Wall clock time and date at job start Tue Mar 31 2020 18:51:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46496 * 109.46942 * 2 1 4 4 C 1.46497 * 120.00129 * 269.99599 * 3 2 1 5 5 C 1.53009 * 109.47238 * 270.00499 * 4 3 2 6 6 N 1.46497 * 109.47238 * 179.97438 * 5 4 3 7 7 C 1.36934 * 120.00370 * 180.02562 * 6 5 4 8 8 H 1.08001 * 119.99711 * 359.97438 * 7 6 5 9 9 C 1.38810 * 120.00367 * 179.97438 * 7 6 5 10 10 N 1.31622 * 119.99961 * 0.02562 * 9 7 6 11 11 Si 1.86798 * 119.99931 * 179.97438 * 9 7 6 12 12 H 1.48504 * 109.47398 * 0.02562 * 11 9 7 13 13 H 1.48504 * 109.46942 * 120.00226 * 11 9 7 14 14 H 1.48500 * 109.47466 * 240.00224 * 11 9 7 15 15 C 1.34777 * 120.00345 * 90.00092 * 3 2 1 16 16 O 1.21283 * 120.00463 * 179.97438 * 15 3 2 17 17 C 1.50700 * 119.99675 * 359.72090 * 15 3 2 18 18 C 1.53004 * 109.47208 * 180.27843 * 17 15 3 19 19 H 1.09000 * 109.47217 * 54.99834 * 18 17 15 20 20 C 1.53000 * 109.46787 * 294.99932 * 18 17 15 21 21 C 1.50696 * 109.47117 * 174.99635 * 18 17 15 22 22 C 1.38163 * 120.02662 * 60.00426 * 21 18 17 23 23 C 1.38248 * 120.05793 * 179.97438 * 22 21 18 24 24 C 1.38282 * 120.10866 * 0.02562 * 23 22 21 25 25 C 1.38121 * 120.06045 * 0.02562 * 24 23 22 26 26 C 1.38714 * 120.03266 * 239.72106 * 21 18 17 27 27 O 1.35902 * 120.04936 * 0.02562 * 26 21 18 28 28 C 1.42900 * 116.99735 * 179.97438 * 27 26 21 29 29 H 1.08997 * 109.46656 * 60.00331 * 1 2 3 30 30 H 1.09002 * 109.47083 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.46999 * 300.00039 * 1 2 3 32 32 H 1.08995 * 109.47592 * 239.99526 * 2 1 3 33 33 H 1.09002 * 109.47093 * 119.99833 * 2 1 3 34 34 H 1.09000 * 109.46889 * 29.99981 * 4 3 2 35 35 H 1.09001 * 109.47460 * 150.00590 * 4 3 2 36 36 H 1.09000 * 109.46757 * 299.99562 * 5 4 3 37 37 H 1.08993 * 109.47081 * 59.99692 * 5 4 3 38 38 H 0.97001 * 120.00037 * 359.97438 * 6 5 4 39 39 H 0.97004 * 119.99711 * 179.97438 * 10 9 7 40 40 H 1.09009 * 109.47352 * 300.27556 * 17 15 3 41 41 H 1.08998 * 109.47585 * 60.27844 * 17 15 3 42 42 H 1.09000 * 109.47161 * 299.99935 * 20 18 17 43 43 H 1.09003 * 109.47289 * 60.00086 * 20 18 17 44 44 H 1.09004 * 109.46667 * 179.97438 * 20 18 17 45 45 H 1.08009 * 119.97644 * 359.97087 * 22 21 18 46 46 H 1.07995 * 119.94839 * 179.97438 * 23 22 21 47 47 H 1.08007 * 119.97292 * 179.97438 * 24 23 22 48 48 H 1.07999 * 120.03314 * 179.97438 * 25 24 23 49 49 H 1.08998 * 109.47395 * 300.00311 * 28 27 26 50 50 H 1.09002 * 109.47371 * 60.00292 * 28 27 26 51 51 H 1.09007 * 109.47147 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2626 2.0718 -1.2687 5 6 3.7076 1.8313 -1.7104 6 7 3.9517 2.5214 -2.9794 7 6 5.1837 2.4484 -3.5726 8 1 5.9756 1.8823 -3.1048 9 6 5.4148 3.1018 -4.7753 10 7 4.4498 3.7921 -5.3452 11 14 7.0956 3.0026 -5.5842 12 1 7.9991 2.1719 -4.7482 13 1 6.9621 2.3878 -6.9294 14 1 7.6618 4.3689 -5.7184 15 6 2.2430 2.0166 1.1672 16 8 2.6477 3.1599 1.1672 17 6 1.9859 1.3083 2.4723 18 6 2.3119 2.2476 3.6352 19 1 1.7468 3.1730 3.5242 20 6 3.8095 2.5611 3.6330 21 6 1.9394 1.5845 4.9361 22 6 2.5309 0.3892 5.2971 23 6 2.1900 -0.2194 6.4907 24 6 1.2561 0.3659 7.3259 25 6 0.6611 1.5602 6.9692 26 6 1.0067 2.1765 5.7750 27 8 0.4274 3.3549 5.4246 28 6 -0.5246 3.9063 6.3366 29 1 -0.3632 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8934 -0.5139 -0.8899 33 1 1.8934 -0.5138 0.8900 34 1 1.5818 1.6876 -2.0283 35 1 2.0957 3.1410 -1.1384 36 1 4.3884 2.2155 -0.9507 37 1 3.8746 0.7622 -1.8407 38 1 3.2404 3.0295 -3.3998 39 1 4.6115 4.2490 -6.1855 40 1 0.9376 1.0142 2.5258 41 1 2.6158 0.4209 2.5344 42 1 4.3746 1.6357 3.7439 43 1 4.0789 3.0408 2.6920 44 1 4.0417 3.2306 4.4612 45 1 3.2602 -0.0702 4.6463 46 1 2.6531 -1.1539 6.7709 47 1 0.9911 -0.1117 8.2577 48 1 -0.0684 2.0167 7.6216 49 1 -1.3473 3.2041 6.4716 50 1 -0.0432 4.0908 7.2969 51 1 -0.9099 4.8443 5.9367 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001668619014.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:51:28 Heat of formation + Delta-G solvation = -43.537390 kcal Electronic energy + Delta-G solvation = -29007.869476 eV Core-core repulsion = 25100.786824 eV Total energy + Delta-G solvation = -3907.082651 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.71652 -39.80106 -37.78568 -36.33662 -35.05290 -34.51272 -31.77721 -30.42662 -30.24172 -30.20584 -28.53209 -27.49106 -26.79035 -24.08812 -23.58282 -23.14544 -22.33009 -21.52964 -20.30778 -18.64804 -18.34514 -17.23531 -17.03719 -16.50145 -16.05950 -15.95669 -15.65108 -15.18286 -14.70298 -14.68304 -14.32806 -13.92288 -13.87783 -13.72174 -13.51386 -13.37424 -13.08423 -13.00747 -12.89371 -12.61963 -12.51057 -12.27170 -12.01133 -11.89287 -11.71598 -11.40815 -11.24814 -11.19738 -11.12981 -10.92695 -10.85550 -10.77377 -10.67172 -10.60304 -10.03601 -9.72285 -9.42942 -9.09799 -8.83206 -8.41885 -8.38878 -6.88110 -5.71978 -3.00785 1.04526 1.18181 2.86122 3.01603 3.15252 3.46997 3.49670 3.52533 3.54938 4.36600 4.50586 4.60694 4.65424 4.77730 4.82417 4.83342 4.87816 4.92199 5.02035 5.10718 5.13029 5.17774 5.18694 5.33080 5.36579 5.41546 5.57068 5.58194 5.65971 5.68457 5.72655 5.73737 5.79996 5.90246 5.97707 6.04961 6.09101 6.12504 6.14791 6.22082 6.24558 6.44839 6.48945 6.51968 6.67163 6.81848 6.99793 7.13321 7.62969 7.74934 8.43024 8.47290 9.57542 10.14555 10.49540 11.51090 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.018238 B = 0.002220 C = 0.002193 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1534.918984 B =12611.728151 C =12763.370375 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.103 3.897 3 N -0.609 5.609 4 C 0.108 3.892 5 C 0.144 3.856 6 N -0.731 5.731 7 C -0.235 4.235 8 H 0.070 0.930 9 C -0.016 4.016 10 N -0.934 5.934 11 Si 0.908 3.092 12 H -0.280 1.280 13 H -0.292 1.292 14 H -0.291 1.291 15 C 0.512 3.488 16 O -0.529 6.529 17 C -0.130 4.130 18 C -0.030 4.030 19 H 0.094 0.906 20 C -0.148 4.148 21 C -0.103 4.103 22 C -0.078 4.078 23 C -0.156 4.156 24 C -0.087 4.087 25 C -0.209 4.209 26 C 0.130 3.870 27 O -0.311 6.311 28 C 0.027 3.973 29 H 0.061 0.939 30 H 0.065 0.935 31 H 0.055 0.945 32 H 0.083 0.917 33 H 0.076 0.924 34 H 0.074 0.926 35 H 0.084 0.916 36 H 0.023 0.977 37 H 0.016 0.984 38 H 0.384 0.616 39 H 0.254 0.746 40 H 0.090 0.910 41 H 0.091 0.909 42 H 0.048 0.952 43 H 0.082 0.918 44 H 0.051 0.949 45 H 0.129 0.871 46 H 0.122 0.878 47 H 0.122 0.878 48 H 0.126 0.874 49 H 0.054 0.946 50 H 0.054 0.946 51 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.703 -9.578 27.517 31.785 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.020 4.020 3 N -0.343 5.343 4 C -0.014 4.014 5 C 0.015 3.985 6 N -0.375 5.375 7 C -0.366 4.366 8 H 0.088 0.912 9 C -0.211 4.211 10 N -0.582 5.582 11 Si 0.739 3.261 12 H -0.206 1.206 13 H -0.219 1.219 14 H -0.218 1.218 15 C 0.300 3.700 16 O -0.405 6.405 17 C -0.170 4.170 18 C -0.049 4.049 19 H 0.112 0.888 20 C -0.205 4.205 21 C -0.104 4.104 22 C -0.096 4.096 23 C -0.174 4.174 24 C -0.106 4.106 25 C -0.227 4.227 26 C 0.085 3.915 27 O -0.224 6.224 28 C -0.068 4.068 29 H 0.080 0.920 30 H 0.084 0.916 31 H 0.074 0.926 32 H 0.101 0.899 33 H 0.094 0.906 34 H 0.093 0.907 35 H 0.102 0.898 36 H 0.041 0.959 37 H 0.034 0.966 38 H 0.217 0.783 39 H 0.064 0.936 40 H 0.108 0.892 41 H 0.109 0.891 42 H 0.067 0.933 43 H 0.101 0.899 44 H 0.070 0.930 45 H 0.147 0.853 46 H 0.140 0.860 47 H 0.140 0.860 48 H 0.144 0.856 49 H 0.072 0.928 50 H 0.072 0.928 51 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -12.285 -8.881 27.311 31.236 hybrid contribution 0.420 -0.058 -0.338 0.542 sum -11.865 -8.938 26.973 30.793 Atomic orbital electron populations 1.22220 0.96056 1.02097 1.02598 1.21567 0.94255 0.82802 1.03402 1.47973 1.65785 1.14168 1.06331 1.21666 0.97951 0.98402 0.83420 1.20901 0.92896 0.95370 0.89307 1.42226 1.12866 1.60815 1.21620 1.19252 0.89308 1.25887 1.02195 0.91181 1.24751 0.97843 1.00446 0.98104 1.69677 1.31504 1.37536 1.19532 0.86093 0.83638 0.77217 0.79116 1.20575 1.21888 1.21831 1.20581 0.77403 0.86831 0.85218 1.90701 1.44811 1.17858 1.87101 1.21795 1.03444 0.99554 0.92176 1.19731 0.98330 0.98244 0.88601 0.88794 1.21967 0.93633 1.01274 1.03649 1.19320 0.97783 0.96179 0.97091 1.20906 0.98364 0.93900 0.96408 1.21045 0.99995 1.01015 0.95360 1.20902 0.95851 0.94633 0.99164 1.21210 1.05038 0.98851 0.97644 1.18873 0.93396 0.85986 0.93272 1.86131 1.55311 1.34387 1.46578 1.23062 0.91008 0.99117 0.93597 0.92021 0.91603 0.92603 0.89880 0.90554 0.90745 0.89797 0.95946 0.96573 0.78296 0.93578 0.89153 0.89090 0.93294 0.89905 0.92976 0.85323 0.85961 0.86039 0.85645 0.92770 0.92760 0.88150 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.54 10.24 37.16 0.38 -1.16 16 2 C 0.10 1.08 5.93 -4.04 -0.02 1.05 16 3 N -0.61 -8.77 2.47 -173.68 -0.43 -9.20 16 4 C 0.11 1.92 5.52 -4.04 -0.02 1.90 16 5 C 0.14 3.12 6.58 -4.04 -0.03 3.09 16 6 N -0.73 -19.48 5.60 -59.91 -0.34 -19.82 16 7 C -0.24 -6.87 9.99 -15.06 -0.15 -7.02 16 8 H 0.07 2.00 7.83 -52.49 -0.41 1.59 16 9 C -0.02 -0.47 5.50 -17.43 -0.10 -0.56 16 10 N -0.93 -29.01 13.06 55.49 0.72 -28.29 16 11 Si 0.91 23.05 29.55 -169.99 -5.02 18.02 16 12 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 13 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 14 H -0.29 -7.42 7.11 56.52 0.40 -7.02 16 15 C 0.51 7.74 7.39 -10.98 -0.08 7.66 16 16 O -0.53 -10.16 13.54 5.55 0.08 -10.09 16 17 C -0.13 -1.44 3.47 -27.88 -0.10 -1.54 16 18 C -0.03 -0.36 2.17 -91.77 -0.20 -0.56 16 19 H 0.09 1.34 6.81 -51.93 -0.35 0.99 16 20 C -0.15 -1.87 8.75 37.16 0.33 -1.55 16 21 C -0.10 -1.09 4.79 -104.48 -0.50 -1.59 16 22 C -0.08 -0.69 8.76 -39.61 -0.35 -1.04 16 23 C -0.16 -1.23 10.04 -39.56 -0.40 -1.62 16 24 C -0.09 -0.67 10.04 -39.61 -0.40 -1.07 16 25 C -0.21 -1.77 9.04 -39.43 -0.36 -2.13 16 26 C 0.13 1.36 6.66 -39.22 -0.26 1.10 16 27 O -0.31 -3.33 9.26 -19.43 -0.18 -3.52 16 28 C 0.03 0.18 9.81 101.05 0.99 1.17 16 29 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 31 H 0.05 0.50 7.20 -51.93 -0.37 0.13 16 32 H 0.08 0.88 8.07 -51.93 -0.42 0.46 16 33 H 0.08 0.63 6.45 -51.93 -0.33 0.30 16 34 H 0.07 1.23 8.07 -51.93 -0.42 0.81 16 35 H 0.08 1.66 7.42 -51.93 -0.39 1.28 16 36 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.02 0.35 8.14 -51.93 -0.42 -0.08 16 38 H 0.38 10.62 7.67 -40.82 -0.31 10.31 16 39 H 0.25 7.59 8.31 -40.82 -0.34 7.26 16 40 H 0.09 0.89 7.16 -51.92 -0.37 0.52 16 41 H 0.09 0.84 6.84 -51.93 -0.35 0.48 16 42 H 0.05 0.54 7.39 -51.93 -0.38 0.15 16 43 H 0.08 1.29 5.95 -51.93 -0.31 0.98 16 44 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 45 H 0.13 0.97 7.16 -52.48 -0.38 0.60 16 46 H 0.12 0.71 8.06 -52.49 -0.42 0.29 16 47 H 0.12 0.65 8.06 -52.48 -0.42 0.23 16 48 H 0.13 0.80 6.30 -52.49 -0.33 0.47 16 49 H 0.05 0.29 7.65 -51.93 -0.40 -0.11 16 50 H 0.05 0.29 7.68 -51.93 -0.40 -0.11 16 51 H 0.10 0.52 8.14 -51.92 -0.42 0.10 16 LS Contribution 408.42 15.07 6.15 6.15 Total: -1.00 -35.16 408.42 -8.72 -43.89 By element: Atomic # 1 Polarization: 15.17 SS G_CDS: -8.45 Total: 6.72 kcal Atomic # 6 Polarization: -2.62 SS G_CDS: -1.26 Total: -3.88 kcal Atomic # 7 Polarization: -57.26 SS G_CDS: -0.04 Total: -57.30 kcal Atomic # 8 Polarization: -13.50 SS G_CDS: -0.10 Total: -13.60 kcal Atomic # 14 Polarization: 23.05 SS G_CDS: -5.02 Total: 18.02 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -35.16 -8.72 -43.89 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001668619014.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.349 kcal (2) G-P(sol) polarization free energy of solvation -35.164 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.815 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.723 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.887 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.537 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds