Wall clock time and date at job start Tue Mar 31 2020 18:51:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46499 * 109.47250 * 2 1 4 4 C 1.46499 * 119.99698 * 269.99743 * 3 2 1 5 5 C 1.53002 * 109.47212 * 269.99625 * 4 3 2 6 6 N 1.46500 * 109.46854 * 180.02562 * 5 4 3 7 7 C 1.36936 * 119.99757 * 180.02562 * 6 5 4 8 8 H 1.08004 * 119.99777 * 359.97438 * 7 6 5 9 9 C 1.38815 * 120.00206 * 179.97438 * 7 6 5 10 10 N 1.31614 * 119.99740 * 359.97438 * 9 7 6 11 11 Si 1.86797 * 120.00041 * 179.97438 * 9 7 6 12 12 H 1.48510 * 109.47112 * 89.99970 * 11 9 7 13 13 H 1.48498 * 109.47318 * 209.99870 * 11 9 7 14 14 H 1.48498 * 109.47375 * 330.00126 * 11 9 7 15 15 C 1.34774 * 120.00284 * 89.99333 * 3 2 1 16 16 O 1.21280 * 120.00521 * 180.02562 * 15 3 2 17 17 C 1.50703 * 119.99710 * 0.02562 * 15 3 2 18 18 C 1.53006 * 109.47131 * 179.97438 * 17 15 3 19 19 H 1.09000 * 109.47050 * 305.00095 * 18 17 15 20 20 C 1.52999 * 109.46626 * 64.99793 * 18 17 15 21 21 C 1.50697 * 109.47239 * 184.99759 * 18 17 15 22 22 C 1.38165 * 120.03189 * 299.72949 * 21 18 17 23 23 C 1.38240 * 120.05431 * 179.76917 * 22 21 18 24 24 C 1.38286 * 120.11544 * 0.50680 * 23 22 21 25 25 C 1.38123 * 120.05383 * 359.74315 * 24 23 22 26 26 C 1.38712 * 120.02413 * 120.00207 * 21 18 17 27 27 O 1.35896 * 120.05686 * 359.97438 * 26 21 18 28 28 C 1.42907 * 117.00129 * 180.02562 * 27 26 21 29 29 H 1.09003 * 109.46955 * 60.00549 * 1 2 3 30 30 H 1.08997 * 109.46609 * 179.97438 * 1 2 3 31 31 H 1.08994 * 109.46901 * 300.00249 * 1 2 3 32 32 H 1.09002 * 109.47533 * 239.99787 * 2 1 3 33 33 H 1.09003 * 109.46955 * 119.99451 * 2 1 3 34 34 H 1.08997 * 109.47435 * 30.00136 * 4 3 2 35 35 H 1.09004 * 109.46773 * 149.99663 * 4 3 2 36 36 H 1.09001 * 109.46793 * 300.00088 * 5 4 3 37 37 H 1.08991 * 109.47001 * 60.00196 * 5 4 3 38 38 H 0.96999 * 120.00554 * 359.97438 * 6 5 4 39 39 H 0.96998 * 120.00329 * 180.02562 * 10 9 7 40 40 H 1.09004 * 109.47057 * 60.00280 * 17 15 3 41 41 H 1.08992 * 109.47337 * 299.99626 * 17 15 3 42 42 H 1.09002 * 109.46719 * 180.02562 * 20 18 17 43 43 H 1.08993 * 109.47839 * 299.99931 * 20 18 17 44 44 H 1.09000 * 109.47160 * 60.00369 * 20 18 17 45 45 H 1.07999 * 119.96941 * 0.02562 * 22 21 18 46 46 H 1.08006 * 119.94312 * 180.25125 * 23 22 21 47 47 H 1.07997 * 119.97241 * 179.76969 * 24 23 22 48 48 H 1.07997 * 120.02908 * 180.02562 * 25 24 23 49 49 H 1.09000 * 109.46834 * 59.99889 * 28 27 26 50 50 H 1.08998 * 109.47312 * 179.97438 * 28 27 26 51 51 H 1.09001 * 109.46811 * 300.00129 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2626 2.0717 -1.2688 5 6 3.7077 1.8313 -1.7104 6 7 3.9520 2.5224 -2.9788 7 6 5.1841 2.4495 -3.5719 8 1 5.9758 1.8829 -3.1043 9 6 5.4155 3.1038 -4.7741 10 7 4.4505 3.7939 -5.3441 11 14 7.0964 3.0050 -5.5828 12 1 7.1379 1.8355 -6.4971 13 1 7.3474 4.2474 -6.3565 14 1 8.1404 2.8534 -4.5377 15 6 2.2429 2.0166 1.1671 16 8 2.6468 3.1602 1.1672 17 6 1.9921 1.3061 2.4723 18 6 2.3240 2.2433 3.6352 19 1 3.3456 2.6077 3.5281 20 6 1.3563 3.4284 3.6270 21 6 2.1912 1.4954 4.9368 22 6 0.9770 0.9429 5.2961 23 6 0.8559 0.2526 6.4877 24 6 1.9465 0.1223 7.3279 25 6 3.1613 0.6772 6.9757 26 6 3.2867 1.3661 5.7778 27 8 4.4809 1.9130 5.4290 28 6 5.5656 1.7399 6.3432 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3632 -1.0277 -0.0005 31 1 -0.3633 0.5139 0.8899 32 1 1.8934 -0.5139 -0.8900 33 1 1.8933 -0.5138 0.8901 34 1 1.5818 1.6876 -2.0284 35 1 2.0956 3.1410 -1.1384 36 1 4.3884 2.2155 -0.9507 37 1 3.8746 0.7622 -1.8406 38 1 3.2408 3.0309 -3.3990 39 1 4.6120 4.2508 -6.1844 40 1 2.6227 0.4188 2.5299 41 1 0.9444 1.0116 2.5302 42 1 1.5930 4.0964 4.4553 43 1 1.4522 3.9694 2.6857 44 1 0.3346 3.0640 3.7342 45 1 0.1227 1.0467 4.6435 46 1 -0.0932 -0.1821 6.7648 47 1 1.8483 -0.4143 8.2600 48 1 4.0128 0.5749 7.6320 49 1 5.7594 0.6760 6.4797 50 1 6.4575 2.2231 5.9445 51 1 5.3071 2.1882 7.3026 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001668619015.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:51:30 Heat of formation + Delta-G solvation = -64.979829 kcal Electronic energy + Delta-G solvation = -29032.928892 eV Core-core repulsion = 25124.916427 eV Total energy + Delta-G solvation = -3908.012465 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.52746 -40.84792 -38.48460 -37.63165 -36.36678 -35.96809 -33.63310 -31.57917 -31.08242 -30.92440 -29.79586 -28.21392 -28.05446 -25.69509 -24.65755 -24.14617 -23.24078 -22.91571 -21.24301 -19.87245 -19.19982 -18.96556 -18.12551 -17.37142 -17.24153 -16.68167 -16.54141 -16.39288 -16.32233 -15.47273 -15.40186 -15.22682 -15.13621 -14.95805 -14.72826 -14.55080 -14.35401 -14.22726 -13.73108 -13.62127 -13.29679 -13.09603 -12.98093 -12.89595 -12.77969 -12.68214 -12.63517 -12.46119 -12.31620 -12.21270 -12.15214 -11.97738 -11.89556 -11.81894 -11.59162 -11.52603 -10.99938 -10.67536 -9.74307 -9.67351 -9.08767 -9.04864 -7.99578 -5.30577 0.41620 0.55108 1.44229 1.47447 1.55957 1.67561 1.99201 2.44022 2.54339 2.86243 3.33252 3.48194 3.75953 3.90125 4.00528 4.06152 4.12007 4.16137 4.18658 4.22095 4.26114 4.31564 4.36825 4.43478 4.46803 4.52591 4.55423 4.56890 4.61979 4.65854 4.70912 4.79698 4.82625 4.91428 4.94618 5.04663 5.07594 5.10403 5.16131 5.27877 5.36705 5.41618 5.42281 5.50599 5.60338 5.63736 5.67745 5.94510 6.21889 6.47822 6.51400 7.25064 7.27842 7.99342 8.25334 9.23835 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.014658 B = 0.002427 C = 0.002208 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1909.763230 B =11535.544810 C =12679.287938 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.095 3.905 3 N -0.607 5.607 4 C 0.124 3.876 5 C 0.150 3.850 6 N -0.743 5.743 7 C -0.252 4.252 8 H 0.072 0.928 9 C -0.074 4.074 10 N -0.968 5.968 11 Si 0.979 3.021 12 H -0.280 1.280 13 H -0.292 1.292 14 H -0.273 1.273 15 C 0.504 3.496 16 O -0.579 6.579 17 C -0.116 4.116 18 C -0.025 4.025 19 H 0.056 0.944 20 C -0.141 4.141 21 C -0.122 4.122 22 C -0.079 4.079 23 C -0.156 4.156 24 C -0.087 4.087 25 C -0.214 4.214 26 C 0.107 3.893 27 O -0.342 6.342 28 C 0.020 3.980 29 H 0.046 0.954 30 H 0.091 0.909 31 H 0.063 0.937 32 H 0.081 0.919 33 H 0.102 0.898 34 H 0.091 0.909 35 H 0.058 0.942 36 H -0.003 1.003 37 H 0.028 0.972 38 H 0.375 0.625 39 H 0.254 0.746 40 H 0.105 0.895 41 H 0.124 0.876 42 H 0.046 0.954 43 H 0.050 0.950 44 H 0.072 0.928 45 H 0.146 0.854 46 H 0.148 0.852 47 H 0.148 0.852 48 H 0.141 0.859 49 H 0.067 0.933 50 H 0.105 0.895 51 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.604 -13.424 29.359 33.980 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.027 4.027 3 N -0.339 5.339 4 C 0.000 4.000 5 C 0.023 3.977 6 N -0.386 5.386 7 C -0.383 4.383 8 H 0.090 0.910 9 C -0.266 4.266 10 N -0.618 5.618 11 Si 0.807 3.193 12 H -0.206 1.206 13 H -0.218 1.218 14 H -0.198 1.198 15 C 0.294 3.706 16 O -0.459 6.459 17 C -0.155 4.155 18 C -0.044 4.044 19 H 0.075 0.925 20 C -0.198 4.198 21 C -0.123 4.123 22 C -0.097 4.097 23 C -0.174 4.174 24 C -0.105 4.105 25 C -0.232 4.232 26 C 0.062 3.938 27 O -0.256 6.256 28 C -0.074 4.074 29 H 0.065 0.935 30 H 0.110 0.890 31 H 0.082 0.918 32 H 0.100 0.900 33 H 0.120 0.880 34 H 0.109 0.891 35 H 0.076 0.924 36 H 0.015 0.985 37 H 0.046 0.954 38 H 0.207 0.793 39 H 0.063 0.937 40 H 0.123 0.877 41 H 0.142 0.858 42 H 0.065 0.935 43 H 0.069 0.931 44 H 0.091 0.909 45 H 0.164 0.836 46 H 0.166 0.834 47 H 0.165 0.835 48 H 0.159 0.841 49 H 0.085 0.915 50 H 0.124 0.876 51 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -10.161 -12.787 29.188 33.447 hybrid contribution 1.125 0.625 -0.817 1.524 sum -9.036 -12.163 28.371 32.164 Atomic orbital electron populations 1.22174 0.94165 1.03695 1.02270 1.21918 0.95762 0.80292 1.04701 1.48083 1.65435 1.15642 1.04788 1.21255 0.95542 0.97572 0.85601 1.20937 0.95070 0.95024 0.86707 1.42397 1.12071 1.61125 1.23020 1.19581 0.90310 1.25783 1.02651 0.91045 1.25646 1.01861 1.00308 0.98809 1.69817 1.33681 1.38417 1.19856 0.85066 0.79113 0.76914 0.78194 1.20646 1.21825 1.19775 1.21390 0.76220 0.86405 0.86547 1.90686 1.47055 1.20296 1.87851 1.21785 1.05582 0.99089 0.89052 1.19545 1.00315 0.94370 0.90213 0.92512 1.21867 0.98932 0.97389 1.01576 1.19271 0.92799 1.03696 0.96499 1.21090 0.95807 0.95562 0.97207 1.21382 1.00054 1.01270 0.94706 1.21291 0.91749 0.97441 1.00051 1.21461 1.00807 1.03942 0.97017 1.19190 0.85689 0.94646 0.94304 1.86103 1.18191 1.73148 1.48145 1.23268 0.87828 1.02738 0.93554 0.93467 0.88978 0.91817 0.90018 0.87965 0.89073 0.92394 0.98538 0.95376 0.79256 0.93737 0.87725 0.85788 0.93456 0.93130 0.90901 0.83645 0.83387 0.83463 0.84093 0.91484 0.87638 0.91540 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.35 10.24 71.98 0.74 -1.62 16 2 C 0.09 1.76 5.93 86.38 0.51 2.27 16 3 N -0.61 -17.32 2.47 -821.80 -2.03 -19.35 16 4 C 0.12 4.53 5.52 86.38 0.48 5.01 16 5 C 0.15 6.77 6.58 86.38 0.57 7.34 16 6 N -0.74 -40.96 5.60 -343.45 -1.92 -42.89 16 7 C -0.25 -15.00 9.99 84.03 0.84 -14.16 16 8 H 0.07 4.13 7.83 -2.91 -0.02 4.11 16 9 C -0.07 -4.43 5.50 84.86 0.47 -3.96 16 10 N -0.97 -61.22 13.06 21.65 0.28 -60.94 16 11 Si 0.98 47.81 29.55 68.60 2.03 49.84 16 12 H -0.28 -13.15 7.11 99.48 0.71 -12.44 16 13 H -0.29 -14.21 7.11 99.48 0.71 -13.50 16 14 H -0.27 -12.77 7.11 99.48 0.71 -12.07 16 15 C 0.50 15.52 7.39 87.66 0.65 16.17 16 16 O -0.58 -23.77 13.54 -3.03 -0.04 -23.81 16 17 C -0.12 -2.45 3.47 29.85 0.10 -2.34 16 18 C -0.03 -0.62 2.17 -11.54 -0.03 -0.65 16 19 H 0.06 1.81 6.81 -2.39 -0.02 1.80 16 20 C -0.14 -3.44 8.74 71.98 0.63 -2.81 16 21 C -0.12 -2.48 4.79 -19.77 -0.09 -2.58 16 22 C -0.08 -1.15 8.76 22.25 0.19 -0.96 16 23 C -0.16 -1.86 10.04 22.28 0.22 -1.63 16 24 C -0.09 -1.08 10.04 22.25 0.22 -0.85 16 25 C -0.21 -3.35 9.04 22.37 0.20 -3.15 16 26 C 0.11 2.26 6.66 22.51 0.15 2.41 16 27 O -0.34 -8.04 9.26 -92.38 -0.86 -8.90 16 28 C 0.02 0.30 9.81 113.37 1.11 1.41 16 29 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 30 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 31 H 0.06 0.82 7.22 -2.39 -0.02 0.80 16 32 H 0.08 1.57 8.07 -2.39 -0.02 1.55 16 33 H 0.10 1.40 6.44 -2.39 -0.02 1.39 16 34 H 0.09 3.01 8.07 -2.39 -0.02 2.99 16 35 H 0.06 2.42 7.42 -2.38 -0.02 2.40 16 36 H 0.00 -0.17 8.14 -2.39 -0.02 -0.19 16 37 H 0.03 1.21 8.14 -2.39 -0.02 1.19 16 38 H 0.38 21.60 7.67 -92.71 -0.71 20.89 16 39 H 0.25 15.42 8.31 -92.71 -0.77 14.65 16 40 H 0.10 1.96 7.40 -2.39 -0.02 1.94 16 41 H 0.12 1.78 6.63 -2.39 -0.02 1.77 16 42 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 43 H 0.05 1.56 5.95 -2.39 -0.01 1.54 16 44 H 0.07 1.36 7.38 -2.39 -0.02 1.34 16 45 H 0.15 1.51 7.16 -2.91 -0.02 1.49 16 46 H 0.15 0.97 8.06 -2.91 -0.02 0.95 16 47 H 0.15 1.00 8.06 -2.91 -0.02 0.98 16 48 H 0.14 1.63 6.30 -2.91 -0.02 1.61 16 49 H 0.07 0.76 7.66 -2.39 -0.02 0.74 16 50 H 0.11 1.34 8.14 -2.39 -0.02 1.32 16 51 H 0.07 0.75 7.66 -2.39 -0.02 0.73 16 Total: -1.00 -80.01 408.46 4.63 -75.38 By element: Atomic # 1 Polarization: 30.56 SS G_CDS: 0.21 Total: 30.77 kcal Atomic # 6 Polarization: -7.07 SS G_CDS: 6.97 Total: -0.10 kcal Atomic # 7 Polarization: -119.50 SS G_CDS: -3.67 Total: -123.18 kcal Atomic # 8 Polarization: -31.81 SS G_CDS: -0.90 Total: -32.71 kcal Atomic # 14 Polarization: 47.81 SS G_CDS: 2.03 Total: 49.84 kcal Total: -80.01 4.63 -75.38 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001668619015.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.400 kcal (2) G-P(sol) polarization free energy of solvation -80.012 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.613 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.633 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.379 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.980 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds