Wall clock time and date at job start Tue Mar 31 2020 18:51:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46499 * 109.47250 * 2 1 4 4 C 1.46499 * 119.99698 * 269.99743 * 3 2 1 5 5 C 1.53002 * 109.47212 * 269.99625 * 4 3 2 6 6 N 1.46500 * 109.46854 * 180.02562 * 5 4 3 7 7 C 1.36936 * 119.99757 * 180.02562 * 6 5 4 8 8 H 1.08004 * 119.99777 * 359.97438 * 7 6 5 9 9 C 1.38815 * 120.00206 * 179.97438 * 7 6 5 10 10 N 1.31614 * 119.99740 * 359.97438 * 9 7 6 11 11 Si 1.86797 * 120.00041 * 179.97438 * 9 7 6 12 12 H 1.48510 * 109.47112 * 89.99970 * 11 9 7 13 13 H 1.48498 * 109.47318 * 209.99870 * 11 9 7 14 14 H 1.48498 * 109.47375 * 330.00126 * 11 9 7 15 15 C 1.34774 * 120.00284 * 89.99333 * 3 2 1 16 16 O 1.21280 * 120.00521 * 180.02562 * 15 3 2 17 17 C 1.50703 * 119.99710 * 0.02562 * 15 3 2 18 18 C 1.53006 * 109.47131 * 179.97438 * 17 15 3 19 19 H 1.09000 * 109.47050 * 305.00095 * 18 17 15 20 20 C 1.52999 * 109.46626 * 64.99793 * 18 17 15 21 21 C 1.50697 * 109.47239 * 184.99759 * 18 17 15 22 22 C 1.38165 * 120.03189 * 299.72949 * 21 18 17 23 23 C 1.38240 * 120.05431 * 179.76917 * 22 21 18 24 24 C 1.38286 * 120.11544 * 0.50680 * 23 22 21 25 25 C 1.38123 * 120.05383 * 359.74315 * 24 23 22 26 26 C 1.38712 * 120.02413 * 120.00207 * 21 18 17 27 27 O 1.35896 * 120.05686 * 359.97438 * 26 21 18 28 28 C 1.42907 * 117.00129 * 180.02562 * 27 26 21 29 29 H 1.09003 * 109.46955 * 60.00549 * 1 2 3 30 30 H 1.08997 * 109.46609 * 179.97438 * 1 2 3 31 31 H 1.08994 * 109.46901 * 300.00249 * 1 2 3 32 32 H 1.09002 * 109.47533 * 239.99787 * 2 1 3 33 33 H 1.09003 * 109.46955 * 119.99451 * 2 1 3 34 34 H 1.08997 * 109.47435 * 30.00136 * 4 3 2 35 35 H 1.09004 * 109.46773 * 149.99663 * 4 3 2 36 36 H 1.09001 * 109.46793 * 300.00088 * 5 4 3 37 37 H 1.08991 * 109.47001 * 60.00196 * 5 4 3 38 38 H 0.96999 * 120.00554 * 359.97438 * 6 5 4 39 39 H 0.96998 * 120.00329 * 180.02562 * 10 9 7 40 40 H 1.09004 * 109.47057 * 60.00280 * 17 15 3 41 41 H 1.08992 * 109.47337 * 299.99626 * 17 15 3 42 42 H 1.09002 * 109.46719 * 180.02562 * 20 18 17 43 43 H 1.08993 * 109.47839 * 299.99931 * 20 18 17 44 44 H 1.09000 * 109.47160 * 60.00369 * 20 18 17 45 45 H 1.07999 * 119.96941 * 0.02562 * 22 21 18 46 46 H 1.08006 * 119.94312 * 180.25125 * 23 22 21 47 47 H 1.07997 * 119.97241 * 179.76969 * 24 23 22 48 48 H 1.07997 * 120.02908 * 180.02562 * 25 24 23 49 49 H 1.09000 * 109.46834 * 59.99889 * 28 27 26 50 50 H 1.08998 * 109.47312 * 179.97438 * 28 27 26 51 51 H 1.09001 * 109.46811 * 300.00129 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2626 2.0717 -1.2688 5 6 3.7077 1.8313 -1.7104 6 7 3.9520 2.5224 -2.9788 7 6 5.1841 2.4495 -3.5719 8 1 5.9758 1.8829 -3.1043 9 6 5.4155 3.1038 -4.7741 10 7 4.4505 3.7939 -5.3441 11 14 7.0964 3.0050 -5.5828 12 1 7.1379 1.8355 -6.4971 13 1 7.3474 4.2474 -6.3565 14 1 8.1404 2.8534 -4.5377 15 6 2.2429 2.0166 1.1671 16 8 2.6468 3.1602 1.1672 17 6 1.9921 1.3061 2.4723 18 6 2.3240 2.2433 3.6352 19 1 3.3456 2.6077 3.5281 20 6 1.3563 3.4284 3.6270 21 6 2.1912 1.4954 4.9368 22 6 0.9770 0.9429 5.2961 23 6 0.8559 0.2526 6.4877 24 6 1.9465 0.1223 7.3279 25 6 3.1613 0.6772 6.9757 26 6 3.2867 1.3661 5.7778 27 8 4.4809 1.9130 5.4290 28 6 5.5656 1.7399 6.3432 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3632 -1.0277 -0.0005 31 1 -0.3633 0.5139 0.8899 32 1 1.8934 -0.5139 -0.8900 33 1 1.8933 -0.5138 0.8901 34 1 1.5818 1.6876 -2.0284 35 1 2.0956 3.1410 -1.1384 36 1 4.3884 2.2155 -0.9507 37 1 3.8746 0.7622 -1.8406 38 1 3.2408 3.0309 -3.3990 39 1 4.6120 4.2508 -6.1844 40 1 2.6227 0.4188 2.5299 41 1 0.9444 1.0116 2.5302 42 1 1.5930 4.0964 4.4553 43 1 1.4522 3.9694 2.6857 44 1 0.3346 3.0640 3.7342 45 1 0.1227 1.0467 4.6435 46 1 -0.0932 -0.1821 6.7648 47 1 1.8483 -0.4143 8.2600 48 1 4.0128 0.5749 7.6320 49 1 5.7594 0.6760 6.4797 50 1 6.4575 2.2231 5.9445 51 1 5.3071 2.1882 7.3026 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001668619015.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:51:31 Heat of formation + Delta-G solvation = -43.371425 kcal Electronic energy + Delta-G solvation = -29031.991882 eV Core-core repulsion = 25124.916427 eV Total energy + Delta-G solvation = -3907.075455 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.70484 -39.79669 -37.76733 -36.33649 -35.05753 -34.50671 -31.77426 -30.42116 -30.24527 -30.19300 -28.55064 -27.46016 -26.79459 -24.07965 -23.61414 -23.11900 -22.32179 -21.51400 -20.32071 -18.66752 -18.31976 -17.22857 -17.00699 -16.49132 -16.03056 -15.88151 -15.65577 -15.36947 -14.70115 -14.54881 -14.27170 -13.96211 -13.87001 -13.71671 -13.51887 -13.45899 -13.09336 -12.97934 -12.86046 -12.64425 -12.45801 -12.29572 -12.02140 -11.90193 -11.65058 -11.41132 -11.36052 -11.18716 -11.03207 -10.93862 -10.83185 -10.78048 -10.70571 -10.59174 -10.07125 -9.72027 -9.43028 -9.09509 -8.82308 -8.41662 -8.37271 -6.87781 -5.71476 -3.00252 1.04973 1.19052 2.86183 3.04871 3.15453 3.47382 3.50200 3.52403 3.54758 4.37103 4.51389 4.61542 4.65733 4.79616 4.82977 4.87112 4.88585 4.92798 5.02168 5.11659 5.12194 5.17488 5.23602 5.33013 5.35807 5.42094 5.54705 5.58031 5.65778 5.67492 5.71797 5.72906 5.79186 5.90270 5.96693 6.04188 6.09006 6.12491 6.13408 6.21905 6.24413 6.42600 6.45762 6.52721 6.67301 6.82375 7.00603 7.15775 7.63046 7.74934 8.43169 8.47773 9.57993 10.14971 10.50111 11.51570 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.014658 B = 0.002427 C = 0.002208 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1909.763230 B =11535.544810 C =12679.287938 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.103 3.897 3 N -0.609 5.609 4 C 0.108 3.892 5 C 0.143 3.857 6 N -0.730 5.730 7 C -0.236 4.236 8 H 0.070 0.930 9 C -0.015 4.015 10 N -0.934 5.934 11 Si 0.908 3.092 12 H -0.290 1.290 13 H -0.291 1.291 14 H -0.282 1.282 15 C 0.512 3.488 16 O -0.528 6.528 17 C -0.130 4.130 18 C -0.031 4.031 19 H 0.095 0.905 20 C -0.147 4.147 21 C -0.104 4.104 22 C -0.078 4.078 23 C -0.157 4.157 24 C -0.087 4.087 25 C -0.209 4.209 26 C 0.131 3.869 27 O -0.310 6.310 28 C 0.027 3.973 29 H 0.061 0.939 30 H 0.065 0.935 31 H 0.055 0.945 32 H 0.083 0.917 33 H 0.076 0.924 34 H 0.074 0.926 35 H 0.084 0.916 36 H 0.023 0.977 37 H 0.016 0.984 38 H 0.384 0.616 39 H 0.255 0.745 40 H 0.091 0.909 41 H 0.090 0.910 42 H 0.051 0.949 43 H 0.081 0.919 44 H 0.047 0.953 45 H 0.128 0.872 46 H 0.122 0.878 47 H 0.122 0.878 48 H 0.126 0.874 49 H 0.054 0.946 50 H 0.101 0.899 51 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.524 -10.651 27.517 31.006 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.021 4.021 3 N -0.343 5.343 4 C -0.014 4.014 5 C 0.015 3.985 6 N -0.375 5.375 7 C -0.367 4.367 8 H 0.088 0.912 9 C -0.211 4.211 10 N -0.583 5.583 11 Si 0.739 3.261 12 H -0.217 1.217 13 H -0.217 1.217 14 H -0.208 1.208 15 C 0.300 3.700 16 O -0.405 6.405 17 C -0.169 4.169 18 C -0.050 4.050 19 H 0.113 0.887 20 C -0.204 4.204 21 C -0.104 4.104 22 C -0.096 4.096 23 C -0.175 4.175 24 C -0.105 4.105 25 C -0.227 4.227 26 C 0.086 3.914 27 O -0.223 6.223 28 C -0.068 4.068 29 H 0.080 0.920 30 H 0.084 0.916 31 H 0.074 0.926 32 H 0.101 0.899 33 H 0.095 0.905 34 H 0.093 0.907 35 H 0.102 0.898 36 H 0.041 0.959 37 H 0.034 0.966 38 H 0.217 0.783 39 H 0.065 0.935 40 H 0.109 0.891 41 H 0.109 0.891 42 H 0.070 0.930 43 H 0.099 0.901 44 H 0.066 0.934 45 H 0.146 0.854 46 H 0.140 0.860 47 H 0.140 0.860 48 H 0.144 0.856 49 H 0.073 0.927 50 H 0.119 0.881 51 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -9.067 -9.954 27.309 30.448 hybrid contribution 0.792 -0.211 -0.340 0.888 sum -8.275 -10.164 26.968 29.985 Atomic orbital electron populations 1.22216 0.96021 1.02101 1.02573 1.21576 0.94259 0.82817 1.03443 1.47973 1.65799 1.14154 1.06332 1.21662 0.97946 0.98388 0.83414 1.20903 0.92927 0.95365 0.89322 1.42216 1.12863 1.60753 1.21680 1.19211 0.89325 1.25903 1.02274 0.91247 1.24745 0.97842 1.00414 0.98098 1.69659 1.31590 1.37497 1.19534 0.86163 0.83727 0.76935 0.79228 1.21747 1.21736 1.20769 1.20581 0.77396 0.86835 0.85220 1.90700 1.44835 1.17834 1.87101 1.21790 1.03377 0.99611 0.92163 1.19735 1.02610 0.94040 0.88623 0.88661 1.21950 0.97405 0.97470 1.03539 1.19312 0.91598 1.02475 0.97056 1.20873 0.96274 0.96020 0.96424 1.21031 0.98960 1.02125 0.95407 1.20901 0.92301 0.98153 0.99159 1.21220 0.99566 1.04370 0.97568 1.18890 0.85753 0.93595 0.93192 1.86142 1.17141 1.72498 1.46518 1.23072 0.88554 1.01682 0.93477 0.92019 0.91594 0.92604 0.89895 0.90544 0.90737 0.89790 0.95938 0.96578 0.78293 0.93527 0.89107 0.89139 0.92963 0.90062 0.93414 0.85428 0.86009 0.86044 0.85611 0.92727 0.88069 0.92778 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.47 10.24 37.16 0.38 -1.09 16 2 C 0.10 1.07 5.93 -4.04 -0.02 1.05 16 3 N -0.61 -8.78 2.47 -173.68 -0.43 -9.21 16 4 C 0.11 1.93 5.52 -4.04 -0.02 1.90 16 5 C 0.14 3.14 6.58 -4.04 -0.03 3.11 16 6 N -0.73 -19.58 5.60 -59.91 -0.34 -19.92 16 7 C -0.24 -6.92 9.99 -15.06 -0.15 -7.07 16 8 H 0.07 1.99 7.83 -52.48 -0.41 1.58 16 9 C -0.02 -0.45 5.50 -17.43 -0.10 -0.55 16 10 N -0.93 -29.06 13.06 55.49 0.72 -28.34 16 11 Si 0.91 23.10 29.55 -169.99 -5.02 18.08 16 12 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 13 H -0.29 -7.42 7.11 56.52 0.40 -7.02 16 14 H -0.28 -7.01 7.11 56.52 0.40 -6.61 16 15 C 0.51 7.75 7.39 -10.99 -0.08 7.67 16 16 O -0.53 -10.17 13.54 5.56 0.08 -10.10 16 17 C -0.13 -1.44 3.47 -27.88 -0.10 -1.54 16 18 C -0.03 -0.38 2.17 -91.77 -0.20 -0.58 16 19 H 0.10 1.40 6.81 -51.93 -0.35 1.05 16 20 C -0.15 -1.75 8.74 37.16 0.32 -1.43 16 21 C -0.10 -1.10 4.79 -104.48 -0.50 -1.61 16 22 C -0.08 -0.68 8.76 -39.61 -0.35 -1.03 16 23 C -0.16 -1.22 10.04 -39.56 -0.40 -1.62 16 24 C -0.09 -0.67 10.04 -39.61 -0.40 -1.07 16 25 C -0.21 -1.82 9.04 -39.43 -0.36 -2.18 16 26 C 0.13 1.41 6.66 -39.21 -0.26 1.15 16 27 O -0.31 -3.51 9.26 -19.41 -0.18 -3.69 16 28 C 0.03 0.20 9.81 101.05 0.99 1.19 16 29 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 31 H 0.05 0.46 7.22 -51.93 -0.38 0.08 16 32 H 0.08 0.89 8.07 -51.93 -0.42 0.47 16 33 H 0.08 0.65 6.44 -51.93 -0.33 0.32 16 34 H 0.07 1.22 8.07 -51.93 -0.42 0.80 16 35 H 0.08 1.66 7.42 -51.93 -0.39 1.27 16 36 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 38 H 0.38 10.65 7.67 -40.82 -0.31 10.33 16 39 H 0.25 7.63 8.31 -40.82 -0.34 7.29 16 40 H 0.09 0.94 7.40 -51.93 -0.38 0.55 16 41 H 0.09 0.80 6.63 -51.93 -0.34 0.45 16 42 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 43 H 0.08 1.17 5.95 -51.93 -0.31 0.87 16 44 H 0.05 0.47 7.38 -51.93 -0.38 0.09 16 45 H 0.13 0.91 7.16 -52.49 -0.38 0.53 16 46 H 0.12 0.69 8.06 -52.48 -0.42 0.26 16 47 H 0.12 0.66 8.06 -52.49 -0.42 0.24 16 48 H 0.13 0.85 6.30 -52.49 -0.33 0.52 16 49 H 0.05 0.33 7.66 -51.93 -0.40 -0.07 16 50 H 0.10 0.62 8.14 -51.93 -0.42 0.19 16 51 H 0.05 0.32 7.66 -51.93 -0.40 -0.08 16 LS Contribution 408.46 15.07 6.16 6.16 Total: -1.00 -35.28 408.46 -8.72 -44.00 By element: Atomic # 1 Polarization: 15.14 SS G_CDS: -8.45 Total: 6.69 kcal Atomic # 6 Polarization: -2.42 SS G_CDS: -1.26 Total: -3.68 kcal Atomic # 7 Polarization: -57.42 SS G_CDS: -0.04 Total: -57.46 kcal Atomic # 8 Polarization: -13.68 SS G_CDS: -0.10 Total: -13.79 kcal Atomic # 14 Polarization: 23.10 SS G_CDS: -5.02 Total: 18.08 kcal Total LS contribution 6.16 Total: 6.16 kcal Total: -35.28 -8.72 -44.00 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001668619015.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.632 kcal (2) G-P(sol) polarization free energy of solvation -35.279 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.647 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.724 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.003 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.371 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds