Wall clock time and date at job start Tue Mar 31 2020 18:51:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46504 * 109.46860 * 2 1 4 4 C 1.46491 * 120.00006 * 269.99772 * 3 2 1 5 5 C 1.53000 * 109.47530 * 270.00000 * 4 3 2 6 6 N 1.46493 * 109.47189 * 179.97438 * 5 4 3 7 7 C 1.36944 * 119.99695 * 179.97438 * 6 5 4 8 8 H 1.07994 * 120.00312 * 0.02562 * 7 6 5 9 9 C 1.38818 * 119.99985 * 180.02562 * 7 6 5 10 10 N 1.31619 * 120.00085 * 180.02562 * 9 7 6 11 11 Si 1.86799 * 119.99816 * 0.02562 * 9 7 6 12 12 H 1.48496 * 109.47400 * 90.00093 * 11 9 7 13 13 H 1.48505 * 109.46957 * 210.00082 * 11 9 7 14 14 H 1.48500 * 109.47186 * 329.99553 * 11 9 7 15 15 C 1.34780 * 119.99664 * 89.99794 * 3 2 1 16 16 O 1.21286 * 119.99252 * 179.97438 * 15 3 2 17 17 C 1.50697 * 120.00089 * 0.02562 * 15 3 2 18 18 C 1.53002 * 109.46832 * 179.97438 * 17 15 3 19 19 O 1.42904 * 109.47152 * 179.97438 * 18 17 15 20 20 C 1.35897 * 116.99870 * 180.02562 * 19 18 17 21 21 C 1.38738 * 120.05494 * 270.27287 * 20 19 18 22 22 C 1.50702 * 120.02558 * 0.02562 * 21 20 19 23 23 C 1.38141 * 119.94395 * 180.25974 * 21 20 19 24 24 C 1.38274 * 120.05552 * 359.44290 * 23 21 20 25 25 C 1.38261 * 120.10990 * 0.30244 * 24 23 21 26 26 C 1.38149 * 120.05703 * 359.97438 * 25 24 23 27 27 C 1.50701 * 120.02698 * 180.02562 * 26 25 24 28 28 H 1.09011 * 109.47137 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.47650 * 299.99766 * 1 2 3 30 30 H 1.08997 * 109.47459 * 60.00066 * 1 2 3 31 31 H 1.08996 * 109.47140 * 240.00370 * 2 1 3 32 32 H 1.09006 * 109.46958 * 119.99672 * 2 1 3 33 33 H 1.09004 * 109.47102 * 30.00006 * 4 3 2 34 34 H 1.08996 * 109.47211 * 150.00164 * 4 3 2 35 35 H 1.08999 * 109.47364 * 300.00220 * 5 4 3 36 36 H 1.09003 * 109.46937 * 60.00196 * 5 4 3 37 37 H 0.96997 * 120.00300 * 0.02562 * 6 5 4 38 38 H 0.96996 * 119.99879 * 179.97438 * 10 9 7 39 39 H 1.08992 * 109.47699 * 59.99756 * 17 15 3 40 40 H 1.08995 * 109.46957 * 299.99117 * 17 15 3 41 41 H 1.08998 * 109.47375 * 59.99736 * 18 17 15 42 42 H 1.08998 * 109.47292 * 299.99975 * 18 17 15 43 43 H 1.09000 * 109.47072 * 270.24905 * 22 21 20 44 44 H 1.08998 * 109.47473 * 30.25788 * 22 21 20 45 45 H 1.09000 * 109.46857 * 150.25773 * 22 21 20 46 46 H 1.08002 * 119.97550 * 179.72852 * 23 21 20 47 47 H 1.07998 * 119.94363 * 180.27764 * 24 23 21 48 48 H 1.07996 * 119.97484 * 179.97438 * 25 24 23 49 49 H 1.08998 * 109.47189 * 89.99754 * 27 26 25 50 50 H 1.09006 * 109.46628 * 209.99786 * 27 26 25 51 51 H 1.09001 * 109.47332 * 329.99143 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 6 2.2624 2.0718 -1.2686 5 6 3.7074 1.8315 -1.7104 6 7 3.9513 2.5216 -2.9793 7 6 5.1837 2.4495 -3.5721 8 1 5.9757 1.8836 -3.1043 9 6 5.4151 3.1038 -4.7743 10 7 6.5994 3.0341 -5.3442 11 14 4.0455 4.0834 -5.5831 12 1 4.0867 5.4861 -5.0975 13 1 4.2271 4.0642 -7.0569 14 1 2.7339 3.4784 -5.2381 15 6 2.2428 2.0166 1.1673 16 8 2.6475 3.1599 1.1672 17 6 1.9921 1.3060 2.4723 18 6 2.3240 2.2432 3.6352 19 8 2.0857 1.5696 4.8728 20 6 2.3323 2.2675 6.0125 21 6 3.5922 2.2287 6.5923 22 6 4.6892 1.4128 5.9583 23 6 3.8388 2.9347 7.7537 24 6 2.8345 3.6889 8.3322 25 6 1.5796 3.7334 7.7535 26 6 1.3263 3.0246 6.5951 27 6 -0.0416 3.0740 5.9646 28 1 -0.3634 -1.0278 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3634 0.5138 -0.8899 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8901 33 1 1.5816 1.6877 -2.0283 34 1 2.0954 3.1410 -1.1383 35 1 4.3882 2.2156 -0.9507 36 1 3.8744 0.7623 -1.8407 37 1 3.2402 3.0303 -3.3993 38 1 6.7609 3.4910 -6.1845 39 1 2.6226 0.4188 2.5299 40 1 0.9443 1.0115 2.5302 41 1 1.6938 3.1307 3.5779 42 1 3.3719 2.5374 3.5772 43 1 4.6684 0.4004 6.3616 44 1 4.5385 1.3774 4.8794 45 1 5.6542 1.8705 6.1756 46 1 4.8181 2.9014 8.2079 47 1 3.0305 4.2437 9.2378 48 1 0.7967 4.3228 8.2074 49 1 -0.0839 3.8983 5.2527 50 1 -0.2366 2.1354 5.4458 51 1 -0.7936 3.2240 6.7393 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001668445183.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:51:44 Heat of formation + Delta-G solvation = -44.692876 kcal Electronic energy + Delta-G solvation = -28561.523086 eV Core-core repulsion = 24654.390329 eV Total energy + Delta-G solvation = -3907.132757 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -40.58885 -39.97281 -37.61920 -36.35224 -34.81682 -33.88108 -32.59547 -31.72026 -30.96524 -30.56437 -28.18741 -27.21520 -26.92997 -24.66109 -23.69808 -22.77576 -21.99724 -21.33108 -21.18460 -19.05052 -18.16573 -17.56431 -16.95316 -16.88803 -16.30056 -15.69926 -15.60934 -15.18758 -14.64514 -14.35472 -14.28276 -14.03877 -13.82275 -13.68879 -13.62889 -13.52720 -13.41345 -13.27479 -12.98391 -12.87271 -12.62268 -12.32688 -12.24233 -12.17801 -11.94519 -11.79325 -11.57591 -11.47408 -11.29826 -11.24038 -11.13118 -11.04292 -10.73836 -10.17187 -10.04043 -9.82679 -9.59528 -8.89283 -8.89035 -8.78189 -8.65228 -7.24188 -5.75950 -3.12205 0.89306 1.02542 2.59707 2.74086 3.22182 3.37876 3.41805 3.46241 3.67569 4.42868 4.45316 4.51433 4.60021 4.65753 4.69537 4.74193 4.80095 4.95339 5.00776 5.07295 5.18080 5.18526 5.24035 5.27216 5.34087 5.40639 5.41744 5.45583 5.46920 5.51796 5.52483 5.54600 5.58163 5.59564 5.65901 5.75198 5.83258 5.93993 5.96493 5.98671 6.14827 6.15606 6.28065 6.42514 6.48766 6.62234 6.79714 7.29787 7.38040 7.98968 8.15356 8.42347 9.20806 9.92968 10.12165 11.42370 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.015296 B = 0.002199 C = 0.002077 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1830.127311 B =12728.491270 C =13479.636067 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.100 3.900 3 N -0.605 5.605 4 C 0.104 3.896 5 C 0.147 3.853 6 N -0.754 5.754 7 C -0.243 4.243 8 H 0.090 0.910 9 C 0.004 3.996 10 N -0.934 5.934 11 Si 0.886 3.114 12 H -0.283 1.283 13 H -0.290 1.290 14 H -0.277 1.277 15 C 0.517 3.483 16 O -0.534 6.534 17 C -0.137 4.137 18 C 0.082 3.918 19 O -0.334 6.334 20 C 0.097 3.903 21 C -0.097 4.097 22 C -0.113 4.113 23 C -0.116 4.116 24 C -0.118 4.118 25 C -0.117 4.117 26 C -0.098 4.098 27 C -0.114 4.114 28 H 0.068 0.932 29 H 0.056 0.944 30 H 0.060 0.940 31 H 0.086 0.914 32 H 0.080 0.920 33 H 0.076 0.924 34 H 0.084 0.916 35 H 0.031 0.969 36 H 0.026 0.974 37 H 0.361 0.639 38 H 0.260 0.740 39 H 0.103 0.897 40 H 0.102 0.898 41 H 0.062 0.938 42 H 0.064 0.936 43 H 0.073 0.927 44 H 0.070 0.930 45 H 0.067 0.933 46 H 0.125 0.875 47 H 0.124 0.876 48 H 0.125 0.875 49 H 0.070 0.930 50 H 0.073 0.927 51 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.965 -5.632 27.468 31.783 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.023 4.023 3 N -0.339 5.339 4 C -0.018 4.018 5 C 0.019 3.981 6 N -0.400 5.400 7 C -0.373 4.373 8 H 0.108 0.892 9 C -0.192 4.192 10 N -0.582 5.582 11 Si 0.717 3.283 12 H -0.210 1.210 13 H -0.217 1.217 14 H -0.204 1.204 15 C 0.304 3.696 16 O -0.410 6.410 17 C -0.177 4.177 18 C 0.007 3.993 19 O -0.252 6.252 20 C 0.053 3.947 21 C -0.097 4.097 22 C -0.170 4.170 23 C -0.134 4.134 24 C -0.136 4.136 25 C -0.135 4.135 26 C -0.099 4.099 27 C -0.171 4.171 28 H 0.087 0.913 29 H 0.075 0.925 30 H 0.079 0.921 31 H 0.104 0.896 32 H 0.098 0.902 33 H 0.095 0.905 34 H 0.102 0.898 35 H 0.049 0.951 36 H 0.044 0.956 37 H 0.193 0.807 38 H 0.070 0.930 39 H 0.122 0.878 40 H 0.120 0.880 41 H 0.080 0.920 42 H 0.083 0.917 43 H 0.092 0.908 44 H 0.088 0.912 45 H 0.086 0.914 46 H 0.143 0.857 47 H 0.142 0.858 48 H 0.143 0.857 49 H 0.088 0.912 50 H 0.092 0.908 51 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -14.571 -5.270 27.381 31.461 hybrid contribution -0.800 0.829 -0.718 1.357 sum -15.370 -4.441 26.663 31.095 Atomic orbital electron populations 1.22219 0.95840 1.02357 1.02568 1.21647 0.94388 0.82381 1.03858 1.47881 1.65576 1.14371 1.06024 1.21723 0.98140 0.98421 0.83537 1.20885 0.92781 0.95855 0.88616 1.42558 1.12399 1.61874 1.23136 1.19029 0.88245 1.27132 1.02880 0.89246 1.24680 0.96495 1.00397 0.97626 1.69702 1.20935 1.47869 1.19675 0.86518 0.82183 0.80708 0.78931 1.20978 1.21682 1.20368 1.20280 0.77574 0.86641 0.85105 1.90760 1.45076 1.17887 1.87308 1.21517 1.04902 1.00142 0.91163 1.22370 1.01599 0.94448 0.80869 1.85895 1.87609 1.39879 1.11792 1.18272 0.92009 0.95679 0.88713 1.20267 0.94358 0.98575 0.96508 1.20735 0.95875 0.99153 1.01198 1.20950 0.99592 0.97561 0.95306 1.21147 0.93210 0.99230 1.00056 1.20931 0.97331 0.99680 0.95564 1.20233 0.96593 0.96425 0.96636 1.20726 0.92480 1.03125 1.00727 0.91344 0.92527 0.92079 0.89583 0.90175 0.90525 0.89784 0.95111 0.95588 0.80674 0.93031 0.87840 0.88008 0.91982 0.91743 0.90834 0.91151 0.91417 0.85656 0.85810 0.85738 0.91182 0.90782 0.91456 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.29 10.24 37.16 0.38 -0.91 16 2 C 0.10 0.91 5.93 -4.04 -0.02 0.88 16 3 N -0.61 -7.80 2.47 -173.69 -0.43 -8.23 16 4 C 0.10 1.66 5.52 -4.05 -0.02 1.64 16 5 C 0.15 2.97 6.58 -4.05 -0.03 2.94 16 6 N -0.75 -18.54 5.41 -59.91 -0.32 -18.86 16 7 C -0.24 -7.10 10.47 -15.05 -0.16 -7.25 16 8 H 0.09 2.80 8.06 -52.49 -0.42 2.37 16 9 C 0.00 0.11 5.50 -17.43 -0.10 0.02 16 10 N -0.93 -29.84 13.97 55.49 0.78 -29.06 16 11 Si 0.89 22.47 27.74 -169.99 -4.71 17.75 16 12 H -0.28 -7.18 7.11 56.52 0.40 -6.78 16 13 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 14 H -0.28 -6.53 6.52 56.52 0.37 -6.16 16 15 C 0.52 7.10 7.67 -10.99 -0.08 7.02 16 16 O -0.53 -9.67 15.56 5.55 0.09 -9.58 16 17 C -0.14 -1.35 4.62 -27.88 -0.13 -1.48 16 18 C 0.08 0.91 4.98 37.16 0.18 1.09 16 19 O -0.33 -3.64 8.33 -19.42 -0.16 -3.81 16 20 C 0.10 1.06 5.67 -39.21 -0.22 0.83 16 21 C -0.10 -0.98 5.89 -104.47 -0.62 -1.59 16 22 C -0.11 -1.00 9.79 36.01 0.35 -0.65 16 23 C -0.12 -1.01 9.70 -39.60 -0.38 -1.40 16 24 C -0.12 -0.95 10.04 -39.56 -0.40 -1.35 16 25 C -0.12 -0.99 9.70 -39.61 -0.38 -1.38 16 26 C -0.10 -0.96 5.89 -104.47 -0.62 -1.58 16 27 C -0.11 -0.92 9.79 36.01 0.35 -0.56 16 28 H 0.07 0.40 8.14 -51.92 -0.42 -0.02 16 29 H 0.06 0.41 7.22 -51.93 -0.38 0.04 16 30 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 31 H 0.09 0.79 8.07 -51.93 -0.42 0.37 16 32 H 0.08 0.57 6.44 -51.93 -0.33 0.23 16 33 H 0.08 1.09 8.07 -51.93 -0.42 0.67 16 34 H 0.08 1.47 7.42 -51.93 -0.39 1.09 16 35 H 0.03 0.69 8.14 -51.93 -0.42 0.26 16 36 H 0.03 0.52 8.14 -51.93 -0.42 0.09 16 37 H 0.36 8.55 5.53 -40.82 -0.23 8.33 16 38 H 0.26 7.87 8.31 -40.82 -0.34 7.53 16 39 H 0.10 0.87 7.40 -51.93 -0.38 0.48 16 40 H 0.10 0.80 7.19 -51.93 -0.37 0.43 16 41 H 0.06 0.73 8.10 -51.93 -0.42 0.31 16 42 H 0.06 0.80 7.19 -51.93 -0.37 0.42 16 43 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 44 H 0.07 0.68 6.30 -51.93 -0.33 0.35 16 45 H 0.07 0.52 8.09 -51.93 -0.42 0.10 16 46 H 0.13 0.84 8.06 -52.49 -0.42 0.41 16 47 H 0.12 0.70 8.06 -52.49 -0.42 0.28 16 48 H 0.12 0.79 8.06 -52.49 -0.42 0.36 16 49 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 50 H 0.07 0.61 7.53 -51.93 -0.39 0.22 16 51 H 0.07 0.43 8.09 -51.93 -0.42 0.01 16 LS Contribution 414.22 15.07 6.24 6.24 Total: -1.00 -35.40 414.22 -9.08 -44.48 By element: Atomic # 1 Polarization: 13.45 SS G_CDS: -8.66 Total: 4.79 kcal Atomic # 6 Polarization: -1.83 SS G_CDS: -1.89 Total: -3.72 kcal Atomic # 7 Polarization: -56.18 SS G_CDS: 0.02 Total: -56.16 kcal Atomic # 8 Polarization: -13.31 SS G_CDS: -0.08 Total: -13.39 kcal Atomic # 14 Polarization: 22.47 SS G_CDS: -4.71 Total: 17.75 kcal Total LS contribution 6.24 Total: 6.24 kcal Total: -35.40 -9.08 -44.48 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001668445183.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.210 kcal (2) G-P(sol) polarization free energy of solvation -35.404 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.614 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.079 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.482 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.693 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds