Wall clock time and date at job start Tue Mar 31 2020 18:51:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46496 * 109.46942 * 2 1 4 4 C 1.46497 * 120.00129 * 269.99599 * 3 2 1 5 5 C 1.53009 * 109.47238 * 270.00499 * 4 3 2 6 6 N 1.46497 * 109.47238 * 179.97438 * 5 4 3 7 7 C 1.36934 * 120.00370 * 180.02562 * 6 5 4 8 8 H 1.08001 * 119.99711 * 359.97438 * 7 6 5 9 9 C 1.38810 * 120.00367 * 179.97438 * 7 6 5 10 10 N 1.31622 * 119.99961 * 0.02562 * 9 7 6 11 11 Si 1.86798 * 119.99931 * 179.97438 * 9 7 6 12 12 H 1.48504 * 109.47398 * 0.02562 * 11 9 7 13 13 H 1.48504 * 109.46942 * 120.00226 * 11 9 7 14 14 H 1.48500 * 109.47466 * 240.00224 * 11 9 7 15 15 C 1.34777 * 120.00345 * 90.00092 * 3 2 1 16 16 O 1.21283 * 120.00463 * 179.97438 * 15 3 2 17 17 C 1.50700 * 119.99675 * 359.72090 * 15 3 2 18 18 C 1.53004 * 109.47208 * 180.27843 * 17 15 3 19 19 H 1.09000 * 109.47217 * 54.99834 * 18 17 15 20 20 C 1.53000 * 109.46787 * 294.99932 * 18 17 15 21 21 C 1.50696 * 109.47117 * 174.99635 * 18 17 15 22 22 C 1.38163 * 120.02662 * 60.00426 * 21 18 17 23 23 C 1.38248 * 120.05793 * 179.97438 * 22 21 18 24 24 C 1.38282 * 120.10866 * 0.02562 * 23 22 21 25 25 C 1.38121 * 120.06045 * 0.02562 * 24 23 22 26 26 C 1.38714 * 120.03266 * 239.72106 * 21 18 17 27 27 O 1.35902 * 120.04936 * 0.02562 * 26 21 18 28 28 C 1.42900 * 116.99735 * 179.97438 * 27 26 21 29 29 H 1.08997 * 109.46656 * 60.00331 * 1 2 3 30 30 H 1.09002 * 109.47083 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.46999 * 300.00039 * 1 2 3 32 32 H 1.08995 * 109.47592 * 239.99526 * 2 1 3 33 33 H 1.09002 * 109.47093 * 119.99833 * 2 1 3 34 34 H 1.09000 * 109.46889 * 29.99981 * 4 3 2 35 35 H 1.09001 * 109.47460 * 150.00590 * 4 3 2 36 36 H 1.09000 * 109.46757 * 299.99562 * 5 4 3 37 37 H 1.08993 * 109.47081 * 59.99692 * 5 4 3 38 38 H 0.97001 * 120.00037 * 359.97438 * 6 5 4 39 39 H 0.97004 * 119.99711 * 179.97438 * 10 9 7 40 40 H 1.09009 * 109.47352 * 300.27556 * 17 15 3 41 41 H 1.08998 * 109.47585 * 60.27844 * 17 15 3 42 42 H 1.09000 * 109.47161 * 299.99935 * 20 18 17 43 43 H 1.09003 * 109.47289 * 60.00086 * 20 18 17 44 44 H 1.09004 * 109.46667 * 179.97438 * 20 18 17 45 45 H 1.08009 * 119.97644 * 359.97087 * 22 21 18 46 46 H 1.07995 * 119.94839 * 179.97438 * 23 22 21 47 47 H 1.08007 * 119.97292 * 179.97438 * 24 23 22 48 48 H 1.07999 * 120.03314 * 179.97438 * 25 24 23 49 49 H 1.08998 * 109.47395 * 300.00311 * 28 27 26 50 50 H 1.09002 * 109.47371 * 60.00292 * 28 27 26 51 51 H 1.09007 * 109.47147 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2626 2.0718 -1.2687 5 6 3.7076 1.8313 -1.7104 6 7 3.9517 2.5214 -2.9794 7 6 5.1837 2.4484 -3.5726 8 1 5.9756 1.8823 -3.1048 9 6 5.4148 3.1018 -4.7753 10 7 4.4498 3.7921 -5.3452 11 14 7.0956 3.0026 -5.5842 12 1 7.9991 2.1719 -4.7482 13 1 6.9621 2.3878 -6.9294 14 1 7.6618 4.3689 -5.7184 15 6 2.2430 2.0166 1.1672 16 8 2.6477 3.1599 1.1672 17 6 1.9859 1.3083 2.4723 18 6 2.3119 2.2476 3.6352 19 1 1.7468 3.1730 3.5242 20 6 3.8095 2.5611 3.6330 21 6 1.9394 1.5845 4.9361 22 6 2.5309 0.3892 5.2971 23 6 2.1900 -0.2194 6.4907 24 6 1.2561 0.3659 7.3259 25 6 0.6611 1.5602 6.9692 26 6 1.0067 2.1765 5.7750 27 8 0.4274 3.3549 5.4246 28 6 -0.5246 3.9063 6.3366 29 1 -0.3632 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8934 -0.5139 -0.8899 33 1 1.8934 -0.5138 0.8900 34 1 1.5818 1.6876 -2.0283 35 1 2.0957 3.1410 -1.1384 36 1 4.3884 2.2155 -0.9507 37 1 3.8746 0.7622 -1.8407 38 1 3.2404 3.0295 -3.3998 39 1 4.6115 4.2490 -6.1855 40 1 0.9376 1.0142 2.5258 41 1 2.6158 0.4209 2.5344 42 1 4.3746 1.6357 3.7439 43 1 4.0789 3.0408 2.6920 44 1 4.0417 3.2306 4.4612 45 1 3.2602 -0.0702 4.6463 46 1 2.6531 -1.1539 6.7709 47 1 0.9911 -0.1117 8.2577 48 1 -0.0684 2.0167 7.6216 49 1 -1.3473 3.2041 6.4716 50 1 -0.0432 4.0908 7.2969 51 1 -0.9099 4.8443 5.9367 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001668619014.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:51:27 Heat of formation + Delta-G solvation = -64.974202 kcal Electronic energy + Delta-G solvation = -29008.799046 eV Core-core repulsion = 25100.786824 eV Total energy + Delta-G solvation = -3908.012221 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.52731 -40.84644 -38.48147 -37.62816 -36.36226 -35.97013 -33.62653 -31.58485 -31.08209 -30.93027 -29.79023 -28.21408 -28.04463 -25.70512 -24.62364 -24.19216 -23.22856 -22.91380 -21.24291 -19.85184 -19.18897 -18.97575 -18.12819 -17.51678 -17.08923 -16.66957 -16.52701 -16.39080 -16.30173 -15.48163 -15.41629 -15.25087 -15.19124 -14.92193 -14.70174 -14.49603 -14.37150 -14.18625 -13.87180 -13.56117 -13.29927 -13.09256 -12.94270 -12.93708 -12.80345 -12.69191 -12.63886 -12.48201 -12.37706 -12.09886 -12.07139 -11.97616 -11.93120 -11.86409 -11.60946 -11.49452 -11.00087 -10.66911 -9.74545 -9.67955 -9.07596 -9.04913 -7.98823 -5.29678 0.41333 0.54928 1.45147 1.47447 1.57447 1.67829 1.98926 2.44057 2.55062 2.85948 3.34366 3.48037 3.76356 3.90392 3.99360 4.06676 4.11841 4.15342 4.19347 4.22235 4.26981 4.31562 4.38307 4.44370 4.46116 4.51723 4.56319 4.56656 4.61242 4.65047 4.72104 4.79677 4.81782 4.90291 4.94957 5.02289 5.07579 5.11053 5.15474 5.27110 5.35865 5.39760 5.43068 5.50234 5.60499 5.63023 5.67890 5.93901 6.22769 6.47827 6.51470 7.25108 7.28628 8.00495 8.25862 9.24854 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.018238 B = 0.002220 C = 0.002193 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1534.918984 B =12611.728151 C =12763.370375 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.096 3.904 3 N -0.607 5.607 4 C 0.124 3.876 5 C 0.151 3.849 6 N -0.744 5.744 7 C -0.248 4.248 8 H 0.073 0.927 9 C -0.076 4.076 10 N -0.969 5.969 11 Si 0.979 3.021 12 H -0.266 1.266 13 H -0.287 1.287 14 H -0.293 1.293 15 C 0.504 3.496 16 O -0.579 6.579 17 C -0.116 4.116 18 C -0.023 4.023 19 H 0.061 0.939 20 C -0.143 4.143 21 C -0.121 4.121 22 C -0.081 4.081 23 C -0.157 4.157 24 C -0.087 4.087 25 C -0.213 4.213 26 C 0.110 3.890 27 O -0.341 6.341 28 C 0.020 3.980 29 H 0.046 0.954 30 H 0.092 0.908 31 H 0.056 0.944 32 H 0.084 0.916 33 H 0.106 0.894 34 H 0.089 0.911 35 H 0.055 0.945 36 H 0.000 1.000 37 H 0.030 0.970 38 H 0.375 0.625 39 H 0.253 0.747 40 H 0.110 0.890 41 H 0.120 0.880 42 H 0.068 0.932 43 H 0.047 0.953 44 H 0.047 0.953 45 H 0.142 0.858 46 H 0.146 0.854 47 H 0.148 0.852 48 H 0.143 0.857 49 H 0.067 0.933 50 H 0.064 0.936 51 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.888 -12.623 29.474 34.556 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.026 4.026 3 N -0.339 5.339 4 C 0.000 4.000 5 C 0.024 3.976 6 N -0.387 5.387 7 C -0.380 4.380 8 H 0.091 0.909 9 C -0.268 4.268 10 N -0.619 5.619 11 Si 0.807 3.193 12 H -0.191 1.191 13 H -0.214 1.214 14 H -0.220 1.220 15 C 0.294 3.706 16 O -0.459 6.459 17 C -0.156 4.156 18 C -0.042 4.042 19 H 0.080 0.920 20 C -0.200 4.200 21 C -0.122 4.122 22 C -0.099 4.099 23 C -0.175 4.175 24 C -0.105 4.105 25 C -0.231 4.231 26 C 0.065 3.935 27 O -0.255 6.255 28 C -0.074 4.074 29 H 0.065 0.935 30 H 0.111 0.889 31 H 0.075 0.925 32 H 0.103 0.897 33 H 0.124 0.876 34 H 0.108 0.892 35 H 0.074 0.926 36 H 0.018 0.982 37 H 0.048 0.952 38 H 0.207 0.793 39 H 0.062 0.938 40 H 0.128 0.872 41 H 0.138 0.862 42 H 0.087 0.913 43 H 0.066 0.934 44 H 0.067 0.933 45 H 0.160 0.840 46 H 0.164 0.836 47 H 0.166 0.834 48 H 0.161 0.839 49 H 0.086 0.914 50 H 0.083 0.917 51 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -12.491 -11.983 29.307 34.037 hybrid contribution 0.436 0.882 -0.844 1.296 sum -12.054 -11.101 28.463 32.844 Atomic orbital electron populations 1.22177 0.94713 1.03609 1.01919 1.21914 0.95341 0.80328 1.04976 1.48080 1.65405 1.15676 1.04784 1.21258 0.95750 0.97454 0.85574 1.20937 0.94875 0.95133 0.86704 1.42420 1.12063 1.61187 1.23014 1.19626 0.90277 1.25608 1.02480 0.90858 1.25653 1.01829 1.00430 0.98882 1.69834 1.33629 1.38552 1.19885 0.84999 0.79111 0.77080 0.78090 1.19065 1.21362 1.21989 1.21389 0.76212 0.86412 0.86546 1.90688 1.47043 1.20302 1.87848 1.21789 1.05124 0.99593 0.89060 1.19529 0.97026 0.97412 0.90233 0.92023 1.21884 0.94829 1.01784 1.01492 1.19249 0.99167 0.97239 0.96565 1.21090 0.98339 0.93247 0.97203 1.21370 0.99699 1.01701 0.94719 1.21288 0.95100 0.94108 0.99988 1.21464 1.05366 0.99191 0.97117 1.19135 0.93956 0.86239 0.94215 1.86096 1.56264 1.34919 1.48192 1.23280 0.90876 0.99681 0.93591 0.93517 0.88925 0.92518 0.89723 0.87573 0.89238 0.92607 0.98214 0.95179 0.79347 0.93802 0.87222 0.86241 0.91305 0.93388 0.93341 0.83993 0.83578 0.83440 0.83923 0.91406 0.91701 0.87420 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.58 10.24 71.98 0.74 -1.84 16 2 C 0.10 1.77 5.93 86.38 0.51 2.28 16 3 N -0.61 -17.27 2.47 -821.80 -2.03 -19.31 16 4 C 0.12 4.50 5.52 86.38 0.48 4.98 16 5 C 0.15 6.69 6.58 86.38 0.57 7.26 16 6 N -0.74 -40.66 5.60 -343.45 -1.92 -42.58 16 7 C -0.25 -14.66 9.99 84.03 0.84 -13.82 16 8 H 0.07 4.19 7.83 -2.91 -0.02 4.16 16 9 C -0.08 -4.52 5.50 84.86 0.47 -4.06 16 10 N -0.97 -61.24 13.06 21.65 0.28 -60.96 16 11 Si 0.98 47.63 29.55 68.60 2.03 49.66 16 12 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 13 H -0.29 -13.66 7.11 99.48 0.71 -12.95 16 14 H -0.29 -14.24 7.11 99.48 0.71 -13.54 16 15 C 0.50 15.50 7.39 87.66 0.65 16.15 16 16 O -0.58 -23.74 13.54 -3.04 -0.04 -23.78 16 17 C -0.12 -2.45 3.47 29.85 0.10 -2.35 16 18 C -0.02 -0.56 2.17 -11.54 -0.03 -0.59 16 19 H 0.06 1.89 6.81 -2.39 -0.02 1.87 16 20 C -0.14 -3.73 8.75 71.98 0.63 -3.10 16 21 C -0.12 -2.46 4.79 -19.77 -0.09 -2.55 16 22 C -0.08 -1.24 8.76 22.25 0.19 -1.05 16 23 C -0.16 -1.94 10.04 22.28 0.22 -1.72 16 24 C -0.09 -1.05 10.04 22.25 0.22 -0.83 16 25 C -0.21 -3.18 9.04 22.37 0.20 -2.98 16 26 C 0.11 2.22 6.66 22.51 0.15 2.37 16 27 O -0.34 -7.45 9.26 -92.45 -0.86 -8.31 16 28 C 0.02 0.25 9.81 113.37 1.11 1.37 16 29 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 30 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 31 H 0.06 0.88 7.20 -2.39 -0.02 0.86 16 32 H 0.08 1.58 8.07 -2.39 -0.02 1.56 16 33 H 0.11 1.36 6.45 -2.39 -0.02 1.34 16 34 H 0.09 2.97 8.07 -2.39 -0.02 2.95 16 35 H 0.06 2.35 7.42 -2.39 -0.02 2.33 16 36 H 0.00 -0.01 8.14 -2.39 -0.02 -0.03 16 37 H 0.03 1.26 8.14 -2.39 -0.02 1.24 16 38 H 0.37 21.50 7.67 -92.71 -0.71 20.78 16 39 H 0.25 15.35 8.31 -92.71 -0.77 14.58 16 40 H 0.11 1.93 7.16 -2.38 -0.02 1.91 16 41 H 0.12 1.84 6.84 -2.39 -0.02 1.83 16 42 H 0.07 1.46 7.39 -2.39 -0.02 1.44 16 43 H 0.05 1.60 5.95 -2.39 -0.01 1.58 16 44 H 0.05 1.25 8.14 -2.38 -0.02 1.23 16 45 H 0.14 1.69 7.16 -2.91 -0.02 1.67 16 46 H 0.15 1.08 8.06 -2.91 -0.02 1.06 16 47 H 0.15 0.98 8.06 -2.91 -0.02 0.95 16 48 H 0.14 1.50 6.30 -2.91 -0.02 1.49 16 49 H 0.07 0.64 7.65 -2.39 -0.02 0.62 16 50 H 0.06 0.65 7.68 -2.39 -0.02 0.63 16 51 H 0.11 1.11 8.14 -2.38 -0.02 1.10 16 Total: -1.00 -79.40 408.42 4.63 -74.77 By element: Atomic # 1 Polarization: 30.79 SS G_CDS: 0.21 Total: 31.00 kcal Atomic # 6 Polarization: -7.45 SS G_CDS: 6.97 Total: -0.48 kcal Atomic # 7 Polarization: -119.18 SS G_CDS: -3.67 Total: -122.85 kcal Atomic # 8 Polarization: -31.19 SS G_CDS: -0.90 Total: -32.09 kcal Atomic # 14 Polarization: 47.63 SS G_CDS: 2.03 Total: 49.66 kcal Total: -79.40 4.63 -74.77 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001668619014.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.795 kcal (2) G-P(sol) polarization free energy of solvation -79.402 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.606 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.632 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.769 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.974 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds