.93 -0.22 0.36 16 34 H 0.09 0.65 7.81 -51.93 -0.41 0.24 16 35 H 0.08 0.68 6.69 -51.93 -0.35 0.34 16 36 H 0.03 0.24 7.08 -51.93 -0.37 -0.13 16 37 H 0.34 3.47 8.72 -39.29 -0.34 3.13 16 38 H 0.03 0.32 8.08 -51.93 -0.42 -0.10 16 39 H 0.07 0.84 8.08 -51.93 -0.42 0.42 16 40 H 0.11 1.64 8.06 -52.49 -0.42 1.21 16 41 H 0.12 2.33 8.06 -52.48 -0.42 1.90 16 42 H 0.27 7.14 8.31 -40.82 -0.34 6.80 16 43 H 0.13 2.65 5.72 -52.49 -0.30 2.35 16 44 H 0.10 1.47 8.06 -52.49 -0.42 1.05 16 45 H 0.09 0.67 6.67 -51.93 -0.35 0.33 16 46 H 0.07 0.42 5.25 -51.93 -0.27 0.15 16 47 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 48 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 49 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 50 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 51 H 0.06 0.55 8.03 -51.93 -0.42 0.14 16 LS Contribution 409.37 15.07 6.17 6.17 Total: -1.00 -31.60 409.37 -8.94 -40.54 By element: Atomic # 1 Polarization: 13.23 SS G_CDS: -8.22 Total: 5.01 kcal Atomic # 6 Polarization: -15.48 SS G_CDS: -1.53 Total: -17.00 kcal Atomic # 7 Polarization: -37.23 SS G_CDS: -0.42 Total: -37.65 kcal Atomic # 8 Polarization: -12.29 SS G_CDS: 0.09 Total: -12.21 kcal Atomic # 14 Polarization: 20.17 SS G_CDS: -5.02 Total: 15.15 kcal Total LS contribution 6.17 Total: 6.17 kcal Total: -31.60 -8.94 -40.54 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001668366167.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.778 kcal (2) G-P(sol) polarization free energy of solvation -31.603 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.381 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.936 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.539 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.317 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds