Wall clock time and date at job start Tue Mar 31 2020 18:47:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46507 * 109.47296 * 2 1 4 4 C 1.46501 * 119.99895 * 95.07350 * 3 2 1 5 5 C 1.53000 * 109.47305 * 266.73872 * 4 3 2 6 6 N 1.46902 * 109.47088 * 180.02562 * 5 4 3 7 7 C 1.46898 * 110.99902 * 179.97438 * 6 5 4 8 8 C 1.50702 * 109.46814 * 180.02562 * 7 6 5 9 9 C 1.38306 * 119.92749 * 269.72740 * 8 7 6 10 10 C 1.38099 * 120.06544 * 179.72646 * 9 8 7 11 11 C 1.38881 * 119.92933 * 0.56888 * 10 9 8 12 12 O 1.35760 * 120.06528 * 179.68098 * 11 10 9 13 13 C 1.34837 * 116.99430 * 185.95981 * 12 11 10 14 14 H 1.08001 * 120.00295 * 5.52611 * 13 12 11 15 15 C 1.38651 * 119.99683 * 185.52933 * 13 12 11 16 16 N 1.31559 * 119.99772 * 0.02562 * 15 13 12 17 17 Si 1.86796 * 119.99933 * 179.97438 * 15 13 12 18 18 H 1.48497 * 109.47264 * 0.02562 * 17 15 13 19 19 H 1.48504 * 109.47040 * 120.00163 * 17 15 13 20 20 H 1.48506 * 109.47447 * 239.99965 * 17 15 13 21 21 C 1.38871 * 119.86332 * 359.70604 * 11 10 9 22 22 C 1.38102 * 119.93321 * 359.97438 * 21 11 10 23 23 C 1.34772 * 119.99747 * 275.08509 * 3 2 1 24 24 O 1.21280 * 120.00511 * 4.74474 * 23 3 2 25 25 C 1.50702 * 119.99703 * 184.74952 * 23 3 2 26 26 C 1.52999 * 109.47405 * 66.65838 * 25 23 3 27 27 C 1.52998 * 109.47211 * 186.65748 * 25 23 3 28 28 H 1.08993 * 109.47306 * 304.96102 * 1 2 3 29 29 H 1.09003 * 109.46653 * 64.96392 * 1 2 3 30 30 H 1.09001 * 109.47306 * 184.95762 * 1 2 3 31 31 H 1.09001 * 109.47836 * 240.00069 * 2 1 3 32 32 H 1.09003 * 109.47204 * 119.99304 * 2 1 3 33 33 H 1.09002 * 109.46882 * 146.74013 * 4 3 2 34 34 H 1.08998 * 109.47262 * 26.74084 * 4 3 2 35 35 H 1.09002 * 109.47035 * 60.00235 * 5 4 3 36 36 H 1.08998 * 109.47133 * 300.00290 * 5 4 3 37 37 H 1.00906 * 110.99656 * 56.04576 * 6 5 4 38 38 H 1.09002 * 109.47175 * 299.99967 * 7 6 5 39 39 H 1.08998 * 109.46692 * 60.00384 * 7 6 5 40 40 H 1.07996 * 119.97018 * 359.97438 * 9 8 7 41 41 H 1.08005 * 120.03875 * 180.27179 * 10 9 8 42 42 H 0.97002 * 119.99439 * 180.02562 * 16 15 13 43 43 H 1.08002 * 120.03718 * 179.97438 * 21 11 10 44 44 H 1.07998 * 119.96662 * 180.02562 * 22 21 11 45 45 H 1.09003 * 109.47281 * 306.65607 * 25 23 3 46 46 H 1.08998 * 109.47065 * 306.57837 * 26 25 23 47 47 H 1.09004 * 109.46970 * 66.57468 * 26 25 23 48 48 H 1.08997 * 109.47207 * 186.57945 * 26 25 23 49 49 H 1.09005 * 109.47332 * 60.00023 * 27 25 23 50 50 H 1.08998 * 109.47388 * 179.97438 * 27 25 23 51 51 H 1.08995 * 109.47208 * 300.00056 * 27 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.3683 2.0345 1.2638 5 6 1.1580 2.8083 1.7903 6 7 1.5091 3.4637 3.0572 7 6 0.3686 4.2185 3.5932 8 6 0.7660 4.8759 4.8897 9 6 0.5833 4.2075 6.0867 10 6 0.9517 4.8050 7.2760 11 6 1.4953 6.0830 7.2702 12 8 1.8525 6.6756 8.4382 13 6 2.2576 7.9600 8.3741 14 1 2.2025 8.4976 7.4390 15 6 2.7450 8.5906 9.5087 16 7 2.8126 7.9355 10.6476 17 14 3.3069 10.3699 9.4198 18 1 3.1301 10.8762 8.0350 19 1 2.4968 11.1921 10.3541 20 1 4.7399 10.4561 9.7997 21 6 1.6723 6.7537 6.0671 22 6 1.3080 6.1482 4.8805 23 6 2.1454 2.0510 -1.1626 24 8 1.7751 1.5421 -2.1993 25 6 2.7478 3.4324 -1.1744 26 6 4.2246 3.3482 -0.7833 27 6 2.6252 4.0303 -2.5773 28 1 -0.3633 0.5888 0.8421 29 1 -0.3633 0.4349 -0.9312 30 1 -0.3634 -1.0238 0.0888 31 1 1.8934 -0.5138 -0.8900 32 1 1.8933 -0.5137 0.8901 33 1 3.1967 2.7236 1.0994 34 1 2.6627 1.2801 1.9934 35 1 0.3296 2.1191 1.9547 36 1 0.8637 3.5627 1.0607 37 1 2.3158 4.0594 2.9446 38 1 0.0689 4.9824 2.8758 39 1 -0.4654 3.5393 3.7705 40 1 0.1557 3.2158 6.0911 41 1 0.8128 4.2810 8.2101 42 1 3.1532 8.3769 11.4414 43 1 2.0944 7.7478 6.0593 44 1 1.4458 6.6691 3.9446 45 1 2.2188 4.0656 -0.4621 46 1 4.3199 2.8169 0.1637 47 1 4.7754 2.8133 -1.5570 48 1 4.6305 4.3542 -0.6779 49 1 1.5731 4.0903 -2.8560 50 1 3.0604 5.0295 -2.5858 51 1 3.1541 3.3972 -3.2897 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001668366167.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:47:15 Heat of formation + Delta-G solvation = -62.978591 kcal Electronic energy + Delta-G solvation = -28224.880798 eV Core-core repulsion = 24316.955112 eV Total energy + Delta-G solvation = -3907.925685 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.33534 -40.74645 -38.72798 -37.63979 -36.13770 -35.60373 -34.27087 -32.40857 -31.73770 -31.25458 -28.83337 -28.10431 -27.37051 -25.65339 -25.13190 -23.58064 -23.17485 -22.63648 -21.93298 -19.91582 -19.80782 -18.83342 -18.28704 -17.27905 -17.03194 -16.43935 -16.39785 -16.18321 -15.83353 -15.59453 -15.43174 -15.36991 -15.08062 -15.02815 -14.65008 -14.40176 -14.24515 -13.87668 -13.84645 -13.61327 -13.46295 -13.25011 -13.17479 -13.02858 -12.95484 -12.83987 -12.59584 -12.50690 -12.36731 -12.23028 -12.10712 -12.03492 -12.01413 -11.88424 -11.51489 -11.15972 -10.78494 -10.67665 -9.76108 -9.72872 -9.34680 -8.86335 -8.45525 -6.13245 0.65389 0.71415 1.36476 1.44478 1.54555 1.57681 1.96634 2.18982 2.82088 3.13762 3.36908 3.55676 3.69080 3.89154 3.92801 4.02805 4.05666 4.12462 4.16558 4.17171 4.26986 4.33370 4.39368 4.48654 4.52121 4.56120 4.66550 4.73559 4.75927 4.76889 4.81743 4.85959 4.88727 4.89248 5.00147 5.03967 5.08802 5.14018 5.17476 5.27403 5.29379 5.34344 5.35958 5.58849 5.62312 5.76012 5.85237 6.05434 6.05498 6.28880 6.36181 6.51359 6.99677 7.14806 7.81848 8.78116 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.018134 B = 0.001954 C = 0.001822 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1543.688643 B =14329.434416 C =15363.240011 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.108 3.892 3 N -0.606 5.606 4 C 0.098 3.902 5 C 0.047 3.953 6 N -0.685 5.685 7 C 0.124 3.876 8 C -0.157 4.157 9 C -0.046 4.046 10 C -0.208 4.208 11 C 0.113 3.887 12 O -0.235 6.235 13 C -0.410 4.410 14 H 0.101 0.899 15 C -0.025 4.025 16 N -0.921 5.921 17 Si 1.018 2.982 18 H -0.250 1.250 19 H -0.270 1.270 20 H -0.269 1.269 21 C -0.243 4.243 22 C -0.060 4.060 23 C 0.513 3.487 24 O -0.582 6.582 25 C -0.115 4.115 26 C -0.150 4.150 27 C -0.131 4.131 28 H 0.061 0.939 29 H 0.035 0.965 30 H 0.078 0.922 31 H 0.064 0.936 32 H 0.102 0.898 33 H 0.105 0.895 34 H 0.100 0.900 35 H 0.073 0.927 36 H 0.030 0.970 37 H 0.347 0.653 38 H 0.044 0.956 39 H 0.082 0.918 40 H 0.144 0.856 41 H 0.109 0.891 42 H 0.272 0.728 43 H 0.116 0.884 44 H 0.140 0.860 45 H 0.108 0.892 46 H 0.077 0.923 47 H 0.054 0.946 48 H 0.085 0.915 49 H 0.046 0.954 50 H 0.081 0.919 51 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.452 -10.606 -23.473 25.762 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.014 4.014 3 N -0.337 5.337 4 C -0.024 4.024 5 C -0.084 4.084 6 N -0.317 5.317 7 C -0.004 4.004 8 C -0.158 4.158 9 C -0.065 4.065 10 C -0.227 4.227 11 C 0.062 3.938 12 O -0.141 6.141 13 C -0.486 4.486 14 H 0.119 0.881 15 C -0.222 4.222 16 N -0.560 5.560 17 Si 0.838 3.162 18 H -0.174 1.174 19 H -0.195 1.195 20 H -0.194 1.194 21 C -0.262 4.262 22 C -0.079 4.079 23 C 0.302 3.698 24 O -0.462 6.462 25 C -0.136 4.136 26 C -0.207 4.207 27 C -0.189 4.189 28 H 0.080 0.920 29 H 0.054 0.946 30 H 0.097 0.903 31 H 0.082 0.918 32 H 0.120 0.880 33 H 0.122 0.878 34 H 0.118 0.882 35 H 0.091 0.909 36 H 0.049 0.951 37 H 0.166 0.834 38 H 0.062 0.938 39 H 0.100 0.900 40 H 0.161 0.839 41 H 0.127 0.873 42 H 0.081 0.919 43 H 0.134 0.866 44 H 0.158 0.842 45 H 0.125 0.875 46 H 0.096 0.904 47 H 0.074 0.926 48 H 0.104 0.896 49 H 0.065 0.935 50 H 0.100 0.900 51 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -0.716 -11.520 -23.215 25.926 hybrid contribution 0.072 1.448 -0.017 1.450 sum -0.644 -10.072 -23.232 25.329 Atomic orbital electron populations 1.22108 0.95815 1.02916 1.01278 1.21553 0.94685 0.81862 1.03297 1.48040 1.64975 1.14220 1.06514 1.21999 0.97355 0.98786 0.84299 1.22374 0.98661 0.97645 0.89673 1.60408 1.07437 1.36480 1.27396 1.20574 0.93196 0.95377 0.91252 1.19591 1.06147 0.94919 0.95114 1.20842 0.96330 0.99041 0.90278 1.20469 1.08125 0.94331 0.99758 1.19984 0.93758 0.93422 0.86608 1.83958 1.74645 1.27532 1.28010 1.21827 1.43267 0.84906 0.98575 0.88130 1.26587 0.96542 1.05364 0.93736 1.70196 1.45416 1.39448 1.00939 0.84530 0.78107 0.74025 0.79554 1.17371 1.19522 1.19375 1.21229 1.10095 1.02188 0.92681 1.20950 0.95631 0.94630 0.96639 1.21240 0.77330 0.88475 0.82728 1.90659 1.51261 1.70633 1.33636 1.21392 0.98939 0.92474 1.00798 1.22001 0.92203 1.04256 1.02205 1.21604 1.01814 1.01097 0.94376 0.92004 0.94572 0.90328 0.91763 0.88007 0.87775 0.88195 0.90860 0.95137 0.83445 0.93757 0.90002 0.83868 0.87257 0.91910 0.86571 0.84220 0.87451 0.90403 0.92641 0.89567 0.93494 0.89998 0.93161 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.27 10.20 71.98 0.73 -1.54 16 2 C 0.11 1.48 6.08 86.38 0.53 2.01 16 3 N -0.61 -8.74 2.49 -821.80 -2.04 -10.79 16 4 C 0.10 1.05 5.16 86.38 0.45 1.50 16 5 C 0.05 0.59 5.91 86.30 0.51 1.10 16 6 N -0.68 -10.97 6.49 -517.93 -3.36 -14.33 16 7 C 0.12 2.37 5.81 85.56 0.50 2.87 16 8 C -0.16 -4.33 5.40 -19.83 -0.11 -4.44 16 9 C -0.05 -1.47 9.69 22.25 0.22 -1.25 16 10 C -0.21 -8.59 9.99 22.39 0.22 -8.36 16 11 C 0.11 5.47 6.65 22.58 0.15 5.62 16 12 O -0.23 -13.99 9.76 -22.93 -0.22 -14.21 16 13 C -0.41 -23.54 9.44 67.92 0.64 -22.90 16 14 H 0.10 5.29 5.30 -2.91 -0.02 5.28 16 15 C -0.03 -1.41 5.49 84.83 0.47 -0.95 16 16 N -0.92 -56.27 13.67 21.61 0.30 -55.97 16 17 Si 1.02 42.26 29.55 68.60 2.03 44.29 16 18 H -0.25 -9.52 7.11 99.48 0.71 -8.82 16 19 H -0.27 -10.81 7.11 99.48 0.71 -10.10 16 20 H -0.27 -10.70 7.11 99.48 0.71 -9.99 16 21 C -0.24 -10.05 9.13 22.39 0.20 -9.85 16 22 C -0.06 -1.86 9.69 22.25 0.22 -1.64 16 23 C 0.51 9.65 6.92 87.66 0.61 10.26 16 24 O -0.58 -15.74 15.70 -3.03 -0.05 -15.79 16 25 C -0.11 -1.52 2.45 -11.54 -0.03 -1.55 16 26 C -0.15 -1.47 8.79 71.98 0.63 -0.83 16 27 C -0.13 -1.90 8.51 71.98 0.61 -1.29 16 28 H 0.06 0.82 6.69 -2.39 -0.02 0.80 16 29 H 0.04 0.67 8.14 -2.39 -0.02 0.65 16 30 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 31 H 0.06 1.07 7.65 -2.39 -0.02 1.06 16 32 H 0.10 0.93 7.81 -2.39 -0.02 0.92 16 33 H 0.10 0.88 4.15 -2.39 -0.01 0.87 16 34 H 0.10 0.98 7.81 -2.39 -0.02 0.97 16 35 H 0.07 1.01 6.69 -2.39 -0.02 0.99 16 36 H 0.03 0.39 7.08 -2.39 -0.02 0.38 16 37 H 0.35 5.24 8.72 -89.69 -0.78 4.46 16 38 H 0.04 0.76 8.08 -2.39 -0.02 0.74 16 39 H 0.08 1.47 8.08 -2.39 -0.02 1.45 16 40 H 0.14 3.62 8.06 -2.91 -0.02 3.60 16 41 H 0.11 4.54 8.06 -2.91 -0.02 4.52 16 42 H 0.27 15.16 8.31 -92.71 -0.77 14.39 16 43 H 0.12 4.95 5.72 -2.91 -0.02 4.93 16 44 H 0.14 3.31 8.06 -2.91 -0.02 3.29 16 45 H 0.11 1.15 6.67 -2.39 -0.02 1.13 16 46 H 0.08 0.65 5.25 -2.39 -0.01 0.64 16 47 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 48 H 0.09 0.61 8.14 -2.39 -0.02 0.59 16 49 H 0.05 0.79 8.14 -2.38 -0.02 0.77 16 50 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 51 H 0.05 0.85 8.03 -2.39 -0.02 0.83 16 Total: -1.00 -74.75 409.37 3.34 -71.41 By element: Atomic # 1 Polarization: 26.48 SS G_CDS: 0.15 Total: 26.62 kcal Atomic # 6 Polarization: -37.78 SS G_CDS: 6.55 Total: -31.24 kcal Atomic # 7 Polarization: -75.98 SS G_CDS: -5.11 Total: -81.09 kcal Atomic # 8 Polarization: -29.73 SS G_CDS: -0.27 Total: -30.00 kcal Atomic # 14 Polarization: 42.26 SS G_CDS: 2.03 Total: 44.29 kcal Total: -74.75 3.34 -71.41 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001668366167.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.436 kcal (2) G-P(sol) polarization free energy of solvation -74.754 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.318 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.339 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.415 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.979 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds