Wall clock time and date at job start Tue Mar 31 2020 18:52:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46498 * 109.47427 * 2 1 4 4 C 1.46497 * 119.99980 * 275.19387 * 3 2 1 5 5 C 1.52996 * 109.47435 * 269.99753 * 4 3 2 6 6 N 1.46500 * 109.47508 * 179.97438 * 5 4 3 7 7 C 1.36943 * 119.99958 * 179.97438 * 6 5 4 8 8 H 1.07999 * 120.00073 * 0.02562 * 7 6 5 9 9 C 1.38812 * 119.99756 * 180.02562 * 7 6 5 10 10 N 1.31621 * 119.99575 * 180.02562 * 9 7 6 11 11 Si 1.86798 * 120.00198 * 0.02562 * 9 7 6 12 12 H 1.48496 * 109.47154 * 89.99771 * 11 9 7 13 13 H 1.48494 * 109.47174 * 209.99998 * 11 9 7 14 14 H 1.48504 * 109.47196 * 329.99749 * 11 9 7 15 15 C 1.34775 * 120.00002 * 95.19019 * 3 2 1 16 16 O 1.21284 * 119.99785 * 183.93073 * 15 3 2 17 17 C 1.50692 * 120.00121 * 3.92796 * 15 3 2 18 18 H 1.08999 * 109.47431 * 313.27677 * 17 15 3 19 19 C 1.53005 * 109.47020 * 73.28016 * 17 15 3 20 20 C 1.53004 * 109.47146 * 193.27961 * 17 15 3 21 21 C 1.50704 * 109.47284 * 175.00028 * 20 17 15 22 22 C 1.38259 * 119.94628 * 269.72852 * 21 20 17 23 23 C 1.38141 * 120.05892 * 179.72352 * 22 21 20 24 24 C 1.38734 * 119.94103 * 0.54645 * 23 22 21 25 25 O 1.35898 * 120.05614 * 179.74743 * 24 23 22 26 26 C 1.42903 * 117.00157 * 359.97438 * 25 24 23 27 27 C 1.38734 * 119.88977 * 359.72666 * 24 23 22 28 28 C 1.38149 * 119.94007 * 0.02562 * 27 24 23 29 29 H 1.09004 * 109.46712 * 299.99867 * 1 2 3 30 30 H 1.08997 * 109.46934 * 59.99924 * 1 2 3 31 31 H 1.09004 * 109.47116 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.47370 * 239.99627 * 2 1 3 33 33 H 1.09002 * 109.47394 * 120.00163 * 2 1 3 34 34 H 1.09005 * 109.47329 * 29.99918 * 4 3 2 35 35 H 1.09003 * 109.47556 * 149.99610 * 4 3 2 36 36 H 1.09005 * 109.46997 * 300.00369 * 5 4 3 37 37 H 1.09003 * 109.46865 * 59.99434 * 5 4 3 38 38 H 0.96996 * 120.00029 * 0.02562 * 6 5 4 39 39 H 0.97004 * 119.99303 * 180.02562 * 10 9 7 40 40 H 1.08997 * 109.46782 * 305.81514 * 19 17 15 41 41 H 1.09001 * 109.46905 * 185.81205 * 19 17 15 42 42 H 1.08999 * 109.46630 * 65.81831 * 19 17 15 43 43 H 1.08999 * 109.47084 * 294.99697 * 20 17 15 44 44 H 1.08998 * 109.47422 * 54.99842 * 20 17 15 45 45 H 1.08005 * 119.97103 * 359.97438 * 22 21 20 46 46 H 1.07995 * 120.03128 * 180.27469 * 23 22 21 47 47 H 1.09003 * 109.47070 * 179.97438 * 26 25 24 48 48 H 1.09003 * 109.47117 * 300.00060 * 26 25 24 49 49 H 1.09001 * 109.46957 * 59.99883 * 26 25 24 50 50 H 1.07998 * 120.02942 * 179.97438 * 27 24 23 51 51 H 1.07996 * 119.96632 * 179.97438 * 28 27 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1543 2.1100 -1.2635 5 6 3.5560 1.8849 -1.8340 6 7 3.6917 2.6133 -3.0978 7 6 4.8689 2.5606 -3.7954 8 1 5.6971 1.9817 -3.4142 9 6 4.9977 3.2512 -4.9927 10 7 6.1290 3.2001 -5.6634 11 14 3.5654 4.2530 -5.6518 12 1 3.6499 5.6405 -5.1293 13 1 3.6205 4.2786 -7.1355 14 1 2.2872 3.6363 -5.2145 15 6 2.3426 1.9813 1.1624 16 8 2.6787 3.1466 1.1701 17 6 2.2874 1.2045 2.4525 18 1 1.3501 0.6505 2.5032 19 6 3.4621 0.2257 2.5091 20 6 2.3724 2.1722 3.6346 21 6 2.1941 1.4095 4.9221 22 6 0.9296 1.2414 5.4553 23 6 0.7629 0.5378 6.6323 24 6 1.8669 0.0093 7.2854 25 8 1.7061 -0.6789 8.4462 26 6 0.3716 -0.8196 8.9374 27 6 3.1353 0.1841 6.7513 28 6 3.2961 0.8842 5.5712 29 1 -0.3633 0.5138 0.8901 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.8934 -0.5139 -0.8899 33 1 1.8934 -0.5139 0.8900 34 1 1.4106 1.7482 -1.9736 35 1 2.0005 3.1747 -1.0873 36 1 4.2997 2.2468 -1.1239 37 1 3.7099 0.8203 -2.0102 38 1 2.9480 3.1335 -3.4400 39 1 6.2190 3.6830 -6.4999 40 1 3.4604 -0.3960 1.6138 41 1 3.3655 -0.4072 3.3913 42 1 4.3972 0.7833 2.5626 43 1 3.3464 2.6616 3.6341 44 1 1.5881 2.9238 3.5460 45 1 0.0710 1.6572 4.9490 46 1 -0.2255 0.4031 7.0461 47 1 0.3848 -1.3883 9.8673 48 1 -0.0542 0.1670 9.1205 49 1 -0.2339 -1.3453 8.1990 50 1 3.9963 -0.2261 7.2580 51 1 4.2833 1.0208 5.1553 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001668648551.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:52:01 Heat of formation + Delta-G solvation = -39.919833 kcal Electronic energy + Delta-G solvation = -28635.687131 eV Core-core repulsion = 24728.761349 eV Total energy + Delta-G solvation = -3906.925782 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.65931 -40.09253 -38.13996 -36.32374 -35.08382 -34.42886 -31.81709 -31.48374 -30.58296 -30.52233 -28.20453 -27.88847 -26.40255 -24.39011 -23.66084 -23.02725 -22.34959 -21.47072 -20.79679 -18.81688 -18.48900 -17.60217 -17.28198 -16.56220 -16.20549 -16.09771 -15.48614 -15.45181 -14.82626 -14.55844 -14.32627 -14.06151 -13.98714 -13.80692 -13.74622 -13.66644 -13.34847 -13.27600 -12.81493 -12.59444 -12.52177 -12.40178 -12.31826 -11.98740 -11.76796 -11.56730 -11.51840 -11.27300 -11.19817 -11.14161 -11.04786 -11.00587 -10.94033 -10.70896 -10.15461 -9.60428 -9.55376 -9.29536 -8.87445 -8.56021 -8.38039 -7.22129 -5.74431 -3.10421 1.03009 1.09581 2.71513 2.89780 3.01539 3.39319 3.43223 3.44680 3.47568 4.30862 4.42758 4.53774 4.61571 4.63971 4.69676 4.70934 4.76321 4.84193 4.88359 5.01894 5.04363 5.06963 5.12258 5.13816 5.26689 5.32477 5.43821 5.48278 5.54516 5.55297 5.59719 5.64649 5.65880 5.70103 5.75365 5.78399 5.94623 5.96864 6.00911 6.01676 6.04867 6.06305 6.40104 6.45467 6.50134 6.66387 6.84088 7.03298 7.48700 8.00863 8.28371 8.43967 9.22593 9.94852 10.14252 11.43878 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.025729 B = 0.002022 C = 0.001970 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1088.002430 B =13846.350094 C =14206.464613 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.095 3.905 3 N -0.606 5.606 4 C 0.103 3.897 5 C 0.148 3.852 6 N -0.753 5.753 7 C -0.243 4.243 8 H 0.090 0.910 9 C 0.004 3.996 10 N -0.934 5.934 11 Si 0.886 3.114 12 H -0.283 1.283 13 H -0.291 1.291 14 H -0.278 1.278 15 C 0.516 3.484 16 O -0.533 6.533 17 C -0.103 4.103 18 H 0.092 0.908 19 C -0.149 4.149 20 C -0.059 4.059 21 C -0.112 4.112 22 C -0.077 4.077 23 C -0.206 4.206 24 C 0.119 3.881 25 O -0.320 6.320 26 C 0.028 3.972 27 C -0.150 4.150 28 C -0.073 4.073 29 H 0.055 0.945 30 H 0.060 0.940 31 H 0.066 0.934 32 H 0.082 0.918 33 H 0.086 0.914 34 H 0.074 0.926 35 H 0.084 0.916 36 H 0.030 0.970 37 H 0.026 0.974 38 H 0.361 0.639 39 H 0.259 0.741 40 H 0.065 0.935 41 H 0.069 0.931 42 H 0.065 0.935 43 H 0.083 0.917 44 H 0.076 0.924 45 H 0.124 0.876 46 H 0.126 0.874 47 H 0.099 0.901 48 H 0.055 0.945 49 H 0.055 0.945 50 H 0.130 0.870 51 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.579 -11.140 28.578 34.402 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.028 4.028 3 N -0.340 5.340 4 C -0.019 4.019 5 C 0.019 3.981 6 N -0.400 5.400 7 C -0.373 4.373 8 H 0.107 0.893 9 C -0.192 4.192 10 N -0.582 5.582 11 Si 0.716 3.284 12 H -0.210 1.210 13 H -0.217 1.217 14 H -0.204 1.204 15 C 0.304 3.696 16 O -0.409 6.409 17 C -0.124 4.124 18 H 0.111 0.889 19 C -0.206 4.206 20 C -0.097 4.097 21 C -0.112 4.112 22 C -0.095 4.095 23 C -0.225 4.225 24 C 0.074 3.926 25 O -0.234 6.234 26 C -0.067 4.067 27 C -0.168 4.168 28 C -0.091 4.091 29 H 0.074 0.926 30 H 0.079 0.921 31 H 0.085 0.915 32 H 0.100 0.900 33 H 0.104 0.896 34 H 0.093 0.907 35 H 0.102 0.898 36 H 0.048 0.952 37 H 0.043 0.957 38 H 0.193 0.807 39 H 0.069 0.931 40 H 0.084 0.916 41 H 0.088 0.912 42 H 0.084 0.916 43 H 0.102 0.898 44 H 0.095 0.905 45 H 0.142 0.858 46 H 0.144 0.856 47 H 0.117 0.883 48 H 0.073 0.927 49 H 0.073 0.927 50 H 0.148 0.852 51 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -15.022 -10.667 28.632 34.048 hybrid contribution -1.329 0.664 -0.692 1.639 sum -16.350 -10.003 27.941 33.883 Atomic orbital electron populations 1.22201 0.95993 1.02173 1.02517 1.21761 0.94365 0.82791 1.03907 1.47883 1.65263 1.14241 1.06578 1.21693 0.98585 0.97890 0.83773 1.20879 0.93599 0.95492 0.88096 1.42562 1.14751 1.59649 1.22995 1.19034 0.90702 1.25909 1.01610 0.89251 1.24672 0.96810 1.00280 0.97417 1.69708 1.24500 1.46879 1.17099 0.86520 0.82769 0.80845 0.78227 1.20983 1.21703 1.20381 1.20618 0.76642 0.87319 0.85037 1.90723 1.46778 1.16698 1.86725 1.21279 1.01420 0.97434 0.92279 0.88941 1.21931 0.97303 0.98635 1.02777 1.20373 1.04394 0.95959 0.88950 1.19806 0.93087 1.00839 0.97456 1.20857 0.96969 0.96991 0.94672 1.21203 0.97968 1.04596 0.98747 1.19049 0.94311 0.93058 0.86160 1.86067 1.29991 1.70455 1.36840 1.23046 0.82201 1.01719 0.99772 1.20443 0.95037 1.03757 0.97592 1.20952 0.98947 0.95613 0.93620 0.92629 0.92103 0.91500 0.89962 0.89588 0.90730 0.89801 0.95193 0.95653 0.80687 0.93064 0.91603 0.91169 0.91603 0.89837 0.90502 0.85815 0.85634 0.88293 0.92681 0.92657 0.85241 0.85090 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.39 10.24 37.16 0.38 -1.01 16 2 C 0.09 0.91 5.54 -4.04 -0.02 0.89 16 3 N -0.61 -8.10 2.47 -173.69 -0.43 -8.53 16 4 C 0.10 1.69 5.57 -4.05 -0.02 1.67 16 5 C 0.15 3.02 6.58 -4.04 -0.03 2.99 16 6 N -0.75 -18.69 5.41 -59.91 -0.32 -19.01 16 7 C -0.24 -7.12 10.47 -15.06 -0.16 -7.28 16 8 H 0.09 2.80 8.06 -52.49 -0.42 2.38 16 9 C 0.00 0.12 5.50 -17.43 -0.10 0.02 16 10 N -0.93 -29.89 13.97 55.49 0.78 -29.12 16 11 Si 0.89 22.59 27.74 -169.99 -4.71 17.87 16 12 H -0.28 -7.22 7.11 56.52 0.40 -6.82 16 13 H -0.29 -7.43 7.11 56.52 0.40 -7.03 16 14 H -0.28 -6.59 6.52 56.52 0.37 -6.22 16 15 C 0.52 7.28 6.90 -10.99 -0.08 7.20 16 16 O -0.53 -9.80 15.63 5.55 0.09 -9.71 16 17 C -0.10 -1.03 1.86 -91.77 -0.17 -1.20 16 18 H 0.09 0.77 7.18 -51.93 -0.37 0.40 16 19 C -0.15 -1.34 8.15 37.16 0.30 -1.04 16 20 C -0.06 -0.59 4.15 -27.88 -0.12 -0.71 16 21 C -0.11 -0.99 4.72 -104.60 -0.49 -1.48 16 22 C -0.08 -0.63 9.69 -39.61 -0.38 -1.01 16 23 C -0.21 -1.63 9.04 -39.43 -0.36 -1.99 16 24 C 0.12 1.06 6.69 -39.21 -0.26 0.80 16 25 O -0.32 -2.73 10.50 -19.42 -0.20 -2.94 16 26 C 0.03 0.13 9.81 101.05 0.99 1.12 16 27 C -0.15 -1.30 9.99 -39.43 -0.39 -1.70 16 28 C -0.07 -0.62 8.11 -39.61 -0.32 -0.94 16 29 H 0.05 0.44 7.98 -51.93 -0.41 0.03 16 30 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 31 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 32 H 0.08 0.81 8.11 -51.93 -0.42 0.38 16 33 H 0.09 0.67 4.47 -51.93 -0.23 0.44 16 34 H 0.07 1.10 8.07 -51.93 -0.42 0.68 16 35 H 0.08 1.51 7.37 -51.93 -0.38 1.13 16 36 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.36 8.64 5.53 -40.82 -0.23 8.41 16 39 H 0.26 7.88 8.31 -40.82 -0.34 7.54 16 40 H 0.07 0.58 6.12 -51.93 -0.32 0.26 16 41 H 0.07 0.54 6.66 -51.93 -0.35 0.19 16 42 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 43 H 0.08 0.93 8.04 -51.93 -0.42 0.51 16 44 H 0.08 0.81 8.07 -51.93 -0.42 0.39 16 45 H 0.12 0.84 8.06 -52.48 -0.42 0.42 16 46 H 0.13 0.74 6.30 -52.49 -0.33 0.41 16 47 H 0.10 0.28 8.14 -51.93 -0.42 -0.14 16 48 H 0.05 0.22 7.66 -51.93 -0.40 -0.18 16 49 H 0.05 0.21 7.66 -51.93 -0.40 -0.18 16 50 H 0.13 0.98 8.06 -52.49 -0.42 0.55 16 51 H 0.13 0.96 8.04 -52.49 -0.42 0.54 16 LS Contribution 408.06 15.07 6.15 6.15 Total: -1.00 -35.76 408.06 -8.37 -44.14 By element: Atomic # 1 Polarization: 13.29 SS G_CDS: -8.49 Total: 4.80 kcal Atomic # 6 Polarization: -2.43 SS G_CDS: -1.22 Total: -3.66 kcal Atomic # 7 Polarization: -56.68 SS G_CDS: 0.02 Total: -56.66 kcal Atomic # 8 Polarization: -12.53 SS G_CDS: -0.12 Total: -12.65 kcal Atomic # 14 Polarization: 22.59 SS G_CDS: -4.71 Total: 17.87 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -35.76 -8.37 -44.14 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001668648551.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.218 kcal (2) G-P(sol) polarization free energy of solvation -35.763 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.545 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.375 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.138 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.920 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds