Wall clock time and date at job start Tue Mar 31 2020 18:51:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46504 * 109.46860 * 2 1 4 4 C 1.46491 * 120.00006 * 269.99772 * 3 2 1 5 5 C 1.53000 * 109.47530 * 270.00000 * 4 3 2 6 6 N 1.46493 * 109.47189 * 179.97438 * 5 4 3 7 7 C 1.36944 * 119.99695 * 179.97438 * 6 5 4 8 8 H 1.07994 * 120.00312 * 0.02562 * 7 6 5 9 9 C 1.38818 * 119.99985 * 180.02562 * 7 6 5 10 10 N 1.31619 * 120.00085 * 180.02562 * 9 7 6 11 11 Si 1.86799 * 119.99816 * 0.02562 * 9 7 6 12 12 H 1.48496 * 109.47400 * 90.00093 * 11 9 7 13 13 H 1.48505 * 109.46957 * 210.00082 * 11 9 7 14 14 H 1.48500 * 109.47186 * 329.99553 * 11 9 7 15 15 C 1.34780 * 119.99664 * 89.99794 * 3 2 1 16 16 O 1.21286 * 119.99252 * 179.97438 * 15 3 2 17 17 C 1.50697 * 120.00089 * 0.02562 * 15 3 2 18 18 C 1.53002 * 109.46832 * 179.97438 * 17 15 3 19 19 O 1.42904 * 109.47152 * 179.97438 * 18 17 15 20 20 C 1.35897 * 116.99870 * 180.02562 * 19 18 17 21 21 C 1.38738 * 120.05494 * 270.27287 * 20 19 18 22 22 C 1.50702 * 120.02558 * 0.02562 * 21 20 19 23 23 C 1.38141 * 119.94395 * 180.25974 * 21 20 19 24 24 C 1.38274 * 120.05552 * 359.44290 * 23 21 20 25 25 C 1.38261 * 120.10990 * 0.30244 * 24 23 21 26 26 C 1.38149 * 120.05703 * 359.97438 * 25 24 23 27 27 C 1.50701 * 120.02698 * 180.02562 * 26 25 24 28 28 H 1.09011 * 109.47137 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.47650 * 299.99766 * 1 2 3 30 30 H 1.08997 * 109.47459 * 60.00066 * 1 2 3 31 31 H 1.08996 * 109.47140 * 240.00370 * 2 1 3 32 32 H 1.09006 * 109.46958 * 119.99672 * 2 1 3 33 33 H 1.09004 * 109.47102 * 30.00006 * 4 3 2 34 34 H 1.08996 * 109.47211 * 150.00164 * 4 3 2 35 35 H 1.08999 * 109.47364 * 300.00220 * 5 4 3 36 36 H 1.09003 * 109.46937 * 60.00196 * 5 4 3 37 37 H 0.96997 * 120.00300 * 0.02562 * 6 5 4 38 38 H 0.96996 * 119.99879 * 179.97438 * 10 9 7 39 39 H 1.08992 * 109.47699 * 59.99756 * 17 15 3 40 40 H 1.08995 * 109.46957 * 299.99117 * 17 15 3 41 41 H 1.08998 * 109.47375 * 59.99736 * 18 17 15 42 42 H 1.08998 * 109.47292 * 299.99975 * 18 17 15 43 43 H 1.09000 * 109.47072 * 270.24905 * 22 21 20 44 44 H 1.08998 * 109.47473 * 30.25788 * 22 21 20 45 45 H 1.09000 * 109.46857 * 150.25773 * 22 21 20 46 46 H 1.08002 * 119.97550 * 179.72852 * 23 21 20 47 47 H 1.07998 * 119.94363 * 180.27764 * 24 23 21 48 48 H 1.07996 * 119.97484 * 179.97438 * 25 24 23 49 49 H 1.08998 * 109.47189 * 89.99754 * 27 26 25 50 50 H 1.09006 * 109.46628 * 209.99786 * 27 26 25 51 51 H 1.09001 * 109.47332 * 329.99143 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 6 2.2624 2.0718 -1.2686 5 6 3.7074 1.8315 -1.7104 6 7 3.9513 2.5216 -2.9793 7 6 5.1837 2.4495 -3.5721 8 1 5.9757 1.8836 -3.1043 9 6 5.4151 3.1038 -4.7743 10 7 6.5994 3.0341 -5.3442 11 14 4.0455 4.0834 -5.5831 12 1 4.0867 5.4861 -5.0975 13 1 4.2271 4.0642 -7.0569 14 1 2.7339 3.4784 -5.2381 15 6 2.2428 2.0166 1.1673 16 8 2.6475 3.1599 1.1672 17 6 1.9921 1.3060 2.4723 18 6 2.3240 2.2432 3.6352 19 8 2.0857 1.5696 4.8728 20 6 2.3323 2.2675 6.0125 21 6 3.5922 2.2287 6.5923 22 6 4.6892 1.4128 5.9583 23 6 3.8388 2.9347 7.7537 24 6 2.8345 3.6889 8.3322 25 6 1.5796 3.7334 7.7535 26 6 1.3263 3.0246 6.5951 27 6 -0.0416 3.0740 5.9646 28 1 -0.3634 -1.0278 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3634 0.5138 -0.8899 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8901 33 1 1.5816 1.6877 -2.0283 34 1 2.0954 3.1410 -1.1383 35 1 4.3882 2.2156 -0.9507 36 1 3.8744 0.7623 -1.8407 37 1 3.2402 3.0303 -3.3993 38 1 6.7609 3.4910 -6.1845 39 1 2.6226 0.4188 2.5299 40 1 0.9443 1.0115 2.5302 41 1 1.6938 3.1307 3.5779 42 1 3.3719 2.5374 3.5772 43 1 4.6684 0.4004 6.3616 44 1 4.5385 1.3774 4.8794 45 1 5.6542 1.8705 6.1756 46 1 4.8181 2.9014 8.2079 47 1 3.0305 4.2437 9.2378 48 1 0.7967 4.3228 8.2074 49 1 -0.0839 3.8983 5.2527 50 1 -0.2366 2.1354 5.4458 51 1 -0.7936 3.2240 6.7393 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001668445183.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:51:43 Heat of formation + Delta-G solvation = -66.089238 kcal Electronic energy + Delta-G solvation = -28562.450902 eV Core-core repulsion = 24654.390329 eV Total energy + Delta-G solvation = -3908.060573 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.41649 -40.95058 -38.39085 -37.63445 -36.50485 -34.54066 -33.99566 -33.15335 -31.88690 -31.56395 -29.59231 -28.00469 -27.56664 -26.02745 -24.75179 -24.02193 -23.04831 -22.66915 -21.85627 -20.26732 -19.56425 -18.90930 -17.88387 -17.76104 -17.39602 -16.63182 -16.48608 -16.36313 -15.93644 -15.87698 -15.32203 -15.10893 -15.00632 -14.79505 -14.75097 -14.48837 -14.38929 -14.07858 -13.90028 -13.75553 -13.60262 -13.45305 -13.13826 -13.02326 -12.94635 -12.84089 -12.81550 -12.62679 -12.46153 -12.31951 -12.17431 -12.11145 -11.97386 -11.87165 -11.85009 -11.04828 -10.96297 -10.84423 -9.77988 -9.55540 -9.49060 -9.38951 -8.07226 -5.43139 0.18630 0.35362 1.35369 1.41027 1.47429 1.52503 1.76983 2.44124 2.45540 2.92313 3.23699 3.52004 3.69359 3.78562 3.85227 3.91606 3.93111 4.07616 4.09079 4.12860 4.16818 4.34129 4.36466 4.41786 4.45386 4.50832 4.56034 4.57145 4.61857 4.71778 4.73038 4.75549 4.76661 4.85376 4.88478 4.90148 4.98013 5.04761 5.06170 5.17971 5.30405 5.40488 5.49752 5.50280 5.50834 5.59545 5.69198 5.83724 6.15598 6.34258 6.52344 7.00836 7.08725 7.74524 7.95717 9.14050 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.015296 B = 0.002199 C = 0.002077 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1830.127311 B =12728.491270 C =13479.636067 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.093 3.907 3 N -0.602 5.602 4 C 0.118 3.882 5 C 0.150 3.850 6 N -0.755 5.755 7 C -0.242 4.242 8 H 0.052 0.948 9 C -0.063 4.063 10 N -0.982 5.982 11 Si 0.960 3.040 12 H -0.281 1.281 13 H -0.290 1.290 14 H -0.245 1.245 15 C 0.512 3.488 16 O -0.586 6.586 17 C -0.124 4.124 18 C 0.088 3.912 19 O -0.332 6.332 20 C 0.067 3.933 21 C -0.115 4.115 22 C -0.112 4.112 23 C -0.125 4.125 24 C -0.118 4.118 25 C -0.123 4.123 26 C -0.113 4.113 27 C -0.112 4.112 28 H 0.090 0.910 29 H 0.060 0.940 30 H 0.050 0.950 31 H 0.087 0.913 32 H 0.105 0.895 33 H 0.101 0.899 34 H 0.066 0.934 35 H 0.003 0.997 36 H 0.034 0.966 37 H 0.368 0.632 38 H 0.260 0.740 39 H 0.124 0.876 40 H 0.130 0.870 41 H 0.050 0.950 42 H 0.043 0.957 43 H 0.081 0.919 44 H 0.056 0.944 45 H 0.076 0.924 46 H 0.144 0.856 47 H 0.150 0.850 48 H 0.147 0.853 49 H 0.067 0.933 50 H 0.069 0.931 51 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.817 -6.243 28.841 34.471 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.028 4.028 3 N -0.334 5.334 4 C -0.006 4.006 5 C 0.022 3.978 6 N -0.401 5.401 7 C -0.372 4.372 8 H 0.070 0.930 9 C -0.255 4.255 10 N -0.632 5.632 11 Si 0.786 3.214 12 H -0.208 1.208 13 H -0.216 1.216 14 H -0.169 1.169 15 C 0.301 3.699 16 O -0.466 6.466 17 C -0.163 4.163 18 C 0.013 3.987 19 O -0.250 6.250 20 C 0.024 3.976 21 C -0.115 4.115 22 C -0.168 4.168 23 C -0.143 4.143 24 C -0.136 4.136 25 C -0.141 4.141 26 C -0.113 4.113 27 C -0.168 4.168 28 H 0.109 0.891 29 H 0.079 0.921 30 H 0.069 0.931 31 H 0.105 0.895 32 H 0.123 0.877 33 H 0.120 0.880 34 H 0.085 0.915 35 H 0.021 0.979 36 H 0.052 0.948 37 H 0.202 0.798 38 H 0.069 0.931 39 H 0.142 0.858 40 H 0.148 0.852 41 H 0.068 0.932 42 H 0.061 0.939 43 H 0.099 0.901 44 H 0.075 0.925 45 H 0.095 0.905 46 H 0.162 0.838 47 H 0.168 0.832 48 H 0.165 0.835 49 H 0.085 0.915 50 H 0.088 0.912 51 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -17.473 -5.940 28.796 34.202 hybrid contribution 0.185 0.972 -1.016 1.419 sum -17.288 -4.968 27.780 33.095 Atomic orbital electron populations 1.22177 0.94217 1.03719 1.02304 1.21984 0.95676 0.80000 1.05187 1.47982 1.65007 1.15777 1.04661 1.21399 0.95426 0.98148 0.85638 1.20959 0.95307 0.95413 0.86097 1.42511 1.10959 1.62360 1.24306 1.18977 0.89209 1.26147 1.02917 0.92979 1.25591 0.99435 1.02026 0.98456 1.69890 1.23607 1.49383 1.20312 0.85345 0.79997 0.78735 0.77335 1.20759 1.21642 1.16881 1.20962 0.76359 0.86138 0.86410 1.90738 1.47452 1.20349 1.88075 1.21461 1.06994 0.99698 0.88144 1.22209 1.00061 0.94598 0.81835 1.85884 1.87574 1.39862 1.11664 1.18577 0.92933 0.97099 0.88990 1.20525 0.94474 0.99223 0.97317 1.20734 0.96129 0.99654 1.00290 1.21253 1.00776 0.97260 0.94970 1.21522 0.92801 0.98648 1.00643 1.21272 0.98253 0.99438 0.95149 1.20530 0.97088 0.96461 0.97268 1.20733 0.92184 1.02766 1.01117 0.89130 0.92092 0.93082 0.89490 0.87732 0.88037 0.91503 0.97894 0.94795 0.79824 0.93112 0.85790 0.85166 0.93185 0.93863 0.90051 0.92485 0.90485 0.83840 0.83204 0.83532 0.91452 0.91214 0.89662 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.93 10.24 71.98 0.74 -1.19 16 2 C 0.09 1.41 5.93 86.38 0.51 1.92 16 3 N -0.60 -14.68 2.47 -821.83 -2.03 -16.71 16 4 C 0.12 3.63 5.52 86.38 0.48 4.10 16 5 C 0.15 6.07 6.58 86.38 0.57 6.64 16 6 N -0.75 -37.00 5.41 -343.46 -1.86 -38.86 16 7 C -0.24 -14.42 10.47 84.03 0.88 -13.54 16 8 H 0.05 3.42 8.06 -2.91 -0.02 3.40 16 9 C -0.06 -3.85 5.50 84.86 0.47 -3.38 16 10 N -0.98 -64.31 13.97 21.65 0.30 -64.01 16 11 Si 0.96 46.16 27.74 68.60 1.90 48.06 16 12 H -0.28 -13.41 7.11 99.48 0.71 -12.70 16 13 H -0.29 -13.89 7.11 99.48 0.71 -13.18 16 14 H -0.24 -10.35 6.52 99.48 0.65 -9.71 16 15 C 0.51 13.83 7.67 87.66 0.67 14.50 16 16 O -0.59 -21.87 15.56 -3.05 -0.05 -21.91 16 17 C -0.12 -2.25 4.62 29.85 0.14 -2.12 16 18 C 0.09 1.98 4.98 71.98 0.36 2.33 16 19 O -0.33 -7.17 8.33 -92.39 -0.77 -7.94 16 20 C 0.07 1.46 5.67 22.51 0.13 1.59 16 21 C -0.11 -2.31 5.89 -19.77 -0.12 -2.42 16 22 C -0.11 -1.98 9.79 71.24 0.70 -1.28 16 23 C -0.12 -2.04 9.70 22.26 0.22 -1.82 16 24 C -0.12 -1.69 10.04 22.28 0.22 -1.47 16 25 C -0.12 -1.89 9.70 22.25 0.22 -1.68 16 26 C -0.11 -2.13 5.89 -19.77 -0.12 -2.25 16 27 C -0.11 -1.68 9.79 71.24 0.70 -0.98 16 28 H 0.09 0.69 8.14 -2.38 -0.02 0.67 16 29 H 0.06 0.67 7.22 -2.39 -0.02 0.65 16 30 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 31 H 0.09 1.35 8.07 -2.39 -0.02 1.33 16 32 H 0.10 1.10 6.44 -2.38 -0.02 1.08 16 33 H 0.10 2.64 8.07 -2.38 -0.02 2.62 16 34 H 0.07 2.32 7.42 -2.39 -0.02 2.30 16 35 H 0.00 0.14 8.14 -2.39 -0.02 0.12 16 36 H 0.03 1.33 8.14 -2.39 -0.02 1.31 16 37 H 0.37 16.85 5.53 -92.71 -0.51 16.34 16 38 H 0.26 16.10 8.31 -92.71 -0.77 15.33 16 39 H 0.12 1.79 7.40 -2.39 -0.02 1.77 16 40 H 0.13 1.67 7.19 -2.39 -0.02 1.65 16 41 H 0.05 1.22 8.10 -2.39 -0.02 1.20 16 42 H 0.04 1.14 7.19 -2.39 -0.02 1.12 16 43 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 44 H 0.06 1.14 6.30 -2.39 -0.02 1.13 16 45 H 0.08 1.16 8.09 -2.39 -0.02 1.14 16 46 H 0.14 1.69 8.06 -2.91 -0.02 1.67 16 47 H 0.15 1.28 8.06 -2.91 -0.02 1.25 16 48 H 0.15 1.50 8.06 -2.91 -0.02 1.48 16 49 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 50 H 0.07 1.09 7.53 -2.38 -0.02 1.07 16 51 H 0.08 0.93 8.09 -2.39 -0.02 0.91 16 Total: -1.00 -80.08 414.22 4.59 -75.49 By element: Atomic # 1 Polarization: 26.58 SS G_CDS: 0.34 Total: 26.92 kcal Atomic # 6 Polarization: -7.80 SS G_CDS: 6.76 Total: -1.04 kcal Atomic # 7 Polarization: -115.99 SS G_CDS: -3.59 Total: -119.57 kcal Atomic # 8 Polarization: -29.04 SS G_CDS: -0.82 Total: -29.86 kcal Atomic # 14 Polarization: 46.16 SS G_CDS: 1.90 Total: 48.06 kcal Total: -80.08 4.59 -75.49 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001668445183.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.403 kcal (2) G-P(sol) polarization free energy of solvation -80.083 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.681 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.591 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.492 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.089 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds